Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.3e-179 632.9 304 100.0
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.0e-176 623.2 304 98.7
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.4e-165 586.3 304 93.1
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 4.9e-155 551.2 304 85.5
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 2.5e-154 548.9 303 84.8
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 2.2e-150 535.8 304 81.6
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.1e-149 533.5 309 86.7
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 9.0e-149 530.4 303 81.2
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 2.9e-147 525.4 303 80.9
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 5.0e-147 524.6 303 79.2
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 5.0e-147 524.6 304 79.9
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 5.0e-147 524.6 304 80.3
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 8.5e-147 523.9 304 80.3
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 1.1e-146 523.5 303 80.5
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 1.1e-146 523.5 304 79.3
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.9e-146 522.7 303 82.5
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 2.5e-146 522.3 303 80.2
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 2.5e-146 522.3 303 80.9
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 3.2e-146 521.9 304 80.3
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 3.2e-146 521.9 304 80.3
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 5.5e-146 521.2 303 80.2
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 1.6e-145 519.6 303 80.2
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 4.6e-145 518.1 303 79.5
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 7.9e-145 517.3 302 78.8
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 7.9e-145 517.3 304 78.6
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 1.4e-144 516.5 304 78.9
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 1.4e-144 516.5 280 85.7
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 2.3e-144 515.8 302 79.5
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 5.1e-144 514.6 303 78.5
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 3.3e-143 511.9 303 76.6
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 4.3e-143 511.5 301 80.1
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 1.3e-142 510.0 303 78.5
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 1.7e-142 509.6 332 72.9
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 1.7e-142 509.6 303 78.9
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 4.8e-142 508.1 303 77.6
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 1.1e-141 506.9 303 79.5
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 1.1e-141 506.9 303 77.6
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 1.4e-141 506.5 304 77.3
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.4e-141 506.5 304 77.3
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 1.4e-141 506.5 303 77.2
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 1.8e-141 506.1 305 77.4
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.4e-141 505.8 303 79.2
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 2.4e-141 505.8 303 79.2
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 2.0e-140 502.7 299 78.9
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 2.0e-140 502.7 303 77.6
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 2.6e-140 502.3 304 77.0
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 3.4e-140 501.9 299 79.3
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 4.5e-140 501.5 275 86.5
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 1.0e-139 500.4 299 77.3
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 2.2e-139 499.2 305 78.0
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 2.2e-139 499.2 303 77.2
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 8.5e-139 497.3 303 78.2
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 8.5e-139 497.3 303 75.2
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.4e-138 496.5 328 72.3
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 1.9e-138 496.1 303 74.6
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 7.2e-138 494.2 300 75.3
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 9.4e-138 493.8 303 76.9
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 9.4e-138 493.8 303 76.6
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 1.6e-137 493.0 303 74.9
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 2.1e-137 492.7 305 77.4
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 3.6e-137 491.9 304 77.0
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 7.9e-137 490.7 303 76.9
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 1.0e-136 490.3 302 75.5
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 6.7e-136 487.6 303 77.6
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 8.8e-136 487.3 302 73.8
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 1.5e-135 486.5 301 77.4
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 2.6e-135 485.7 304 76.0
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 4.4e-135 485.0 303 72.9
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 1.3e-134 483.4 302 74.5
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.7e-134 483.0 304 76.0
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 4.8e-134 481.5 304 74.0
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 2.4e-133 479.2 304 75.0
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 2.4e-133 479.2 302 73.5
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 4.1e-133 478.4 303 71.3
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 4.1e-133 478.4 304 74.7
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 7.0e-133 477.6 295 75.6
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 7.0e-133 477.6 365 65.2
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.5e-132 476.5 304 74.7
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 1.5e-132 476.5 302 72.8
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 2.0e-132 476.1 303 73.3
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 2.0e-132 476.1 304 74.7
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 4.5e-132 474.9 305 73.8
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 1.0e-131 473.8 304 71.1
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 1.3e-131 473.4 304 73.7
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 1.5e-130 469.9 302 70.9
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 2.5e-130 469.2 304 71.1
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 4.2e-130 468.4 304 72.4
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 4.2e-130 468.4 302 70.9
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 4.2e-130 468.4 304 72.7
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 5.5e-130 468.0 303 70.3
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 7.2e-130 467.6 303 70.0
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 1.2e-129 466.8 303 70.0
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 4.7e-129 464.9 303 69.3
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 1.0e-128 463.8 303 69.6
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 2.3e-128 462.6 303 69.3
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 2.3e-128 462.6 303 72.3
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 6.7e-128 461.1 303 71.3
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 1.1e-127 460.3 303 69.0
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 1.5e-127 459.9 303 71.6
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 1.5e-127 459.9 303 69.0
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 1.5e-127 459.9 302 70.5
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 2.0e-127 459.5 303 71.0
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 5.7e-127 458.0 320 68.8
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 1.7e-126 456.4 302 68.9
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 4.8e-126 454.9 263 80.6
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 6.3e-126 454.5 277 75.8
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 4.1e-125 451.8 313 69.0
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 5.0e-123 444.9 304 72.7
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 1.9e-122 443.0 289 71.3
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.9e-122 443.0 302 67.5
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 2.6e-119 432.6 311 66.9
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.8e-117 426.4 302 66.6
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 4.1e-117 425.2 277 72.9
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 1.6e-116 423.3 303 66.0
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 3.5e-116 422.2 246 80.5
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 1.8e-109 399.8 250 72.0
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 3.1e-109 399.1 221 85.1
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 2.7e-108 396.0 449 46.3
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 4.2e-106 388.7 304 62.8
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 5.2e-104 381.7 325 57.8
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 1.9e-98 363.2 328 54.0
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 2.3e-96 356.3 295 59.0
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 1.2e-95 354.0 210 77.1
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 1.9e-93 346.7 193 84.5
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 5.4e-93 345.1 194 87.6
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 9.2e-93 344.4 358 49.2
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 2.7e-92 342.8 205 78.0
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 3.0e-91 339.3 332 55.1
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 1.1e-90 337.4 333 55.3
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 3.3e-90 335.9 298 52.7
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 7.3e-90 334.7 193 78.8
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 4.7e-89 332.0 277 61.4
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 5.2e-88 328.6 285 58.6
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 1.1e-85 320.9 243 64.6
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.4e-85 320.5 194 83.0
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 2.4e-85 319.7 170 89.4
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.2e-84 317.4 304 56.2
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 1.2e-84 317.4 194 73.7
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 1.6e-84 317.0 293 53.6
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 4.6e-84 315.5 302 53.3
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 1.2e-81 307.4 193 71.0
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 4.9e-78 295.4 280 50.0
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 1.9e-77 293.5 192 68.8
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 8.1e-73 278.1 179 74.9
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 1.4e-72 277.3 303 51.5
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 1.5e-66 257.3 147 81.6
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 1.2e-60 237.7 134 82.1
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 4.0e-56 222.6 147 71.4
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 3.7e-49 199.5 127 71.7
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 7.1e-45 185.3 116 73.3
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 1.8e-43 180.6 210 52.9
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 2.3e-43 180.3 346 31.8
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 3.9e-43 179.5 254 44.1
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.4e-40 171.0 307 38.8
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 3.1e-40 169.9 223 38.6
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 6.9e-40 168.7 156 53.2
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 3.8e-38 162.9 302 29.5
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 2.1e-36 157.1 89 78.7
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 3.5e-36 156.4 90 81.1
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 5.1e-27 125.9 219 32.9
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 3.3e-18 96.7 69 60.9
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 7.4e-18 95.5 69 60.9
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 1.7e-17 94.4 68 63.2
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 7.0e-16 89.0 67 61.2
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 3.6e-12 76.6 49 73.5
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.4e-08 64.7 40 67.5
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 7.0e-08 62.4 55 50.9
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 5.9e-07 59.3 43 58.1


User provided reference genes

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