Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 8.9e-37 156.4 76 100.0
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.6e-33 145.6 71 100.0
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.6e-33 145.6 71 100.0
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.3e-24 115.9 76 78.9
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 5.0e-24 114.0 72 79.2
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 4.3e-23 110.9 72 75.0
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 1.2e-22 109.4 69 76.8
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 1.2e-22 109.4 75 72.0
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 1.6e-22 109.0 73 76.7
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 2.1e-22 108.6 72 79.2
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 6.2e-22 107.1 74 77.0
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 8.1e-22 106.7 73 74.0
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 1.8e-21 105.5 72 75.0
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 1.8e-21 105.5 72 73.6
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 2.3e-21 105.1 74 75.7
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 2.3e-21 105.1 72 69.4
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 3.1e-21 104.8 72 70.8
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 3.1e-21 104.8 72 73.6
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 4.0e-21 104.4 72 70.8
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 8.9e-21 103.2 74 74.3
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 8.9e-21 103.2 74 75.7
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.2e-20 102.8 72 69.4
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 2.6e-20 101.7 74 73.0
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 7.5e-20 100.1 76 65.8
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 7.5e-20 100.1 76 65.8
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.3e-19 99.4 74 68.9
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 1.3e-19 99.4 77 66.2
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 2.9e-19 98.2 75 66.7
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 2.9e-19 98.2 72 66.7
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 4.9e-19 97.4 74 70.3
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 4.9e-19 97.4 73 68.5
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 4.9e-19 97.4 74 66.2
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 4.9e-19 97.4 73 65.8
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 4.9e-19 97.4 72 66.7
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 6.4e-19 97.1 74 68.9
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 6.4e-19 97.1 73 68.5
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 8.3e-19 96.7 76 67.1
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 8.3e-19 96.7 74 70.3
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 8.3e-19 96.7 73 65.8
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 1.1e-18 96.3 73 67.1
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 1.1e-18 96.3 76 61.8
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 2.4e-18 95.1 74 70.3
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 2.4e-18 95.1 74 68.9
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 2.4e-18 95.1 72 66.7
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 3.2e-18 94.7 72 66.7
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 4.1e-18 94.4 74 68.9
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 4.1e-18 94.4 76 63.2
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 5.4e-18 94.0 74 68.9
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 7.1e-18 93.6 77 64.9
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 9.2e-18 93.2 74 70.3
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 9.2e-18 93.2 74 70.3
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 9.2e-18 93.2 74 62.2
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 9.2e-18 93.2 73 63.0
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 1.6e-17 92.4 74 66.2
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.6e-17 92.4 74 70.3
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.6e-17 92.4 74 68.9
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.6e-17 92.4 75 64.0
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.6e-17 92.4 75 65.3
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 1.6e-17 92.4 74 68.9
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.6e-17 92.4 74 66.2
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 2.1e-17 92.0 74 70.3
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 2.1e-17 92.0 64 71.9
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 2.1e-17 92.0 64 71.9
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 2.1e-17 92.0 74 56.8
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 2.1e-17 92.0 74 60.8
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 2.1e-17 92.0 74 66.2
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 2.1e-17 92.0 73 61.6
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 2.7e-17 91.7 75 66.7
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 2.7e-17 91.7 74 63.5
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 2.7e-17 91.7 74 62.2
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 2.7e-17 91.7 73 63.0
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 3.5e-17 91.3 74 68.9
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 3.5e-17 91.3 74 68.9
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 6.0e-17 90.5 75 65.3
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 6.0e-17 90.5 74 64.9
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 7.8e-17 90.1 74 64.9
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 7.8e-17 90.1 69 63.8
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 7.8e-17 90.1 76 60.5
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 1.0e-16 89.7 75 61.3
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 1.0e-16 89.7 73 68.5
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 1.0e-16 89.7 77 61.0
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 1.3e-16 89.4 73 64.4
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 1.3e-16 89.4 74 66.2
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 2.3e-16 88.6 72 59.7
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 3.0e-16 88.2 74 64.9
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 3.0e-16 88.2 77 62.3
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 3.9e-16 87.8 76 63.2
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 5.1e-16 87.4 75 64.0
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 5.1e-16 87.4 72 58.3
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 6.6e-16 87.0 75 58.7
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 6.6e-16 87.0 72 66.7
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 6.6e-16 87.0 75 58.7
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 6.6e-16 87.0 75 60.0
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 6.6e-16 87.0 75 60.0
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 6.6e-16 87.0 74 67.6
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 1.1e-15 86.3 74 63.5
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 1.5e-15 85.9 72 55.6
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 1.5e-15 85.9 77 58.4
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 1.5e-15 85.9 77 61.0
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 1.9e-15 85.5 74 63.5
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 3.3e-15 84.7 74 63.5
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 3.3e-15 84.7 74 62.2
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 3.3e-15 84.7 75 54.7
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 4.3e-15 84.3 75 56.0
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 5.6e-15 84.0 77 59.7
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 9.5e-15 83.2 77 58.4
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 1.2e-14 82.8 75 56.0
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 1.2e-14 82.8 75 57.3
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.2e-14 82.8 73 60.3
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 1.6e-14 82.4 78 60.3
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 1.6e-14 82.4 74 62.2
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 1.6e-14 82.4 76 56.6
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 1.6e-14 82.4 74 59.5
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 1.6e-14 82.4 72 56.9
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 2.1e-14 82.0 80 53.8
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 2.8e-14 81.6 73 58.9
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 2.8e-14 81.6 74 54.1
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 3.6e-14 81.3 68 64.7
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 4.7e-14 80.9 69 59.4
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 8.1e-14 80.1 74 60.8
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 8.1e-14 80.1 74 60.8
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 8.1e-14 80.1 75 53.3
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.1e-13 79.7 48 75.0
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 1.1e-13 79.7 72 61.1
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 1.1e-13 79.7 74 60.8
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 1.4e-13 79.3 74 59.5
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 2.4e-13 78.6 76 57.9
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 3.1e-13 78.2 73 53.4
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 5.2e-13 77.4 71 59.2
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 8.9e-13 76.6 73 58.9
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 8.9e-13 76.6 56 66.1
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 1.2e-12 76.3 72 58.3
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 1.2e-12 76.3 72 58.3
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 1.2e-12 76.3 72 58.3
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 9.9e-12 73.2 47 68.1
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 1.3e-11 72.8 102 48.0
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 2.2e-11 72.0 74 55.4
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 8.4e-11 70.1 74 54.1
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 4.1e-10 67.8 35 77.1
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 4.1e-10 67.8 35 77.1
arahy.Tifrunner.gnm1.ann1.0N5P6D Arachis hypogaea HOM05D004858 ORTHO05D005600 8.7e-08 60.1 51 68.6
arahy.Tifrunner.gnm1.ann1.HTA6FY Arachis hypogaea HOM05D004858 ORTHO05D005600 8.7e-08 60.1 51 68.6
SHI12046 Sapria himalayana HOM05D004858 ORTHO05D005600 8.7e-08 60.1 50 54.0


User provided reference genes

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