Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003771 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 2.7e-135 485.3 243 100.0
Actinidia12353 Actinidia chinensis HOM05D007471 ORTHO05D009481 1.4e-104 383.3 243 79.0
Rhsim06G0179200 Rhododendron simsii HOM05D000358 ORTHO05D001562 1.9e-101 372.9 243 77.4
Dinv05327 Davidia involucrata HOM05D007471 ORTHO05D009481 3.6e-92 342.0 244 71.3
CSS0004770 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 3.4e-90 335.5 168 100.0
Hma1.2p1_0599F.1_g186930 Hydrangea macrophylla HOM05D007471 ORTHO05D009481 1.9e-88 329.7 243 67.5
Lj8A138T38 Lonicera japonica HOM05D007471 ORTHO05D009481 5.1e-86 321.6 243 64.6
QL04p066931 Quercus lobata HOM05D007471 ORTHO05D009481 1.3e-84 317.0 243 62.1
TAR626G0037 Trochodendron aralioides HOM05D007471 ORTHO05D009481 1.1e-83 313.9 244 62.7
vmacro12060 Vaccinium macrocarpon HOM05D007471 ORTHO05D009481 2.6e-82 309.3 203 75.9
Cpa.g.sc136.59 Carica papaya HOM05D007471 ORTHO05D009481 3.2e-80 302.4 243 61.3
Manes.12G067200 Manihot esculenta HOM05D007471 ORTHO05D009481 4.2e-80 302.0 244 58.6
GSVIVG01030129001 Vitis vinifera HOM05D007471 ORTHO05D009481 1.8e-78 296.6 243 61.7
TWI36G0936 Tripterygium wilfordii HOM05D007471 ORTHO05D009481 4.3e-77 292.0 243 58.4
MD17G1122600 Malus domestica HOM05D007471 ORTHO05D009481 1.1e-75 287.3 244 58.2
Haze_12583 Corylus avellana HOM05D007471 ORTHO05D009481 3.1e-75 285.8 242 59.5
Ciclev10016450m.g Citrus clementina HOM05D007471 ORTHO05D009481 2.0e-74 283.1 245 58.8
MD17G1121200 Malus domestica HOM05D007471 ORTHO05D009481 4.5e-74 282.0 244 57.4
Nn1g07565 Nelumbo nucifera HOM05D007471 ORTHO05D009481 4.5e-74 282.0 244 57.0
RcHm_v2.0_Chr2g0155251 Rosa chinensis HOM05D007471 ORTHO05D009481 1.7e-73 280.0 244 57.0
Eucgr.K01386 Eucalyptus grandis HOM05D007471 ORTHO05D009481 3.8e-73 278.9 245 56.7
Sc21g0000400 Simmondsia chinensis HOM05D007471 ORTHO05D009481 3.8e-73 278.9 245 57.1
FAN05G3962 Fragaria x ananassa HOM05D007471 ORTHO05D009481 7.1e-72 274.6 244 56.6
FvH4_6g40230 Fragaria vesca HOM05D007471 ORTHO05D009481 1.2e-71 273.9 244 56.1
FAN14G4986 Fragaria x ananassa HOM05D007471 ORTHO05D009481 1.0e-70 270.8 244 55.7
Peaxi162Scf00359g00320 Petunia axillaris HOM05D007471 ORTHO05D009481 1.8e-70 270.0 243 53.9
Nitab4.5_0003086g0070 Nicotiana tabacum HOM05D007471 ORTHO05D009481 8.7e-70 267.7 243 53.9
FAN09G1454 Fragaria x ananassa HOM05D007471 ORTHO05D009481 1.1e-69 267.3 244 54.9
Cc05_g01930 Coffea canephora HOM05D007471 ORTHO05D009481 5.7e-69 265.0 246 53.7
PGR044G0015 Punica granatum HOM05D007471 ORTHO05D009481 3.7e-68 262.3 243 51.9
Lalb_Chr10g0094201 Lupinus albus HOM05D007471 ORTHO05D009481 4.1e-67 258.8 245 54.3
HanXRQChr09g0257421 Helianthus annuus HOM05D007471 ORTHO05D009481 5.3e-67 258.5 245 54.3
Psat1g019920 Pisum sativum HOM05D007471 ORTHO05D009481 5.3e-67 258.5 246 52.4
Solyc07g045150.3 Solanum lycopersicum HOM05D007471 ORTHO05D009481 9.0e-67 257.7 243 52.3
PGSC0003DMG402017414 Solanum tuberosum HOM05D007471 ORTHO05D009481 1.2e-66 257.3 243 51.0
Sopen07g023700 Solanum pennellii HOM05D007471 ORTHO05D009481 1.5e-66 256.9 243 52.3
PSO210G0038 Papaver somniferum HOM05D007471 ORTHO05D009481 2.0e-66 256.5 244 52.9
Lj6g0025127 Lotus japonicus HOM05D007471 ORTHO05D009481 1.0e-65 254.2 246 53.3
MELO3C024177.2 Cucumis melo HOM05D007471 ORTHO05D009481 8.5e-65 251.1 248 50.4
MSTRG.6626 Avicennia marina HOM05D007471 ORTHO05D009481 1.1e-64 250.8 243 52.3
CsaV3_7G002330 Cucumis sativus L. HOM05D007471 ORTHO05D009481 1.9e-64 250.0 248 50.0
BcaB03g14688 Brassica carinata HOM05D007471 ORTHO05D009481 2.5e-64 249.6 244 50.8
Lsat_1_v5_gn_9_102921 Lactuca sativa HOM05D007471 ORTHO05D009481 2.5e-64 249.6 244 55.3
MBI14_g27042_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 4.2e-64 248.8 233 55.8
Glyma.09G086000 Glycine max HOM05D007471 ORTHO05D009481 1.2e-63 247.3 245 50.2
Sp3g06580 Schrenkiella parvula HOM05D007471 ORTHO05D009481 2.1e-63 246.5 244 50.4
Sed0023252 Sechium edule HOM05D007471 ORTHO05D009481 3.6e-63 245.7 245 49.4
AL3G19000 Arabidopsis lyrata HOM05D007471 ORTHO05D009481 1.8e-62 243.4 244 49.2
Migut.M00062 Erythranthe guttata HOM05D007471 ORTHO05D009481 1.8e-62 243.4 243 50.2
PSO210G4841 Papaver somniferum HOM05D007471 ORTHO05D009481 1.8e-62 243.4 246 50.4
BcaC01g04271 Brassica carinata HOM05D007471 ORTHO05D009481 2.3e-62 243.0 244 51.6
C03p43000 Brassica napus HOM05D007471 ORTHO05D009481 2.3e-62 243.0 244 51.6
THA.LOC104819026 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 5.1e-62 241.9 246 52.0
A03p35390 Brassica napus HOM05D007471 ORTHO05D009481 6.7e-62 241.5 244 50.4
BraA03t12717Z Brassica rapa HOM05D007471 ORTHO05D009481 6.7e-62 241.5 244 50.4
CARHR082340 Cardamine hirsuta HOM05D007471 ORTHO05D009481 8.8e-62 241.1 244 50.0
Carub.0003s0722 Capsella rubella HOM05D007471 ORTHO05D009481 1.5e-61 240.4 246 50.8
Glyma.15G195100 Glycine max HOM05D007471 ORTHO05D009481 2.5e-61 239.6 245 49.4
AT3G07640 Arabidopsis thaliana HOM05D007471 ORTHO05D009481 3.3e-61 239.2 244 49.2
BolC3t16568H Brassica oleracea HOM05D007471 ORTHO05D009481 3.3e-61 239.2 244 50.8
CAN.G826.3 Capsicum annuum HOM05D007471 ORTHO05D009481 5.7e-61 238.4 243 49.8
Medtr2g049140 Medicago truncatula HOM05D007471 ORTHO05D009481 1.3e-60 237.3 245 49.4
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 3.7e-60 235.7 243 51.4
SalBow7G1274 Salvia bowleyana HOM05D007471 ORTHO05D009481 3.7e-60 235.7 243 48.6
ECA240G3131 Erigeron canadensis HOM05D001349 ORTHO05D001980 1.1e-59 234.2 244 51.2
Atru.BG.43.p Acer truncatum HOM05D007471 ORTHO05D009481 2.4e-59 233.0 186 64.5
Thhalv10021420m.g Eutrema salsugineum HOM05D007471 ORTHO05D009481 5.3e-59 231.9 244 48.4
AUR62018237 Chenopodium quinoa HOM05D007471 ORTHO05D009481 3.8e-57 225.7 244 50.0
Aa31LG5G18220 Aethionema arabicum HOM05D007471 ORTHO05D009481 6.5e-57 224.9 267 47.2
Oeu000672.1 Olea europaea HOM05D007471 ORTHO05D009481 8.5e-57 224.6 201 53.7
VMungo1309G3041 Vigna mungo HOM05D007471 ORTHO05D009481 1.1e-56 224.2 244 48.0
AUR62037766 Chenopodium quinoa HOM05D007471 ORTHO05D009481 9.4e-56 221.1 244 47.1
ATR0751G158 Amborella trichopoda HOM05D007471 ORTHO05D009481 2.7e-55 219.5 245 49.8
ClCG02G003070 Citrullus lanatus HOM05D007471 ORTHO05D009481 2.7e-55 219.5 293 41.0
Phvul.009G214800 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 3.6e-55 219.2 244 46.3
Prupe.3G192700 Prunus persica HOM05D007471 ORTHO05D009481 9.7e-53 211.1 174 59.8
Ca_02565_v3 Cicer arietinum L. HOM05D007471 ORTHO05D009481 1.3e-52 210.7 223 49.8
DCAR_019662 Daucus carota HOM05D007471 ORTHO05D009481 2.4e-51 206.5 206 50.0
Duzib133G1025 Durio zibethinus HOM05D007471 ORTHO05D009481 5.9e-50 201.8 249 45.0
THA.LOC104822442 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 1.5e-48 197.2 247 45.7
Thecc.01G199800 Theobroma cacao HOM05D007471 ORTHO05D009481 2.7e-47 193.0 249 43.0
Gohir.A07G193500 Gossypium hirsutum HOM05D007471 ORTHO05D009481 8.8e-46 188.0 252 41.7
Phvul.009G215100 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 4.4e-45 185.7 244 41.4
Gorai.001G223900 Gossypium raimondii HOM05D007471 ORTHO05D009481 5.7e-45 185.3 252 40.9
Gohir.D07G199700 Gossypium hirsutum HOM05D007471 ORTHO05D009481 1.7e-44 183.7 252 40.5
Os02g0582400 Oryza sativa ssp. japonica HOM05D007471 ORTHO05D009481 3.5e-42 176.0 241 36.5
CDE11G0370 Ceratophyllum demersum HOM05D007471 ORTHO05D009481 1.0e-41 174.5 252 41.7
FAN02G2672 Fragaria x ananassa HOM05D007471 ORTHO05D009481 1.3e-41 174.1 244 40.2
Zm00001eb245410 Zea mays HOM05D007471 ORTHO05D009481 1.7e-41 173.7 243 36.6
TPR.G20279 Trifolium pratense HOM05D007471 ORTHO05D009481 1.1e-40 171.0 175 49.1
BcaB03g14686 Brassica carinata HOM05D007471 ORTHO05D009481 3.2e-40 169.5 184 47.8
COL.COLO4_19658 Corchorus olitorius HOM05D007471 ORTHO05D009481 2.3e-38 163.3 175 47.4
MBI14_g39587_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 7.5e-37 158.3 238 39.9
TPR.G28406 Trifolium pratense HOM05D007471 ORTHO05D009481 1.3e-36 157.5 205 43.9
SGA_v2.0_scaffold73G24486 Striga asiatica HOM05D007471 ORTHO05D009481 3.7e-36 156.0 239 37.2
SHI10184 Sapria himalayana HOM05D007471 ORTHO05D009481 3.1e-35 152.9 156 45.5
SEGI_00651 Sequoiadendron giganteum HOM05D007471 ORTHO05D009481 9.1e-27 124.8 247 31.6
Peaxi162Scf00289g00310 Petunia axillaris HOM05D007471 ORTHO05D009481 4.9e-20 102.4 94 53.2
ClCG02G003080 Citrullus lanatus HOM05D007471 ORTHO05D009481 1.3e-12 77.8 73 50.7
FAN05G5088 Fragaria x ananassa HOM05D000100 ORTHO05D000052 1.7e-12 77.4 70 50.0
Ah.10g032600 Amaranthus hybridus HOM05D007471 ORTHO05D009481 6.0e-10 68.9 70 51.4
Lsat_1_v5_gn_3_93600 Lactuca sativa HOM05D007471 ORTHO05D233800 3.9e-09 66.2 89 41.6
Peaxi162Scf00289g00039 Petunia axillaris HOM05D007471 ORTHO05D009481 2.3e-06 57.0 57 42.1
MBI14_g37361_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 8.9e-06 55.1 44 52.3


User provided reference genes

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