Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003699 Camellia sinensis var. sinensis HOM05D002816 ORTHO05D005633 1.5e-25 118.6 55 100.0
CSS0015622 Camellia sinensis var. sinensis HOM05D002816 ORTHO05D005633 1.5e-22 108.6 52 96.2
CSS0023415 Camellia sinensis var. sinensis HOM05D002816 ORTHO05D005633 1.5e-22 108.6 52 96.2
CSS0044925 Camellia sinensis var. sinensis HOM05D002816 ORTHO05D005633 1.5e-22 108.6 52 96.2
Lj1A364T31 Lonicera japonica HOM05D002816 ORTHO05D005633 7.9e-19 96.3 52 82.7
Lju1319A3T41 Lonicera japonica HOM05D002816 ORTHO05D005633 7.9e-19 96.3 52 82.7
Haze_23048 Corylus avellana HOM05D002816 ORTHO05D005633 1.0e-18 95.9 52 82.7
CiPaw.13G165300 Carya illinoinensis HOM05D002816 ORTHO05D005633 3.0e-18 94.4 52 82.7
Dinv36301 Davidia involucrata HOM05D002816 ORTHO05D005633 3.0e-18 94.4 52 80.8
ECA238G3506 Erigeron canadensis HOM05D002816 ORTHO05D005633 3.9e-18 94.0 52 78.8
Migut.D00561 Erythranthe guttata HOM05D002816 ORTHO05D005633 1.5e-17 92.0 52 76.9
Cfa009698 Carpinus fangiana HOM05D002816 ORTHO05D005633 4.3e-17 90.5 52 76.9
Lsat_1_v5_gn_2_101081 Lactuca sativa HOM05D002816 ORTHO05D005633 4.3e-17 90.5 52 75.0
DCAR_023760 Daucus carota HOM05D002816 ORTHO05D005633 5.7e-17 90.1 52 73.1
ECA233G1587 Erigeron canadensis HOM05D002816 ORTHO05D005633 5.7e-17 90.1 52 73.1
Hma1.2p1_2304F.1_g319340 Hydrangea macrophylla HOM05D002816 ORTHO05D005633 7.4e-17 89.7 52 75.0
QL01p006152 Quercus lobata HOM05D002816 ORTHO05D005633 9.6e-17 89.4 52 76.9
Actinidia16294 Actinidia chinensis HOM05D002816 ORTHO05D005633 1.3e-16 89.0 52 75.0
Lj3g0024115 Lotus japonicus HOM05D002816 ORTHO05D005633 1.3e-16 89.0 53 73.6
Medtr2g098490 Medicago truncatula HOM05D002816 ORTHO05D005633 1.3e-16 89.0 52 73.1
Cc01_g04090 Coffea canephora HOM05D002816 ORTHO05D005633 2.1e-16 88.2 52 73.1
TAR163G0001 Trochodendron aralioides HOM05D002816 ORTHO05D005633 2.1e-16 88.2 52 75.0
Oeu014059.1 Olea europaea HOM05D002816 ORTHO05D005633 2.8e-16 87.8 52 71.2
HanXRQChr02g0056791 Helianthus annuus HOM05D002816 ORTHO05D005633 3.7e-16 87.4 52 73.1
Sed0025537 Sechium edule HOM05D002816 ORTHO05D005633 3.7e-16 87.4 52 75.0
TWI75G1088 Tripterygium wilfordii HOM05D002816 ORTHO05D005633 3.7e-16 87.4 52 73.1
CAN.G388.65 Capsicum annuum HOM05D002816 ORTHO05D005633 4.8e-16 87.0 52 73.1
GSVIVG01025332001 Vitis vinifera HOM05D002816 ORTHO05D005633 4.8e-16 87.0 52 73.1
RcHm_v2.0_Chr5g0078141 Rosa chinensis HOM05D002816 ORTHO05D005633 6.2e-16 86.7 52 73.1
Solyc01g006640.1 Solanum lycopersicum HOM05D002816 ORTHO05D005633 6.2e-16 86.7 52 69.2
Sopen01g002630 Solanum pennellii HOM05D002816 ORTHO05D005633 6.2e-16 86.7 52 69.2
MBI04_g27132_MAGBIO Magnolia biondii HOM05D002816 ORTHO05D005633 8.2e-16 86.3 52 73.1
PGR119G0739 Punica granatum HOM05D002816 ORTHO05D005633 8.2e-16 86.3 52 73.1
CANSAT54G2844 Cannabis sativa HOM05D002816 ORTHO05D005633 1.1e-15 85.9 52 73.1
Nitab4.5_0009808g0040 Nicotiana tabacum HOM05D002816 ORTHO05D005633 1.1e-15 85.9 52 73.1
Atru.chr3.2512 Acer truncatum HOM05D002816 ORTHO05D005633 1.4e-15 85.5 52 71.2
Glyma.13G342600 Glycine max HOM05D002816 ORTHO05D005633 1.4e-15 85.5 52 69.2
Glyma.15G031700 Glycine max HOM05D002816 ORTHO05D005633 1.4e-15 85.5 52 69.2
Lj3g0016219 Lotus japonicus HOM05D002816 ORTHO05D005633 1.4e-15 85.5 52 69.2
MBI04_g27134_MAGBIO Magnolia biondii HOM05D002816 ORTHO05D005633 1.4e-15 85.5 52 73.1
VMungo1080G0972 Vigna mungo HOM05D002816 ORTHO05D005633 1.4e-15 85.5 52 71.2
ClCG02G023650 Citrullus lanatus HOM05D002816 ORTHO05D005633 1.8e-15 85.1 52 73.1
FvH4_3g43570 Fragaria vesca HOM05D002816 ORTHO05D005633 1.8e-15 85.1 52 71.2
FAN16G1696 Fragaria x ananassa HOM05D002816 ORTHO05D005633 1.8e-15 85.1 52 71.2
FAN21G1421 Fragaria x ananassa HOM05D002816 ORTHO05D005633 1.8e-15 85.1 52 71.2
FAN25G1910 Fragaria x ananassa HOM05D002816 ORTHO05D005633 1.8e-15 85.1 52 71.2
Os04g0473900 Oryza sativa ssp. japonica HOM05D002816 ORTHO05D005633 1.8e-15 85.1 53 69.8
Cc01_g04160 Coffea canephora HOM05D002816 ORTHO05D005633 2.4e-15 84.7 52 71.2
DCAR_029714 Daucus carota HOM05D002816 ORTHO05D005633 2.4e-15 84.7 52 71.2
Migut.N02292 Erythranthe guttata HOM05D002816 ORTHO05D005633 2.4e-15 84.7 52 73.1
Sopen01g002590 Solanum pennellii HOM05D002816 ORTHO05D005633 3.1e-15 84.3 52 69.2
CSS0039119 Camellia sinensis var. sinensis HOM05D002816 ORTHO05D005633 5.3e-15 83.6 52 67.3
Ciclev10017962m.g Citrus clementina HOM05D002816 ORTHO05D005633 5.3e-15 83.6 52 71.2
ECA233G2205 Erigeron canadensis HOM05D002816 ORTHO05D005633 5.3e-15 83.6 52 67.3
Gohir.A05G067400 Gossypium hirsutum HOM05D002816 ORTHO05D005633 5.3e-15 83.6 52 71.2
Gohir.D05G070300 Gossypium hirsutum HOM05D002816 ORTHO05D005633 5.3e-15 83.6 52 71.2
Gorai.009G071300 Gossypium raimondii HOM05D002816 ORTHO05D005633 5.3e-15 83.6 52 71.2
Peaxi162Scf00559g00421 Petunia axillaris HOM05D002816 ORTHO05D005633 5.3e-15 83.6 52 71.2
PGR119G2184 Punica granatum HOM05D002816 ORTHO05D005633 6.9e-15 83.2 52 71.2
vmacro22895 Vaccinium macrocarpon HOM05D002816 ORTHO05D005633 6.9e-15 83.2 51 70.6
Aqoxy1G00177 Aquilegia oxysepala HOM05D002816 ORTHO05D005633 9.0e-15 82.8 51 72.5
arahy.Tifrunner.gnm1.ann1.4LCW9K Arachis hypogaea HOM05D002816 ORTHO05D005633 9.0e-15 82.8 52 69.2
arahy.Tifrunner.gnm1.ann1.YK6NC6 Arachis hypogaea HOM05D002816 ORTHO05D005633 9.0e-15 82.8 52 69.2
Manes.14G014200 Manihot esculenta HOM05D002816 ORTHO05D005633 9.0e-15 82.8 53 67.9
Ca_20583_v3 Cicer arietinum L. HOM05D002816 ORTHO05D005633 1.2e-14 82.4 52 67.3
Eucgr.J00816 Eucalyptus grandis HOM05D002816 ORTHO05D005633 1.2e-14 82.4 52 67.3
SalBow5G4185 Salvia bowleyana HOM05D002816 ORTHO05D005633 1.5e-14 82.0 54 63.0
PGSC0003DMG400021382 Solanum tuberosum HOM05D002816 ORTHO05D005633 1.5e-14 82.0 51 68.6
CAN.G388.66 Capsicum annuum HOM05D002816 ORTHO05D005633 2.0e-14 81.6 52 65.4
Nitab4.5_0003796g0070 Nicotiana tabacum HOM05D002816 ORTHO05D005633 2.0e-14 81.6 52 67.3
TPR.G18840 Trifolium pratense HOM05D002816 ORTHO05D005633 2.0e-14 81.6 52 67.3
Lsat_1_v5_gn_6_50161 Lactuca sativa HOM05D002816 ORTHO05D005633 2.6e-14 81.3 52 67.3
MD11G1022500 Malus domestica HOM05D002816 ORTHO05D005633 2.6e-14 81.3 51 70.6
HanXRQChr07g0196931 Helianthus annuus HOM05D002816 ORTHO05D005633 3.4e-14 80.9 50 66.0
MD03G1020900 Malus domestica HOM05D002816 ORTHO05D005633 3.4e-14 80.9 51 66.7
Thecc.09G223700 Theobroma cacao HOM05D002816 ORTHO05D005633 3.4e-14 80.9 52 69.2
Solyc01g006600.3 Solanum lycopersicum HOM05D002816 ORTHO05D005633 4.5e-14 80.5 52 65.4
ATR0605G130 Amborella trichopoda HOM05D002816 ORTHO05D005633 7.6e-14 79.7 52 63.5
COL.COLO4_09898 Corchorus olitorius HOM05D002816 ORTHO05D005633 7.6e-14 79.7 52 67.3
CsaV3_4G023760 Cucumis sativus L. HOM05D002816 ORTHO05D005633 7.6e-14 79.7 52 67.3
Psat7g213680 Pisum sativum HOM05D002816 ORTHO05D005633 7.6e-14 79.7 52 67.3
Eucgr.J00812 Eucalyptus grandis HOM05D002816 ORTHO05D005633 1.0e-13 79.3 52 63.5
Lsat_1_v5_gn_6_50280 Lactuca sativa HOM05D002816 ORTHO05D005633 1.0e-13 79.3 50 68.0
TPR.G13661 Trifolium pratense HOM05D004419 ORTHO05D005633 1.0e-13 79.3 52 65.4
VMungo1127G0859 Vigna mungo HOM05D002816 ORTHO05D005633 1.0e-13 79.3 52 67.3
Potri.003G210600 Populus trichocarpa HOM05D002816 ORTHO05D005633 1.3e-13 79.0 51 68.6
Potri.T085701 Populus trichocarpa HOM05D002816 ORTHO05D005633 1.3e-13 79.0 51 68.6
arahy.Tifrunner.gnm1.ann1.D5VX0F Arachis hypogaea HOM05D002816 ORTHO05D005633 2.2e-13 78.2 52 63.5
arahy.Tifrunner.gnm1.ann1.S74NHW Arachis hypogaea HOM05D002816 ORTHO05D005633 2.2e-13 78.2 52 63.5
Phvul.011G056700 Phaseolus vulgaris HOM05D002816 ORTHO05D005633 2.2e-13 78.2 52 65.4
Prupe.6G018300 Prunus persica HOM05D002816 ORTHO05D005633 2.2e-13 78.2 52 65.4
Zm00001eb079870 Zea mays HOM05D002816 ORTHO05D005633 3.8e-13 77.4 52 63.5
Medtr4g066130 Medicago truncatula HOM05D002816 ORTHO05D005633 5.0e-13 77.0 52 65.4
Eucgr.J00810 Eucalyptus grandis HOM05D002816 ORTHO05D005633 6.5e-13 76.6 52 59.6
MELO3C014642.2 Cucumis melo HOM05D002816 ORTHO05D005633 1.1e-12 75.9 52 63.5
Potri.003G210701 Populus trichocarpa HOM05D002816 ORTHO05D005633 1.1e-12 75.9 51 66.7
Lalb_Chr03g0026201 Lupinus albus HOM05D002816 ORTHO05D005633 1.4e-12 75.5 52 61.5
CAN.G396.5 Capsicum annuum HOM05D002719 ORTHO05D002938 4.2e-12 73.9 50 62.0
CAN.G396.13 Capsicum annuum HOM05D002719 ORTHO05D002938 7.1e-12 73.2 50 60.0
SEGI_13421 Sequoiadendron giganteum HOM05D002816 ORTHO05D005633 6.1e-11 70.1 51 60.8
Actinidia06321 Actinidia chinensis HOM05D002816 ORTHO05D005633 1.3e-10 68.9 40 72.5
AagrBONN_evm.TU.Sc2ySwM_344.2597 Anthoceros agrestis HOM05D002816 ORTHO05D005633 3.9e-10 67.4 50 60.0
SEGI_08242 Sequoiadendron giganteum HOM05D002816 ORTHO05D005633 6.7e-10 66.6 51 56.9
Lj4g0013504 Lotus japonicus HOM05D002816 ORTHO05D005633 1.5e-09 65.5 36 72.2
Mapoly0023s0010 Marchantia polymorpha HOM05D002816 ORTHO05D005633 2.2e-08 61.6 50 54.0
AagrBONN_evm.TU.Sc2ySwM_344.2583 Anthoceros agrestis HOM05D002816 ORTHO05D005633 4.8e-08 60.5 52 50.0
SMO166G0063 Selaginella moellendorffii HOM05D002816 ORTHO05D005633 9.0e-07 56.2 52 48.1
SMO115G0335 Selaginella moellendorffii HOM05D002816 ORTHO05D005633 3.4e-06 54.3 52 46.2


User provided reference genes

Program Settings