Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003750 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 3.7e-49 198.0 105 100.0
CSS0007727 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 2.5e-42 175.3 105 91.4
Actinidia27309 Actinidia chinensis HOM05D000086 ORTHO05D002912 1.4e-27 126.3 98 74.5
CSS0026020 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 1.3e-25 119.8 104 69.2
CSS0041085 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 1.3e-25 119.8 104 69.2
CSS0039652 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 1.7e-25 119.4 104 69.2
Dinv38814 Davidia involucrata HOM05D000086 ORTHO05D002912 1.4e-24 116.3 101 71.3
Manes.02G007100 Manihot esculenta HOM05D000086 ORTHO05D002912 1.2e-23 113.2 105 65.7
Cpa.g.sc15.6 Carica papaya HOM05D000086 ORTHO05D002912 1.6e-23 112.8 101 66.3
Manes.01G052600 Manihot esculenta HOM05D000086 ORTHO05D002912 3.5e-23 111.7 105 63.8
PGR031G3866 Punica granatum HOM05D000086 ORTHO05D002912 5.9e-23 110.9 105 65.7
Sabra01G0064700 Salix brachista HOM05D000086 ORTHO05D002912 5.9e-23 110.9 106 63.2
Potri.001G088400 Populus trichocarpa HOM05D000086 ORTHO05D002912 1.0e-22 110.2 102 64.7
Dinv37502 Davidia involucrata HOM05D000086 ORTHO05D002912 5.0e-22 107.8 100 67.0
Ciclev10024464m.g Citrus clementina HOM05D000086 ORTHO05D002912 1.9e-21 105.9 103 58.3
Gorai.004G266400 Gossypium raimondii HOM05D000086 ORTHO05D002912 3.2e-21 105.1 96 59.4
Prupe.5G124100 Prunus persica HOM05D000086 ORTHO05D002912 3.2e-21 105.1 98 63.3
Gohir.D08G249800 Gossypium hirsutum HOM05D000086 ORTHO05D002912 9.4e-21 103.6 97 59.8
Sp7g21970 Schrenkiella parvula HOM05D000086 ORTHO05D002912 1.2e-20 103.2 103 63.1
CARHR231420 Cardamine hirsuta HOM05D000086 ORTHO05D002912 1.6e-20 102.8 103 62.1
Thecc.08G165900 Theobroma cacao HOM05D000086 ORTHO05D002912 1.6e-20 102.8 99 60.6
BcaNung04249 Brassica carinata HOM05D000086 ORTHO05D002912 3.6e-20 101.7 110 57.3
C07p53290 Brassica napus HOM05D000086 ORTHO05D002912 3.6e-20 101.7 110 57.3
BolC7t45824H Brassica oleracea HOM05D000086 ORTHO05D002912 3.6e-20 101.7 110 57.3
Thhalv10026391m.g Eutrema salsugineum HOM05D000086 ORTHO05D002912 3.6e-20 101.7 103 62.1
Nn1g00280 Nelumbo nucifera HOM05D000086 ORTHO05D002912 6.1e-20 100.9 100 61.0
A01p15280 Brassica napus HOM05D000086 ORTHO05D002912 8.0e-20 100.5 103 61.2
BraA03t14556Z Brassica rapa HOM05D000086 ORTHO05D002912 8.0e-20 100.5 110 57.3
AL7G29290 Arabidopsis lyrata HOM05D000086 ORTHO05D002912 1.0e-19 100.1 103 62.1
AT4G24015 Arabidopsis thaliana HOM05D000086 ORTHO05D002912 1.0e-19 100.1 103 62.1
Solyc08g082680.3 Solanum lycopersicum HOM05D000086 ORTHO05D002912 1.4e-19 99.8 100 62.0
Sopen08g030900 Solanum pennellii HOM05D000086 ORTHO05D002912 1.4e-19 99.8 100 62.0
Aa31LG6G7220 Aethionema arabicum HOM05D000086 ORTHO05D002912 1.8e-19 99.4 100 61.0
Gohir.A08G229500 Gossypium hirsutum HOM05D000086 ORTHO05D002912 2.3e-19 99.0 97 57.7
MD14G1132500 Malus domestica HOM05D000086 ORTHO05D002912 2.3e-19 99.0 105 58.1
BcaNung01107 Brassica carinata HOM05D000086 ORTHO05D002912 3.0e-19 98.6 103 61.2
PGSC0003DMG400012137 Solanum tuberosum HOM05D000086 ORTHO05D002912 3.0e-19 98.6 92 64.1
DCAR_030429 Daucus carota HOM05D000086 ORTHO05D002912 4.0e-19 98.2 106 57.5
QL02p029662 Quercus lobata HOM05D000086 ORTHO05D002912 4.0e-19 98.2 101 61.4
Nitab4.5_0002367g0040 Nicotiana tabacum HOM05D000086 ORTHO05D002912 5.2e-19 97.8 99 59.6
Duzib116G0331 Durio zibethinus HOM05D000086 ORTHO05D002912 8.8e-19 97.1 110 57.3
MD06G1111300 Malus domestica HOM05D000086 ORTHO05D002912 8.8e-19 97.1 100 58.0
Actinidia02522 Actinidia chinensis HOM05D000086 ORTHO05D002912 1.5e-18 96.3 96 61.5
Haze_09101 Corylus avellana HOM05D000086 ORTHO05D002912 1.5e-18 96.3 96 57.3
Potri.003G142600 Populus trichocarpa HOM05D000086 ORTHO05D002912 1.5e-18 96.3 99 58.6
MBI06_g10868_MAGBIO Magnolia biondii HOM05D000086 ORTHO05D002912 2.0e-18 95.9 108 59.3
Oeu030887.1 Olea europaea HOM05D000086 ORTHO05D002912 2.0e-18 95.9 93 61.3
CANSAT21G1707 Cannabis sativa HOM05D000086 ORTHO05D002912 2.6e-18 95.5 103 58.3
Glyma.08G024800 Glycine max HOM05D000086 ORTHO05D002912 2.6e-18 95.5 109 57.8
GSVIVG01019592001 Vitis vinifera HOM05D000086 ORTHO05D002912 4.4e-18 94.7 102 58.8
Lj2A163T68 Lonicera japonica HOM05D000086 ORTHO05D002912 5.7e-18 94.4 91 60.4
Lj4g0025211 Lotus japonicus HOM05D000086 ORTHO05D002912 5.7e-18 94.4 103 54.4
CiPaw.12G080900 Carya illinoinensis HOM05D000086 ORTHO05D002912 1.3e-17 93.2 108 55.6
Oeu022695.1 Olea europaea HOM05D000086 ORTHO05D002912 1.3e-17 93.2 102 55.9
EL10Ac5g12948 Beta vulgaris HOM05D000086 ORTHO05D002912 1.7e-17 92.8 98 56.1
A03p54910 Brassica napus HOM05D000086 ORTHO05D002912 1.7e-17 92.8 110 54.5
FvH4_5g11670 Fragaria vesca HOM05D000086 ORTHO05D002912 1.7e-17 92.8 92 63.0
FAN18G1358 Fragaria x ananassa HOM05D000086 ORTHO05D002912 1.7e-17 92.8 92 63.0
FAN18G4267 Fragaria x ananassa HOM05D000086 ORTHO05D002912 1.7e-17 92.8 92 63.0
Glyma.05G218700 Glycine max HOM05D000086 ORTHO05D002912 1.7e-17 92.8 108 58.3
Psat5g108400 Pisum sativum HOM05D000086 ORTHO05D002912 2.2e-17 92.4 100 57.0
Hma1.2p1_0440F.1_g153540 Hydrangea macrophylla HOM05D000086 ORTHO05D002912 2.8e-17 92.0 80 68.8
FAN13G2692 Fragaria x ananassa HOM05D000086 ORTHO05D002912 4.8e-17 91.3 92 62.0
arahy.Tifrunner.gnm1.ann1.60J8GE Arachis hypogaea HOM05D000086 ORTHO05D002912 6.3e-17 90.9 104 55.8
COL.COLO4_25065 Corchorus olitorius HOM05D000086 ORTHO05D002912 6.3e-17 90.9 102 55.9
Glyma.13G002800 Glycine max HOM05D000086 ORTHO05D002912 6.3e-17 90.9 99 59.6
Lsat_1_v5_gn_6_71661 Lactuca sativa HOM05D000086 ORTHO05D002912 6.3e-17 90.9 102 56.9
arahy.Tifrunner.gnm1.ann1.1IN0XH Arachis hypogaea HOM05D000086 ORTHO05D002912 8.3e-17 90.5 104 55.8
Eucgr.D01770 Eucalyptus grandis HOM05D000086 ORTHO05D002912 8.3e-17 90.5 95 60.0
VMungo0251G0743 Vigna mungo HOM05D000086 ORTHO05D002912 1.1e-16 90.1 107 57.9
FAN08G2033 Fragaria x ananassa HOM05D000086 ORTHO05D002912 1.4e-16 89.7 92 62.0
MSTRG.10181 Avicennia marina HOM05D002688 ORTHO05D002911 1.8e-16 89.4 101 56.4
Phvul.002G300500 Phaseolus vulgaris HOM05D000086 ORTHO05D002912 3.1e-16 88.6 106 56.6
Peaxi162Scf00074g00527 Petunia axillaris HOM05D000086 ORTHO05D002912 4.1e-16 88.2 99 58.6
Nn3g18960 Nelumbo nucifera HOM05D000086 ORTHO05D002912 5.4e-16 87.8 94 59.6
Lj6g0016186 Lotus japonicus HOM05D000086 ORTHO05D002912 7.0e-16 87.4 110 52.7
MBI07_g24778_MAGBIO Magnolia biondii HOM05D000086 ORTHO05D002912 7.0e-16 87.4 100 56.0
Medtr3g081030 Medicago truncatula HOM05D000086 ORTHO05D002912 7.0e-16 87.4 99 55.6
BraA01t01471Z Brassica rapa HOM05D000086 ORTHO05D002912 9.1e-16 87.0 103 56.3
SGA_v2.0_scaffold64G22042 Striga asiatica HOM05D000086 ORTHO05D002912 9.1e-16 87.0 100 57.0
BcaC09g50923 Brassica carinata HOM05D000086 ORTHO05D002912 1.2e-15 86.7 103 56.3
C01p19210 Brassica napus HOM05D000086 ORTHO05D002912 1.2e-15 86.7 103 56.3
BolC1t01848H Brassica oleracea HOM05D000086 ORTHO05D002912 1.2e-15 86.7 103 56.3
AUR62019872 Chenopodium quinoa HOM05D000086 ORTHO05D002912 1.2e-15 86.7 100 53.0
ECA233G6093 Erigeron canadensis HOM05D000086 ORTHO05D002912 1.2e-15 86.7 104 53.8
Lalb_Chr16g0390721 Lupinus albus HOM05D000086 ORTHO05D002912 2.0e-15 85.9 106 53.8
Lalb_Chr09g0332221 Lupinus albus HOM05D000086 ORTHO05D002912 2.7e-15 85.5 102 54.9
HanXRQChr10g0316891 Helianthus annuus HOM05D000086 ORTHO05D002912 1.0e-14 83.6 104 54.8
Lalb_Chr05g0223981 Lupinus albus HOM05D000086 ORTHO05D002912 1.7e-14 82.8 102 55.9
RcHm_v2.0_Chr7g0186121 Rosa chinensis HOM05D000086 ORTHO05D002912 1.7e-14 82.8 101 55.4
TPR.G33602 Trifolium pratense HOM05D000086 ORTHO05D002912 1.7e-14 82.8 97 53.6
PSO135G0157 Papaver somniferum HOM05D000086 ORTHO05D002912 2.9e-14 82.0 101 55.4
PSO384G4716 Papaver somniferum HOM05D000086 ORTHO05D002912 5.0e-14 81.3 101 55.4
VMungo0540G0071 Vigna mungo HOM05D000086 ORTHO05D002912 5.0e-14 81.3 99 54.5
Cc08_g16350 Coffea canephora HOM05D000086 ORTHO05D002912 6.5e-14 80.9 104 50.0
FAN04G1292 Fragaria x ananassa HOM05D000086 ORTHO05D002912 1.1e-13 80.1 92 57.6
Phvul.006G000700 Phaseolus vulgaris HOM05D000086 ORTHO05D002912 1.1e-13 80.1 96 57.3
Glyma.20G066300 Glycine max HOM05D000086 ORTHO05D002912 1.5e-13 79.7 99 55.6
Lj6A699T66 Lonicera japonica HOM05D000086 ORTHO05D002912 2.5e-13 79.0 104 49.0
HanXRQChr07g0190771 Helianthus annuus HOM05D000086 ORTHO05D002912 1.2e-12 76.6 109 48.6
Sed0016681 Sechium edule HOM05D000086 ORTHO05D002912 1.4e-11 73.2 101 47.5
Lsat_1_v5_gn_6_9501 Lactuca sativa HOM05D000086 ORTHO05D002912 2.3e-11 72.4 113 48.7
CSS0008003 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 2.2e-09 65.9 107 44.9
PGSC0003DMG400033135 Solanum tuberosum HOM05D000086 ORTHO05D002912 2.2e-09 65.9 80 50.0
Solyc06g064440.3 Solanum lycopersicum HOM05D000086 ORTHO05D002912 2.8e-09 65.5 80 50.0
Atru.chr13.2582 Acer truncatum HOM05D000086 ORTHO05D002912 3.7e-09 65.1 97 45.4
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 3.7e-09 65.1 82 48.8
CSS0024757 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 4.9e-09 64.7 107 43.9
Aqoxy7G00064 Aquilegia oxysepala HOM05D000086 ORTHO05D002912 6.3e-09 64.3 101 44.6
Sabra13G0081100 Salix brachista HOM05D000086 ORTHO05D002912 6.3e-09 64.3 95 42.1
Aqoxy5G01852 Aquilegia oxysepala HOM05D000086 ORTHO05D002912 8.3e-09 63.9 82 51.2
TAR628G0190 Trochodendron aralioides HOM05D000086 ORTHO05D002912 8.3e-09 63.9 82 48.8
GSVIVG01037142001 Vitis vinifera HOM05D000086 ORTHO05D002912 8.3e-09 63.9 102 46.1
Ciclev10021842m.g Citrus clementina HOM05D000086 ORTHO05D002912 1.8e-08 62.8 97 42.3
AT1G33480 Arabidopsis thaliana HOM05D000086 ORTHO05D002912 4.1e-08 61.6 96 40.6
Carub.0001s3167 Capsella rubella HOM05D000086 ORTHO05D002912 4.1e-08 61.6 99 41.4
Nitab4.5_0001489g0050 Nicotiana tabacum HOM05D000086 ORTHO05D002912 4.1e-08 61.6 100 42.0
Potri.013G095100 Populus trichocarpa HOM05D000086 ORTHO05D002912 4.1e-08 61.6 82 46.3
Cpa.g.sc142.5 Carica papaya HOM05D000086 ORTHO05D002912 5.4e-08 61.2 101 40.6
TWI12G1094 Tripterygium wilfordii HOM05D000086 ORTHO05D002912 9.2e-08 60.5 98 40.8
Actinidia29365 Actinidia chinensis HOM05D000086 ORTHO05D002912 1.2e-07 60.1 96 42.7
MSTRG.1610 Avicennia marina HOM05D000086 ORTHO05D002912 1.6e-07 59.7 85 47.1
Gohir.A03G080900 Gossypium hirsutum HOM05D000086 ORTHO05D002912 1.6e-07 59.7 94 42.6
Lj9A695T55 Lonicera japonica HOM05D000086 ORTHO05D002912 1.6e-07 59.7 92 42.4
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 1.6e-07 59.7 82 42.7
MBI06_g32151_MAGBIO Magnolia biondii HOM05D000086 ORTHO05D002912 2.0e-07 59.3 96 43.8
Duzib116G0004 Durio zibethinus HOM05D000086 ORTHO05D002912 2.7e-07 58.9 80 42.5
Peaxi162Scf00818g00319 Petunia axillaris HOM05D000086 ORTHO05D002912 3.5e-07 58.5 81 44.4
Sed0026122 Sechium edule HOM05D000086 ORTHO05D002912 3.5e-07 58.5 108 43.5
vmacro13884 Vaccinium macrocarpon HOM05D000086 ORTHO05D002912 3.5e-07 58.5 48 62.5
Lalb_Chr19g0131911 Lupinus albus HOM05D000086 ORTHO05D002912 4.5e-07 58.2 83 43.4
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 4.5e-07 58.2 99 38.4
Aa31LG6G7950 Aethionema arabicum HOM05D000086 ORTHO05D002912 5.9e-07 57.8 85 41.2
Migut.G00009 Erythranthe guttata HOM05D000086 ORTHO05D002912 5.9e-07 57.8 101 43.6
Hma1.2p1_0016F.1_g010970 Hydrangea macrophylla HOM05D000086 ORTHO05D002912 5.9e-07 57.8 88 45.5
Atru.chr9.1938 Acer truncatum HOM05D000086 ORTHO05D002912 7.7e-07 57.4 93 40.9
Medtr4g030070 Medicago truncatula HOM05D000086 ORTHO05D002912 7.7e-07 57.4 81 40.7
Nn5g27230 Nelumbo nucifera HOM05D000086 ORTHO05D002912 7.7e-07 57.4 83 44.6
Nitab4.5_0007335g0030 Nicotiana tabacum HOM05D000086 ORTHO05D002912 7.7e-07 57.4 80 46.2
Oeu020628.1 Olea europaea HOM05D000086 ORTHO05D002912 7.7e-07 57.4 83 47.0
Psat7g229760 Pisum sativum HOM05D000086 ORTHO05D002912 7.7e-07 57.4 81 42.0
SMO358G0642 Selaginella moellendorffii HOM05D000086 ORTHO05D002912 7.7e-07 57.4 85 41.2
ClCG01G001780 Citrullus lanatus HOM05D000086 ORTHO05D002912 1.0e-06 57.0 105 42.9
DCAR_002543 Daucus carota HOM05D000086 ORTHO05D002912 1.0e-06 57.0 96 45.8
Manes.18G109000 Manihot esculenta HOM05D000086 ORTHO05D002912 1.0e-06 57.0 82 43.9
Sp6g07260 Schrenkiella parvula HOM05D000086 ORTHO05D002912 1.0e-06 57.0 77 42.9
CARHR032920 Cardamine hirsuta HOM05D000086 ORTHO05D002912 1.3e-06 56.6 93 40.9
A02p26680 Brassica napus HOM05D000086 ORTHO05D002912 1.7e-06 56.2 80 42.5
BolC2t10283H Brassica oleracea HOM05D000086 ORTHO05D002912 1.7e-06 56.2 80 42.5
BraA02t07673Z Brassica rapa HOM05D000086 ORTHO05D002912 1.7e-06 56.2 80 42.5
MELO3C005760.2 Cucumis melo HOM05D000086 ORTHO05D002912 1.7e-06 56.2 36 77.8
CsaV3_5G001920 Cucumis sativus L. HOM05D000086 ORTHO05D002912 1.7e-06 56.2 36 77.8
Thhalv10009296m.g Eutrema salsugineum HOM05D000086 ORTHO05D002912 1.7e-06 56.2 82 40.2
Thhalv10028921m.g Eutrema salsugineum HOM05D000086 ORTHO05D002912 1.7e-06 56.2 94 39.4
A09p32790 Brassica napus HOM05D000086 ORTHO05D002912 2.9e-06 55.5 80 41.2
THA.LOC104813084 Tarenaya hassleriana HOM05D000086 ORTHO05D002912 2.9e-06 55.5 101 39.6
BcaC08g43850 Brassica carinata HOM05D000086 ORTHO05D002912 3.8e-06 55.1 98 36.7
C06p12330 Brassica napus HOM05D000086 ORTHO05D002912 3.8e-06 55.1 98 36.7
BolC6t36384H Brassica oleracea HOM05D000086 ORTHO05D002912 3.8e-06 55.1 98 36.7
BraA09t38814Z Brassica rapa HOM05D000086 ORTHO05D002912 3.8e-06 55.1 79 40.5
BcaB05g23913 Brassica carinata HOM05D000086 ORTHO05D002912 5.0e-06 54.7 80 41.2
TPR.G4399 Trifolium pratense HOM05D000086 ORTHO05D002912 5.0e-06 54.7 80 41.2
Zm00001eb243920 Zea mays HOM05D000086 ORTHO05D002912 5.0e-06 54.7 81 40.7
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 6.6e-06 54.3 82 37.8
Peaxi162Scf00078g01140 Petunia axillaris HOM05D000086 ORTHO05D002912 6.6e-06 54.3 78 39.7
THA.LOC104815780 Tarenaya hassleriana HOM05D000086 ORTHO05D002912 6.6e-06 54.3 95 36.8
GSVIVG01019585001 Vitis vinifera HOM05D000086 ORTHO05D002912 6.6e-06 54.3 71 57.7
Migut.O00395 Erythranthe guttata HOM05D000086 ORTHO05D002912 8.6e-06 53.9 99 42.4


User provided reference genes

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