Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 0.0e+00 1201.4 612 100.0
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 0.0e+00 1083.9 619 90.8
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 2.4e-310 1068.1 618 89.0
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 3.5e-309 1064.3 619 88.9
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 1.1e-307 1059.3 642 86.0
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 1.5e-304 1048.9 657 84.2
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 1.7e-303 1045.4 620 87.3
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 1.6e-301 1038.9 620 87.1
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 1.5e-299 1032.3 616 86.9
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 1.9e-299 1031.9 620 86.1
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 3.3e-299 1031.2 620 86.1
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 3.6e-298 1027.7 620 86.0
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 6.2e-298 1026.9 620 85.0
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 8.1e-298 1026.5 617 85.1
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 1.4e-297 1025.8 619 85.3
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 6.8e-297 1023.5 619 85.5
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 3.4e-296 1021.1 617 84.0
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 4.4e-296 1020.8 620 85.5
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 7.6e-296 1020.0 620 85.2
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 1.7e-295 1018.8 618 84.3
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 4.9e-295 1017.3 619 85.1
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 6.4e-295 1016.9 620 84.8
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 8.4e-295 1016.5 617 84.3
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 1.1e-294 1016.1 619 84.2
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 2.4e-294 1015.0 620 84.5
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 3.2e-294 1014.6 619 84.5
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 5.4e-294 1013.8 619 84.2
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 2.1e-293 1011.9 619 84.3
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 3.9e-292 1007.7 619 83.7
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 4.3e-291 1004.2 622 83.4
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 4.3e-291 1004.2 626 83.1
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 5.6e-291 1003.8 619 84.2
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 1.8e-289 998.8 618 82.4
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 2.4e-289 998.4 754 72.9
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 3.1e-289 998.0 619 83.4
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 9.0e-289 996.5 618 81.7
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 2.0e-288 995.3 630 82.2
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 7.6e-288 993.4 619 82.2
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 1.3e-287 992.6 620 83.1
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 1.7e-287 992.3 619 82.1
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 1.6e-282 975.7 619 81.6
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 3.1e-281 971.5 616 80.7
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 4.0e-281 971.1 686 76.1
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 2.6e-280 968.4 611 81.3
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 4.2e-278 961.1 614 79.3
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 9.3e-278 959.9 610 79.5
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 9.3e-278 959.9 614 79.2
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 7.9e-277 956.8 618 79.8
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 1.0e-276 956.4 618 78.3
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 1.3e-276 956.1 618 79.3
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 2.3e-276 955.3 646 76.8
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 2.3e-276 955.3 618 79.0
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 3.0e-276 954.9 620 80.0
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 5.1e-276 954.1 620 78.9
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 6.7e-276 953.7 618 79.3
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 6.7e-276 953.7 620 79.8
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 8.7e-276 953.4 620 79.7
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 8.7e-276 953.4 620 79.7
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 8.7e-276 953.4 618 79.0
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 1.3e-274 949.5 618 79.4
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 4.8e-274 947.6 618 79.0
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 1.8e-273 945.7 618 78.8
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 2.6e-272 941.8 616 77.3
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 7.6e-272 940.3 625 78.4
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 1.0e-271 939.9 616 76.9
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 1.1e-270 936.4 651 75.0
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 2.5e-270 935.3 619 77.7
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 9.3e-270 933.3 618 77.3
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 1.6e-269 932.6 615 78.2
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 1.3e-268 929.5 624 77.6
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 1.8e-268 929.1 629 75.7
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 2.3e-268 928.7 615 76.9
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 2.3e-268 928.7 618 76.4
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 3.0e-268 928.3 617 78.3
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 3.3e-267 924.9 543 86.9
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 2.1e-266 922.2 618 77.0
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 2.8e-266 921.8 617 76.3
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 1.5e-264 916.0 576 81.6
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 3.2e-262 908.3 632 75.6
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 6.7e-260 900.6 616 76.3
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 6.3e-258 894.0 600 75.5
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 5.0e-255 884.4 616 72.2
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 3.2e-254 881.7 602 74.8
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 1.2e-253 879.8 640 72.5
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 6.1e-253 877.5 584 77.7
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 5.3e-249 864.4 518 84.6
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 1.2e-248 863.2 518 84.6
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 2.7e-245 852.0 617 70.8
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 1.8e-241 839.3 576 76.2
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 9.1e-241 837.0 514 84.4
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 6.5e-239 830.9 622 71.7
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 5.7e-235 817.8 616 69.5
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 4.8e-234 814.7 617 67.7
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 3.0e-220 768.8 468 82.9
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 6.8e-220 767.7 551 74.6
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 1.7e-218 763.1 447 86.8
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 4.9e-210 734.9 617 59.6
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 6.4e-210 734.6 559 71.4
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 5.8e-203 711.4 621 58.6
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 1.9e-190 669.8 617 56.1
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 1.6e-176 623.6 650 50.5
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 5.3e-172 608.6 362 87.8
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 6.9e-164 581.6 489 67.3
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 3.2e-161 572.8 343 88.0
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 2.3e-159 566.6 618 51.1
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 3.9e-159 565.8 361 81.4
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 1.4e-148 530.8 617 47.8
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 1.2e-144 517.7 392 71.4
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 4.2e-137 492.7 364 68.1
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 7.7e-123 445.3 594 45.5
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 1.1e-121 441.4 511 45.2
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 4.4e-118 429.5 288 81.9
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 7.7e-115 418.7 375 64.5
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 6.1e-104 382.5 455 51.6
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 3.0e-74 283.9 176 83.0
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.6e-72 278.1 172 83.7
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.3e-69 268.5 186 68.3
FAN15G2507 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.6e-59 235.0 134 88.1
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 1.8e-55 221.5 143 81.1
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 6.9e-55 219.5 150 80.0
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 1.9e-49 201.4 120 83.3
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 3.1e-47 194.1 151 68.2
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 7.6e-46 189.5 123 82.1
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.1e-44 185.7 139 68.3
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 3.9e-42 177.2 105 78.1
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 7.4e-41 172.9 107 81.3
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 1.4e-36 158.7 105 81.0
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 1.0e-34 152.5 176 51.1
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 1.9e-33 148.3 86 87.2
VMungo0647G1109 Vigna mungo HOM05D004954 ORTHO05D006267 9.0e-31 139.4 100 76.0
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 8.8e-26 122.9 73 83.6
SEGI_32998 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 2.2e-24 118.2 84 73.8
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 9.1e-23 112.8 106 50.9
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 1.3e-21 109.0 115 60.9
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 3.2e-20 104.4 59 81.4
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 5.5e-20 103.6 51 82.4
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 5.5e-20 103.6 51 82.4
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 7.9e-19 99.8 54 87.0
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 2.3e-18 98.2 76 65.8
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 9.7e-17 92.8 60 68.3
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 9.7e-17 92.8 60 68.3
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 1.8e-15 88.6 51 74.5
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 2.2e-13 81.6 48 91.7
MD05G1162500 Malus domestica HOM05D004954 ORTHO05D006267 2.9e-13 81.3 80 55.0
Glyma.09G284100 Glycine max HOM05D004954 ORTHO05D006267 3.8e-13 80.9 50 70.0
TAR375G0464 Trochodendron aralioides HOM05D004954 ORTHO05D006267 7.2e-12 76.6 42 83.3
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 1.3e-08 65.9 46 58.7
SEGI_31941 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.3e-08 65.9 38 76.3
QL09p053081 Quercus lobata HOM05D002786 ORTHO05D030058 3.7e-08 64.3 43 79.1
Hma1.2p1_0717F.1_g208260 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 9.1e-07 59.7 34 82.4
Hma1.2p1_2056F.1_g312790 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 2.0e-06 58.5 33 84.8


User provided reference genes

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