Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.5e-98 362.8 179 100.0
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 2.0e-87 325.9 160 99.4
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 2.4e-85 318.9 160 96.2
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 2.4e-85 318.9 160 95.0
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 3.2e-85 318.5 160 95.0
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 5.4e-85 317.8 161 93.8
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 7.1e-85 317.4 160 95.0
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 7.1e-85 317.4 160 95.0
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 7.1e-85 317.4 160 93.8
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 9.2e-85 317.0 160 93.8
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 1.2e-84 316.6 160 95.0
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.2e-84 316.6 160 95.0
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.2e-84 316.6 160 95.0
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 1.2e-84 316.6 160 93.8
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 1.2e-84 316.6 160 96.2
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 1.6e-84 316.2 160 94.4
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 2.7e-84 315.5 160 93.8
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 2.7e-84 315.5 160 93.8
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 3.5e-84 315.1 162 93.8
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 3.5e-84 315.1 160 93.8
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 3.5e-84 315.1 158 94.9
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 3.5e-84 315.1 158 94.9
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 3.5e-84 315.1 160 94.4
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 4.6e-84 314.7 160 94.4
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 4.6e-84 314.7 160 93.8
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 4.6e-84 314.7 160 94.4
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 6.0e-84 314.3 160 93.1
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 1.0e-83 313.5 160 95.0
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 1.0e-83 313.5 160 93.1
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 1.7e-83 312.8 160 94.4
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 2.3e-83 312.4 160 93.8
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 2.3e-83 312.4 160 93.1
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 2.3e-83 312.4 160 92.5
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 2.3e-83 312.4 160 92.5
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 2.3e-83 312.4 171 90.1
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 2.3e-83 312.4 171 90.1
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 3.9e-83 311.6 160 91.9
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 3.9e-83 311.6 160 91.9
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 3.9e-83 311.6 160 95.0
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 5.1e-83 311.2 160 91.9
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 6.6e-83 310.8 160 90.0
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 6.6e-83 310.8 162 90.7
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 1.1e-82 310.1 160 92.5
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 1.1e-82 310.1 160 93.8
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 1.1e-82 310.1 160 91.2
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 1.1e-82 310.1 160 91.2
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 1.1e-82 310.1 168 91.7
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 1.5e-82 309.7 160 91.2
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 1.9e-82 309.3 161 90.7
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 1.9e-82 309.3 160 93.1
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 2.5e-82 308.9 173 87.9
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 4.3e-82 308.1 160 91.9
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 5.6e-82 307.8 160 91.9
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 5.6e-82 307.8 160 92.5
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 5.6e-82 307.8 160 90.0
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 7.3e-82 307.4 160 91.9
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 7.3e-82 307.4 160 91.2
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 9.6e-82 307.0 160 91.9
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 9.6e-82 307.0 160 93.1
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 1.3e-81 306.6 160 93.8
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 2.8e-81 305.4 183 82.5
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 2.8e-81 305.4 160 90.6
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 2.8e-81 305.4 160 90.6
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 2.8e-81 305.4 160 93.1
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 3.6e-81 305.1 160 91.9
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 3.6e-81 305.1 160 91.2
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 3.6e-81 305.1 187 81.8
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 4.8e-81 304.7 160 91.9
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 4.8e-81 304.7 160 92.5
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 6.2e-81 304.3 160 90.0
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 8.1e-81 303.9 160 90.6
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 8.1e-81 303.9 160 90.6
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 8.1e-81 303.9 160 90.6
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 1.1e-80 303.5 160 90.6
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 1.4e-80 303.1 160 90.6
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 1.8e-80 302.8 160 88.8
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 2.4e-80 302.4 160 90.0
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 2.4e-80 302.4 172 84.3
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 6.9e-80 300.8 174 86.2
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 9.0e-80 300.4 161 91.3
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 1.5e-79 299.7 161 89.4
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 2.6e-79 298.9 160 89.4
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 3.4e-79 298.5 176 84.1
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 3.4e-79 298.5 160 88.8
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 9.9e-79 297.0 160 86.2
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 9.9e-79 297.0 160 86.9
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 2.2e-78 295.8 197 75.6
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 3.8e-78 295.0 160 85.0
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 3.8e-78 295.0 160 85.6
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 6.4e-78 294.3 165 89.1
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 8.4e-78 293.9 159 87.4
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 1.9e-77 292.7 155 89.7
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 2.4e-77 292.4 160 85.0
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 3.2e-77 292.0 160 85.0
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 1.2e-76 290.0 165 81.2
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 1.2e-76 290.0 160 83.8
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 3.5e-76 288.5 161 82.6
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 3.5e-76 288.5 161 82.6
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 4.6e-76 288.1 161 82.6
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 6.0e-76 287.7 160 83.1
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 6.0e-76 287.7 161 82.0
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 7.8e-76 287.3 160 82.5
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 7.8e-76 287.3 158 84.2
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 3.9e-75 285.0 161 82.6
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 8.7e-75 283.9 160 82.5
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 2.5e-74 282.3 158 81.0
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 3.3e-74 282.0 158 81.6
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 7.3e-74 280.8 160 81.9
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 8.1e-73 277.3 160 80.0
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 9.0e-72 273.9 210 67.1
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 4.5e-71 271.6 161 77.6
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 5.8e-71 271.2 158 78.5
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 7.6e-71 270.8 161 77.0
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 5.4e-69 264.6 160 83.8
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 4.0e-64 248.4 130 91.5
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 1.4e-56 223.4 111 94.6
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 2.9e-54 215.7 160 66.2
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 6.5e-54 214.5 123 85.4
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 3.9e-51 205.3 107 86.9
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 8.7e-51 204.1 154 62.3
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 2.5e-50 202.6 158 58.2
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 2.5e-45 186.0 159 57.2
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 1.5e-39 166.8 121 68.6
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 5.9e-39 164.9 79 96.2
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 5.9e-39 164.9 101 80.2
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 1.3e-38 163.7 79 94.9
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 2.9e-38 162.5 81 92.6
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 3.8e-38 162.2 79 93.7
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 7.2e-37 157.9 82 87.8
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 1.0e-35 154.1 81 90.1
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 1.0e-35 154.1 81 91.4
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 3.9e-35 152.1 130 60.0
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 6.7e-35 151.4 81 90.1
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 1.5e-34 150.2 80 92.5
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 3.7e-33 145.6 81 87.7
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 3.7e-33 145.6 155 46.5
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 6.3e-33 144.8 71 93.0
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 4.5e-31 138.7 68 94.1
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 7.7e-31 137.9 68 91.2
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 2.3e-27 126.3 69 84.1
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 1.1e-26 124.0 69 82.6
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 1.1e-26 124.0 69 82.6
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 1.0e-19 100.9 51 88.2
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 1.7e-17 93.6 47 87.2
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 2.2e-14 83.2 50 82.0
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 4.7e-12 75.5 38 86.8
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 6.1e-12 75.1 44 75.0
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 6.1e-12 75.1 44 75.0
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 6.1e-12 75.1 44 75.0
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 6.1e-12 75.1 44 75.0


User provided reference genes

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