Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003718 Camellia sinensis var. sinensis HOM05D006406 ORTHO05D007883 1.1e-181 639.8 319 100.0
vmacro04816 Vaccinium macrocarpon HOM05D006406 ORTHO05D007883 1.3e-126 456.8 359 68.2
Actinidia35561 Actinidia chinensis HOM05D006406 ORTHO05D007883 8.9e-123 444.1 349 68.5
Rhsim07G0188300 Rhododendron simsii HOM05D006406 ORTHO05D007883 5.8e-122 441.4 348 69.0
Haze_04140 Corylus avellana HOM05D006406 ORTHO05D007883 1.8e-115 419.9 347 63.4
Hma1.2p1_1212F.1_g267260 Hydrangea macrophylla HOM05D006406 ORTHO05D007883 6.9e-115 417.9 344 63.1
Cfa006628 Carpinus fangiana HOM05D006406 ORTHO05D007883 9.0e-115 417.5 347 64.8
Ciclev10001711m.g Citrus clementina HOM05D006406 ORTHO05D007883 4.4e-114 415.2 350 61.7
Thecc.05G312900 Theobroma cacao HOM05D006406 ORTHO05D007883 7.6e-114 414.5 348 62.6
QL03p020986 Quercus lobata HOM05D006406 ORTHO05D007883 1.3e-113 413.7 347 64.0
Duzib177G0190 Durio zibethinus HOM05D006406 ORTHO05D007883 2.9e-113 412.5 343 61.5
Manes.08G117600 Manihot esculenta HOM05D006406 ORTHO05D007883 3.8e-113 412.1 345 61.7
CiPaw.08G161900 Carya illinoinensis HOM05D006406 ORTHO05D007883 6.4e-113 411.4 348 62.4
COL.COLO4_10518 Corchorus olitorius HOM05D006406 ORTHO05D007883 1.1e-112 410.6 348 60.3
TAR633G0157 Trochodendron aralioides HOM05D006406 ORTHO05D007883 3.2e-112 409.1 357 62.2
GSVIVG01031144001 Vitis vinifera HOM05D006406 ORTHO05D007883 3.5e-111 405.6 351 61.3
Glyma.03G235700 Glycine max HOM05D006406 ORTHO05D007883 7.9e-111 404.4 341 60.7
QL03p021882 Quercus lobata HOM05D006406 ORTHO05D007883 2.3e-110 402.9 347 62.2
Oeu043348.1 Olea europaea HOM05D006406 ORTHO05D007883 3.0e-110 402.5 342 61.7
MD04G1200800 Malus domestica HOM05D006406 ORTHO05D007883 3.9e-110 402.1 306 66.7
Nitab4.5_0003658g0090 Nicotiana tabacum HOM05D006406 ORTHO05D007883 2.5e-109 399.4 313 63.9
Potri.013G017100 Populus trichocarpa HOM05D006406 ORTHO05D007883 2.5e-109 399.4 356 60.1
Sabra13G0015900 Salix brachista HOM05D006406 ORTHO05D007883 3.3e-109 399.1 347 60.5
Sabra13G0020100 Salix brachista HOM05D006406 ORTHO05D007883 3.3e-109 399.1 347 60.5
Peaxi162Scf00037g01125 Petunia axillaris HOM05D006406 ORTHO05D007883 4.3e-109 398.7 330 62.7
CsaV3_1G038840 Cucumis sativus L. HOM05D006406 ORTHO05D007883 5.6e-109 398.3 343 58.9
Gorai.013G125700 Gossypium raimondii HOM05D006406 ORTHO05D007883 3.6e-108 395.6 351 59.0
Atru.chr2.29 Acer truncatum HOM05D006406 ORTHO05D007883 4.8e-108 395.2 341 60.1
arahy.Tifrunner.gnm1.ann1.Q6XDLT Arachis hypogaea HOM05D006406 ORTHO05D007883 1.4e-107 393.7 340 59.4
Gohir.A13G109200 Gossypium hirsutum HOM05D006406 ORTHO05D007883 1.4e-107 393.7 350 58.6
RcHm_v2.0_Chr3g0455711 Rosa chinensis HOM05D006406 ORTHO05D007883 1.4e-107 393.7 350 61.7
Nn4g25830 Nelumbo nucifera HOM05D006406 ORTHO05D007883 1.8e-107 393.3 365 58.1
Lj9C146T2 Lonicera japonica HOM05D006406 ORTHO05D007883 2.4e-107 392.9 305 64.6
Lalb_Chr18g0045761 Lupinus albus HOM05D006406 ORTHO05D007883 2.4e-107 392.9 344 59.9
PGR083G2713 Punica granatum HOM05D006406 ORTHO05D007883 3.1e-107 392.5 299 65.2
Phvul.006G089700 Phaseolus vulgaris HOM05D006406 ORTHO05D007883 4.0e-107 392.1 335 59.1
Sc16g0008820 Simmondsia chinensis HOM05D006406 ORTHO05D007883 4.0e-107 392.1 350 59.7
VMungo0540G0116 Vigna mungo HOM05D006406 ORTHO05D007883 4.0e-107 392.1 343 60.3
TWI12G0288 Tripterygium wilfordii HOM05D006406 ORTHO05D007883 1.2e-106 390.6 342 60.5
Lj1g0022852 Lotus japonicus HOM05D006406 ORTHO05D007883 2.6e-106 389.4 341 58.7
Eucgr.B01914 Eucalyptus grandis HOM05D006406 ORTHO05D007883 4.5e-106 388.7 368 57.6
Sopen01g043220 Solanum pennellii HOM05D006406 ORTHO05D007883 4.5e-106 388.7 340 58.8
arahy.Tifrunner.gnm1.ann1.PP7FUY Arachis hypogaea HOM05D006406 ORTHO05D007883 5.8e-106 388.3 340 58.5
Aqoxy5G00730 Aquilegia oxysepala HOM05D006406 ORTHO05D007883 9.9e-106 387.5 302 63.2
CAN.G1459.10 Capsicum annuum HOM05D006406 ORTHO05D007883 1.7e-105 386.7 308 63.6
Solyc01g099700.3 Solanum lycopersicum HOM05D006406 ORTHO05D007883 1.7e-105 386.7 340 58.5
Cpa.g.sc48.95 Carica papaya HOM05D006406 ORTHO05D007883 2.9e-105 386.0 341 59.5
Nitab4.5_0003844g0020 Nicotiana tabacum HOM05D006406 ORTHO05D007883 2.9e-105 386.0 332 61.1
ClCG03G017120 Citrullus lanatus HOM05D006406 ORTHO05D007883 1.9e-104 383.3 345 57.4
Sed0006495 Sechium edule HOM05D006406 ORTHO05D007883 1.9e-104 383.3 347 57.3
Medtr7g112650 Medicago truncatula HOM05D006406 ORTHO05D007883 4.2e-104 382.1 338 58.0
Gohir.D13G112000 Gossypium hirsutum HOM05D006406 ORTHO05D007883 5.4e-104 381.7 318 60.4
TPR.G33225 Trifolium pratense HOM05D006406 ORTHO05D007883 1.2e-103 380.6 341 58.9
PGSC0003DMG400007542 Solanum tuberosum HOM05D006406 ORTHO05D007883 2.3e-102 376.3 297 62.6
Carub.0006s2486 Capsella rubella HOM05D006406 ORTHO05D007883 3.0e-102 375.9 348 57.2
Ca_05800_v3 Cicer arietinum L. HOM05D006406 ORTHO05D007883 5.1e-102 375.2 334 57.5
Sp2g20880 Schrenkiella parvula HOM05D006406 ORTHO05D007883 6.7e-102 374.8 348 57.2
Hund07097 Selenicereus undatus HOM05D006406 ORTHO05D007883 8.7e-102 374.4 288 62.5
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 1.5e-101 373.6 313 62.0
Psat0s27g0120 Pisum sativum HOM05D006406 ORTHO05D007883 1.9e-101 373.2 333 58.3
TWI36G0652 Tripterygium wilfordii HOM05D006406 ORTHO05D007883 3.3e-101 372.5 342 57.3
Thhalv10005730m.g Eutrema salsugineum HOM05D006406 ORTHO05D007883 9.6e-101 370.9 345 58.3
SalBow7G2778 Salvia bowleyana HOM05D006406 ORTHO05D007883 9.6e-101 370.9 292 63.4
unitig_52.g17112 Utricularia gibba HOM05D006406 ORTHO05D007883 9.6e-101 370.9 347 57.6
Prupe.6G320900 Prunus persica HOM05D006406 ORTHO05D007883 1.6e-100 370.2 324 62.0
Hund07096 Selenicereus undatus HOM05D006406 ORTHO05D007883 2.1e-100 369.8 341 56.9
SGA_v2.0_scaffold172G38986 Striga asiatica HOM05D006406 ORTHO05D007883 2.1e-100 369.8 346 56.9
MBI18_g46420_MAGBIO Magnolia biondii HOM05D006406 ORTHO05D007883 2.8e-100 369.4 345 57.1
AT5G27710 Arabidopsis thaliana HOM05D006406 ORTHO05D007883 8.1e-100 367.9 350 55.4
EL10Ac4g09916 Beta vulgaris HOM05D006406 ORTHO05D007883 1.1e-99 367.5 310 59.4
THA.LOC104818716 Tarenaya hassleriana HOM05D006406 ORTHO05D007883 1.4e-99 367.1 351 57.3
Aa31LG11G9460 Aethionema arabicum HOM05D006406 ORTHO05D007883 5.3e-99 365.2 344 56.1
CANSAT54G1062 Cannabis sativa HOM05D006406 ORTHO05D007883 2.6e-98 362.8 352 55.4
AL6G39250 Arabidopsis lyrata HOM05D006406 ORTHO05D007883 1.0e-97 360.9 351 53.8
Migut.N01744 Erythranthe guttata HOM05D006406 ORTHO05D007883 1.2e-95 354.0 338 57.4
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 3.5e-95 352.4 309 60.2
A09p05410 Brassica napus HOM05D006406 ORTHO05D007883 5.1e-94 348.6 347 56.2
PSO210G1514 Papaver somniferum HOM05D006406 ORTHO05D007883 5.1e-94 348.6 348 56.0
BraA09t36179Z Brassica rapa HOM05D006406 ORTHO05D007883 6.7e-94 348.2 347 56.2
Lsat_1_v5_gn_9_88181 Lactuca sativa HOM05D006406 ORTHO05D007883 9.6e-93 344.4 358 53.6
BcaB04g19684 Brassica carinata HOM05D006406 ORTHO05D007883 1.6e-92 343.6 347 55.3
PSO210G1688 Papaver somniferum HOM05D006406 ORTHO05D007883 2.1e-92 343.2 349 55.6
ECA236G2290 Erigeron canadensis HOM05D006406 ORTHO05D007883 2.8e-92 342.8 281 60.9
AUR62000764 Chenopodium quinoa HOM05D006406 ORTHO05D007883 8.2e-92 341.3 288 58.7
CARHR186230 Cardamine hirsuta HOM05D006406 ORTHO05D007883 5.3e-91 338.6 320 56.6
HanXRQChr11g0339311 Helianthus annuus HOM05D006406 ORTHO05D007883 5.3e-91 338.6 313 58.1
BcaC04g23642 Brassica carinata HOM05D006406 ORTHO05D007883 5.0e-89 332.0 348 53.7
C09p05890 Brassica napus HOM05D006406 ORTHO05D007883 1.2e-87 327.4 349 53.9
BolC9t53515H Brassica oleracea HOM05D006406 ORTHO05D007883 1.2e-87 327.4 349 53.9
Os07g0673000 Oryza sativa ssp. japonica HOM05D006406 ORTHO05D007883 1.6e-87 327.0 264 58.3
CDE11G0411 Ceratophyllum demersum HOM05D001335 ORTHO05D001184 7.9e-87 324.7 308 54.9
Cc02_g34120 Coffea canephora HOM05D006406 ORTHO05D007883 1.1e-85 320.9 215 71.2
Dinv30810 Davidia involucrata HOM05D006406 ORTHO05D007883 1.1e-85 320.9 289 61.6
AUR62005205 Chenopodium quinoa HOM05D006406 ORTHO05D007883 1.1e-83 314.3 315 52.4
DCAR_029393 Daucus carota HOM05D006406 ORTHO05D007883 1.4e-83 313.9 347 50.1
ATR0796G153 Amborella trichopoda HOM05D006406 ORTHO05D007883 5.0e-81 305.4 245 60.0
Glyma.19G233500 Glycine max HOM05D006406 ORTHO05D007883 8.5e-81 304.7 286 57.3
Ah.06g189770 Amaranthus hybridus HOM05D006406 ORTHO05D007883 1.4e-80 303.9 264 58.0
SEGI_05797 Sequoiadendron giganteum HOM05D006406 ORTHO05D007883 2.2e-76 290.0 288 50.3
MELO3C015308.2 Cucumis melo HOM05D006406 ORTHO05D007883 8.5e-73 278.1 332 47.3
FvH4_6g06560 Fragaria vesca HOM05D006406 ORTHO05D007883 8.2e-68 261.5 250 56.4
Hma1.2p1_1212F.1_g267270 Hydrangea macrophylla HOM05D006406 ORTHO05D007883 9.7e-61 238.0 208 61.5
Oeu043349.1 Olea europaea HOM05D006406 ORTHO05D007883 1.1e-56 224.6 206 60.2
Pp3c6_26830 Physcomitrium patens HOM05D006406 ORTHO05D007883 9.4e-56 221.5 327 38.5
SMO172G0153 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 3.6e-55 219.5 280 43.9
SMO172G0232 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 1.2e-53 214.5 282 41.8
Mapoly0054s0047 Marchantia polymorpha HOM05D006406 ORTHO05D007883 3.4e-53 213.0 314 37.9
PGSC0003DMG400024710 Solanum tuberosum HOM05D006406 ORTHO05D007883 9.8e-53 211.5 207 56.5
HPP92_011843 Vanilla planifolia HOM05D006406 ORTHO05D007883 2.8e-52 209.9 292 41.8
Zm00001eb111280 Zea mays HOM05D006406 ORTHO05D007883 3.5e-50 203.0 204 51.0
CBR_g19246 Chara braunii HOM05D006406 ORTHO05D007883 3.8e-41 172.9 233 37.3
arahy.Tifrunner.gnm1.ann1.AST3BR Arachis hypogaea HOM05D006406 ORTHO05D007883 1.2e-37 161.4 171 48.5
SMO198G0100 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 2.0e-37 160.6 282 35.8
MSTRG.16393 Avicennia marina HOM05D006406 ORTHO05D007883 1.3e-33 147.9 175 49.7
PSO421G0497 Papaver somniferum HOM05D006406 ORTHO05D007883 2.3e-33 147.1 304 33.9
FAN02G3513 Fragaria x ananassa HOM05D006406 ORTHO05D007883 4.3e-32 142.9 163 52.1
AagrBONN_evm.TU.Sc2ySwM_362.2555 Anthoceros agrestis HOM05D006406 ORTHO05D007883 7.3e-32 142.1 109 59.6
Lsat_1_v5_gn_5_186620 Lactuca sativa HOM05D006406 ORTHO05D007883 1.6e-18 97.8 165 38.2
BcaB07g32734 Brassica carinata HOM05D006406 ORTHO05D007883 4.6e-18 96.3 148 44.6
AL3G41450 Arabidopsis lyrata HOM05D000059 ORTHO05D000128 5.4e-11 72.8 44 70.5
Aqoxy601s001 Aquilegia oxysepala HOM05D006406 ORTHO05D007883 3.0e-09 67.0 37 78.4
Cre09.g392700 Chlamydomonas reinhardtii HOM05D006406 ORTHO05D007883 6.6e-09 65.9 107 41.1
SMO172G0225 Selaginella moellendorffii HOM05D006406 ORTHO05D007883 5.2e-06 56.2 76 39.5


User provided reference genes

Program Settings