Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 8.6e-157 557.0 290 100.0
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.7e-144 515.0 290 92.1
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.7e-125 453.0 290 85.5
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 1.4e-98 363.6 290 68.6
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 3.2e-95 352.4 296 66.2
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 5.5e-95 351.7 291 64.3
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 3.3e-92 342.4 290 64.1
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 2.1e-86 323.2 290 63.4
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 8.8e-85 317.8 311 57.2
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 2.0e-84 316.6 293 58.7
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 1.6e-81 307.0 293 58.0
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 3.5e-81 305.8 311 56.9
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 1.5e-79 300.4 288 60.8
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 1.2e-78 297.4 290 57.9
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.0e-77 292.7 174 88.5
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 4.0e-77 292.4 174 87.9
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 6.7e-77 291.6 317 53.0
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 8.8e-77 291.2 295 58.6
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 1.4e-74 283.9 294 57.5
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 2.2e-72 276.6 365 47.1
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 3.8e-72 275.8 293 53.9
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 5.0e-72 275.4 315 54.3
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 6.5e-72 275.0 294 55.1
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 3.2e-71 272.7 296 55.7
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 6.1e-70 268.5 302 54.3
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 2.6e-68 263.1 384 43.8
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 3.4e-68 262.7 310 51.9
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 4.4e-68 262.3 274 52.9
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 1.3e-67 260.8 293 52.6
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 2.2e-67 260.0 396 43.4
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 3.7e-67 259.2 389 43.2
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 3.1e-66 256.1 292 55.1
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 1.2e-65 254.2 288 49.3
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 2.0e-65 253.4 320 48.1
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 1.0e-64 251.1 275 53.8
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 2.2e-64 250.0 246 57.7
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 2.5e-63 246.5 306 48.7
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 1.6e-62 243.8 293 49.8
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 2.1e-62 243.4 290 50.7
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 4.7e-62 242.3 288 51.4
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 8.0e-62 241.5 339 46.3
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 3.0e-61 239.6 277 53.1
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 4.0e-61 239.2 277 53.1
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 4.0e-61 239.2 293 49.5
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 6.8e-61 238.4 277 53.1
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 2.0e-60 236.9 293 51.2
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 4.4e-60 235.7 341 44.6
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 5.7e-60 235.3 301 48.5
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 7.5e-60 235.0 293 48.1
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.8e-59 233.0 300 47.0
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 3.7e-59 232.6 276 50.4
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 4.9e-59 232.3 293 48.5
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 2.4e-58 229.9 301 47.8
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 2.4e-58 229.9 293 50.9
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 3.1e-58 229.6 342 44.4
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 1.6e-57 227.3 292 46.9
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 2.7e-57 226.5 281 51.2
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 2.7e-57 226.5 298 47.0
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 3.5e-57 226.1 343 46.6
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 4.5e-57 225.7 294 48.3
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 7.8e-57 224.9 292 48.3
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 1.0e-56 224.6 373 41.6
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 3.8e-56 222.6 341 42.8
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 6.6e-56 221.9 286 46.9
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 8.6e-56 221.5 310 46.5
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 3.3e-55 219.5 302 45.0
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 4.3e-55 219.2 301 48.8
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 4.3e-55 219.2 289 47.1
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 5.6e-55 218.8 286 45.1
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 9.5e-55 218.0 232 51.3
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.1e-54 216.9 349 41.8
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 8.0e-54 214.9 339 43.1
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.8e-53 213.8 371 41.0
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 3.0e-53 213.0 323 42.1
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 5.2e-53 212.2 175 65.7
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 8.9e-53 211.5 288 47.9
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 1.2e-52 211.1 359 39.6
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 1.5e-52 210.7 343 42.0
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 2.0e-52 210.3 288 48.6
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 2.0e-52 210.3 243 48.1
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 3.4e-52 209.5 313 42.5
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 5.7e-52 208.8 330 43.0
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.3e-51 207.6 376 39.4
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 1.7e-51 207.2 318 44.0
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 8.3e-51 204.9 329 41.3
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 8.3e-51 204.9 293 44.7
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 4.1e-50 202.6 293 42.3
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 4.1e-50 202.6 314 41.4
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 4.1e-50 202.6 290 45.5
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 4.1e-50 202.6 274 44.9
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 1.2e-49 201.1 295 43.7
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.0e-49 200.3 286 43.0
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 5.9e-49 198.7 295 44.7
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.3e-48 196.8 297 43.1
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 3.0e-48 196.4 353 41.4
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 3.9e-48 196.1 401 36.4
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 5.0e-48 195.7 313 42.8
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 1.5e-47 194.1 293 41.3
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.5e-47 194.1 280 44.6
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 7.3e-47 191.8 278 43.9
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 1.6e-46 190.7 278 42.8
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 2.8e-46 189.9 376 37.2
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 8.0e-46 188.3 173 58.4
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 1.5e-44 184.1 337 38.9
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 9.8e-44 181.4 295 41.7
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 1.3e-43 181.0 242 47.1
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 1.3e-43 181.0 353 39.9
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 1.7e-43 180.6 209 48.8
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 4.9e-43 179.1 179 50.8
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 7.0e-42 175.3 263 43.0
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 2.0e-41 173.7 171 55.6
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 1.3e-40 171.0 210 45.7
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 1.6e-38 164.1 295 41.4
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 4.7e-38 162.5 296 42.6
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 1.1e-37 161.4 290 39.0
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 3.1e-37 159.8 368 34.8
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 1.2e-36 157.9 285 37.5
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 4.4e-36 156.0 297 41.1
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 5.8e-36 155.6 294 39.8
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 9.8e-36 154.8 335 36.1
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 1.3e-35 154.5 236 41.5
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 6.4e-35 152.1 287 38.7
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 1.1e-34 151.4 270 40.7
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 2.4e-34 150.2 299 38.1
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 5.4e-34 149.1 290 36.9
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 5.4e-34 149.1 240 39.6
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 7.1e-34 148.7 300 36.7
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 7.1e-34 148.7 300 36.7
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 9.2e-34 148.3 161 52.8
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 2.1e-33 147.1 246 41.1
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 2.7e-33 146.7 298 38.6
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 3.5e-33 146.4 296 39.9
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 3.5e-33 146.4 296 39.9
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 1.3e-32 144.4 176 49.4
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 3.9e-32 142.9 244 41.4
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 5.6e-31 139.0 297 38.7
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 3.6e-30 136.3 114 60.5
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 2.3e-29 133.7 257 38.5
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 9.9e-28 128.3 251 38.6
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 1.3e-27 127.9 292 35.6
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 8.4e-27 125.2 250 38.4
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 1.4e-26 124.4 250 38.0
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 5.4e-26 122.5 193 42.5
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 9.2e-26 121.7 292 32.9
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 2.1e-25 120.6 350 28.3
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.1e-23 114.8 122 50.8
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.2e-22 111.3 223 36.3
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.6e-22 110.9 91 57.1
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 6.9e-21 105.5 291 33.3
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.6e-17 94.4 93 58.1
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 4.6e-17 92.8 137 42.3
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 1.9e-15 87.4 239 31.4
FvH4_4g24221 Fragaria vesca HOM05D004296 ORTHO05D005045 9.6e-15 85.1 154 40.3
arahy.Tifrunner.gnm1.ann1.BHE6V7 Arachis hypogaea HOM05D004296 ORTHO05D005045 2.8e-14 83.6 276 29.7
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 1.7e-11 74.3 172 34.9
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 2.2e-11 73.9 116 40.5
arahy.Tifrunner.gnm1.ann1.ZI9W5R Arachis hypogaea HOM05D004296 ORTHO05D005045 1.4e-10 71.2 147 35.4
Cfa014102 Carpinus fangiana HOM05D004296 ORTHO05D005045 3.2e-10 70.1 55 58.2
Cpa.g.sc39.98 Carica papaya HOM05D004296 ORTHO05D005045 4.6e-09 66.2 78 48.7
AagrBONN_evm.TU.Sc2ySwM_228.2126 Anthoceros agrestis HOM05D004296 ORTHO05D005045 1.0e-08 65.1 167 32.3
Nitab4.5_0001315g0090 Nicotiana tabacum HOM05D004296 ORTHO05D005045 3.9e-08 63.2 96 47.9
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 4.3e-07 59.7 235 26.0
AagrBONN_evm.TU.Sc2ySwM_368.2814 Anthoceros agrestis HOM05D004296 ORTHO05D005045 8.1e-06 55.5 64 43.8


User provided reference genes

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