Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003674 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 7.9e-48 193.4 92 100.0
CSS0001028 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 3.9e-39 164.5 94 87.2
CSS0018128 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 1.4e-36 156.0 76 96.1
CSS0040997 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 7.0e-36 153.7 76 94.7
CSS0037197 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 1.0e-31 139.8 126 61.9
CSS0038370 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 1.0e-31 139.8 126 61.9
Atru.chr1.77 Acer truncatum HOM05D004000 ORTHO05D004629 9.7e-30 133.3 123 60.2
Actinidia12763 Actinidia chinensis HOM05D004000 ORTHO05D004629 9.7e-30 133.3 103 66.0
Actinidia24665 Actinidia chinensis HOM05D004000 ORTHO05D004629 2.2e-29 132.1 123 59.3
QL04p091152 Quercus lobata HOM05D004000 ORTHO05D004629 2.2e-29 132.1 123 59.3
QL04p092275 Quercus lobata HOM05D004000 ORTHO05D004629 2.2e-29 132.1 123 59.3
vmacro09768 Vaccinium macrocarpon HOM05D004000 ORTHO05D004629 2.2e-29 132.1 124 59.7
CSS0006140 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 2.8e-29 131.7 123 59.3
unitig_744.g24504 Utricularia gibba HOM05D004000 ORTHO05D004629 2.8e-29 131.7 101 65.3
Actinidia37130 Actinidia chinensis HOM05D004000 ORTHO05D004629 3.7e-29 131.3 124 58.9
Nn8g41219 Nelumbo nucifera HOM05D004000 ORTHO05D004629 3.7e-29 131.3 101 65.3
Potri.008G083800 Populus trichocarpa HOM05D004000 ORTHO05D004629 3.7e-29 131.3 123 58.5
Oeu044963.4 Olea europaea HOM05D004000 ORTHO05D004629 4.8e-29 131.0 123 58.5
TWI38G0870 Tripterygium wilfordii HOM05D004000 ORTHO05D004629 4.8e-29 131.0 124 58.1
TAR627G0690 Trochodendron aralioides HOM05D004000 ORTHO05D004629 4.8e-29 131.0 123 58.5
Aqoxy2G00201 Aquilegia oxysepala HOM05D004000 ORTHO05D004629 6.3e-29 130.6 123 57.7
Cc05_g16490 Coffea canephora HOM05D004000 ORTHO05D004629 6.3e-29 130.6 101 65.3
HanXRQChr04g0125331 Helianthus annuus HOM05D004000 ORTHO05D004629 6.3e-29 130.6 101 63.4
vmacro11690 Vaccinium macrocarpon HOM05D004000 ORTHO05D004629 6.3e-29 130.6 123 59.3
CDE05G1666 Ceratophyllum demersum HOM05D004000 ORTHO05D004629 8.2e-29 130.2 102 63.7
Dinv19580 Davidia involucrata HOM05D004000 ORTHO05D004629 8.2e-29 130.2 123 57.7
Dinv42470 Davidia involucrata HOM05D004000 ORTHO05D004629 8.2e-29 130.2 123 57.7
MSTRG.14568 Avicennia marina HOM05D004000 ORTHO05D004629 1.1e-28 129.8 123 59.3
Ciclev10005712m.g Citrus clementina HOM05D004000 ORTHO05D004629 1.1e-28 129.8 123 58.5
Rhsim06G0243100 Rhododendron simsii HOM05D004000 ORTHO05D004629 1.4e-28 129.4 123 58.5
Sc10g0007870 Simmondsia chinensis HOM05D004000 ORTHO05D004629 1.4e-28 129.4 123 56.9
CDE05G0982 Ceratophyllum demersum HOM05D004000 ORTHO05D004629 1.8e-28 129.0 102 63.7
Eucgr.F01477 Eucalyptus grandis HOM05D004000 ORTHO05D004629 1.8e-28 129.0 123 58.5
Manes.17G000700 Manihot esculenta HOM05D004000 ORTHO05D004629 1.8e-28 129.0 123 57.7
Nn7g36133 Nelumbo nucifera HOM05D004000 ORTHO05D004629 1.8e-28 129.0 123 57.7
Nitab4.5_0000029g0230 Nicotiana tabacum HOM05D004000 ORTHO05D004629 1.8e-28 129.0 123 58.5
Nitab4.5_0006109g0060 Nicotiana tabacum HOM05D004000 ORTHO05D004629 1.8e-28 129.0 123 58.5
Sed0027108 Sechium edule HOM05D004000 ORTHO05D004629 1.8e-28 129.0 110 62.7
MSTRG.13084 Avicennia marina HOM05D004000 ORTHO05D004629 2.4e-28 128.6 123 56.9
PSO339G1394 Papaver somniferum HOM05D004000 ORTHO05D004629 2.4e-28 128.6 101 63.4
PSO384G1790 Papaver somniferum HOM05D004000 ORTHO05D004629 2.4e-28 128.6 101 63.4
TWI59G1464 Tripterygium wilfordii HOM05D004000 ORTHO05D004629 2.4e-28 128.6 123 56.9
CiPaw.11G059500 Carya illinoinensis HOM05D004000 ORTHO05D004629 3.1e-28 128.3 123 57.7
ECA236G3922 Erigeron canadensis HOM05D004000 ORTHO05D004629 3.1e-28 128.3 101 63.4
Lsat_1_v5_gn_7_110801 Lactuca sativa HOM05D004000 ORTHO05D004629 3.1e-28 128.3 103 62.1
DCAR_016849 Daucus carota HOM05D004000 ORTHO05D004629 5.3e-28 127.5 123 56.9
SGA_v2.0_scaffold49G18199 Striga asiatica HOM05D004000 ORTHO05D004629 5.3e-28 127.5 123 56.9
Migut.H01660 Erythranthe guttata HOM05D004000 ORTHO05D004629 7.0e-28 127.1 100 64.0
Phvul.005G049350 Phaseolus vulgaris HOM05D004000 ORTHO05D004629 7.0e-28 127.1 123 57.7
Prupe.4G131300 Prunus persica HOM05D004000 ORTHO05D004629 7.0e-28 127.1 101 63.4
VMungo1080G1629 Vigna mungo HOM05D004000 ORTHO05D004629 7.0e-28 127.1 123 57.7
MELO3C012597.2 Cucumis melo HOM05D004000 ORTHO05D004629 9.1e-28 126.7 124 57.3
CsaV3_7G022990 Cucumis sativus L. HOM05D004000 ORTHO05D004629 9.1e-28 126.7 124 57.3
Ca_03197_v3 Cicer arietinum L. HOM05D004000 ORTHO05D004629 1.2e-27 126.3 101 63.4
Duzib213G0764 Durio zibethinus HOM05D004000 ORTHO05D004629 1.2e-27 126.3 123 58.5
Glyma.15G262200 Glycine max HOM05D004000 ORTHO05D004629 1.2e-27 126.3 101 63.4
Psat0s1441g0160 Pisum sativum HOM05D004000 ORTHO05D004629 1.2e-27 126.3 101 63.4
Solyc07g066650.4 Solanum lycopersicum HOM05D004000 ORTHO05D004629 1.2e-27 126.3 123 56.9
Sopen07g034800 Solanum pennellii HOM05D004000 ORTHO05D004629 1.2e-27 126.3 123 56.9
SGA_v2.0_scaffold239G44016 Striga asiatica HOM05D004000 ORTHO05D004629 1.2e-27 126.3 123 58.5
HPP92_020395 Vanilla planifolia HOM05D004000 ORTHO05D004629 1.2e-27 126.3 123 56.1
MD05G1234900 Malus domestica HOM05D004000 ORTHO05D004629 1.6e-27 125.9 123 56.1
Peaxi162Scf00452g00229 Petunia axillaris HOM05D004000 ORTHO05D004629 1.6e-27 125.9 101 63.4
GSVIVG01036747001 Vitis vinifera HOM05D004000 ORTHO05D004629 1.6e-27 125.9 101 63.4
Cpa.g.sc32.66 Carica papaya HOM05D004000 ORTHO05D004629 2.0e-27 125.6 123 56.9
Glyma.08G164900 Glycine max HOM05D004000 ORTHO05D004629 2.0e-27 125.6 123 56.9
Sed0027383 Sechium edule HOM05D004000 ORTHO05D004629 2.0e-27 125.6 123 56.9
ClCG09G022790 Citrullus lanatus HOM05D004000 ORTHO05D004629 2.7e-27 125.2 101 63.4
Lalb_Chr01g0015521 Lupinus albus HOM05D004000 ORTHO05D004629 2.7e-27 125.2 123 56.1
THA.LOC104810272 Tarenaya hassleriana HOM05D004000 ORTHO05D004629 2.7e-27 125.2 123 55.3
CANSAT56G1070 Cannabis sativa HOM05D004000 ORTHO05D004629 3.5e-27 124.8 123 56.1
Oeu034052.1 Olea europaea HOM05D004000 ORTHO05D004629 3.5e-27 124.8 100 63.0
TPR.G27463 Trifolium pratense HOM05D004000 ORTHO05D004629 4.5e-27 124.4 101 62.4
Gohir.D08G252100 Gossypium hirsutum HOM05D004000 ORTHO05D004629 5.9e-27 124.0 123 55.3
RcHm_v2.0_Chr5g0024051 Rosa chinensis HOM05D004000 ORTHO05D004629 5.9e-27 124.0 123 53.7
Thecc.07G186500 Theobroma cacao HOM05D004000 ORTHO05D004629 5.9e-27 124.0 123 56.9
unitig_61.g26121 Utricularia gibba HOM05D004000 ORTHO05D004629 5.9e-27 124.0 123 55.3
arahy.Tifrunner.gnm1.ann1.UQZ7YG Arachis hypogaea HOM05D004000 ORTHO05D004629 7.7e-27 123.6 123 56.1
FAN25G1212 Fragaria x ananassa HOM05D004000 ORTHO05D004629 1.3e-26 122.9 123 52.8
Gohir.A08G231700 Gossypium hirsutum HOM05D004000 ORTHO05D004629 1.3e-26 122.9 100 61.0
Medtr2g064415 Medicago truncatula HOM05D004000 ORTHO05D004629 1.3e-26 122.9 101 61.4
TAR629G3216 Trochodendron aralioides HOM05D004000 ORTHO05D004629 1.3e-26 122.9 123 56.1
ECA240G0236 Erigeron canadensis HOM05D004000 ORTHO05D004629 1.7e-26 122.5 101 60.4
FAN11G2975 Fragaria x ananassa HOM05D004000 ORTHO05D004629 1.7e-26 122.5 123 52.0
FAN16G0250 Fragaria x ananassa HOM05D004000 ORTHO05D004629 1.7e-26 122.5 123 52.0
FAN21G3980 Fragaria x ananassa HOM05D004000 ORTHO05D004629 1.7e-26 122.5 123 52.0
Gorai.004G268800 Gossypium raimondii HOM05D004000 ORTHO05D004629 1.7e-26 122.5 123 54.5
Lalb_Chr20g0108471 Lupinus albus HOM05D004000 ORTHO05D004629 2.2e-26 122.1 123 54.5
Duzib187G0240 Durio zibethinus HOM05D004000 ORTHO05D004629 2.9e-26 121.7 123 56.9
THA.LOC104816986 Tarenaya hassleriana HOM05D004000 ORTHO05D004629 2.9e-26 121.7 123 52.8
Os06g0233400 Oryza sativa ssp. japonica HOM05D004000 ORTHO05D004629 3.8e-26 121.3 124 53.2
HanXRQChr13g0408851 Helianthus annuus HOM05D004000 ORTHO05D004629 5.0e-26 120.9 110 58.2
Lj3g0014191 Lotus japonicus HOM05D004000 ORTHO05D004629 5.0e-26 120.9 123 56.1
Ah.01g015680 Amaranthus hybridus HOM05D004000 ORTHO05D004629 6.5e-26 120.6 102 58.8
EL10Ac2g03287 Beta vulgaris HOM05D004000 ORTHO05D004629 6.5e-26 120.6 102 59.8
Duzib268G1547 Durio zibethinus HOM05D004000 ORTHO05D004629 8.5e-26 120.2 123 55.3
CARHR087290 Cardamine hirsuta HOM05D004000 ORTHO05D004629 1.5e-25 119.4 110 58.2
MD10G1211100 Malus domestica HOM05D004000 ORTHO05D004629 2.5e-25 118.6 122 52.5
Zm00001eb194650 Zea mays HOM05D004000 ORTHO05D004629 3.2e-25 118.2 124 51.6
BcaB06g25514 Brassica carinata HOM05D004000 ORTHO05D004629 4.2e-25 117.9 123 52.0
Thhalv10021347m.g Eutrema salsugineum HOM05D004000 ORTHO05D004629 4.2e-25 117.9 110 56.4
Mapoly0065s0055 Marchantia polymorpha HOM05D004000 ORTHO05D004629 4.2e-25 117.9 101 57.4
Pp3c10_17770 Physcomitrium patens HOM05D004000 ORTHO05D004629 4.2e-25 117.9 101 58.4
Sp3g10920 Schrenkiella parvula HOM05D004000 ORTHO05D004629 4.2e-25 117.9 110 56.4
BcaC05g29239 Brassica carinata HOM05D004000 ORTHO05D004629 5.5e-25 117.5 123 52.0
A05p36700 Brassica napus HOM05D004000 ORTHO05D004629 5.5e-25 117.5 123 52.0
C05p55150 Brassica napus HOM05D004000 ORTHO05D004629 5.5e-25 117.5 123 52.0
BolC5t34183H Brassica oleracea HOM05D004000 ORTHO05D004629 5.5e-25 117.5 123 52.0
BraA05t22474Z Brassica rapa HOM05D004000 ORTHO05D004629 5.5e-25 117.5 123 52.0
arahy.Tifrunner.gnm1.ann1.U2QCB7 Arachis hypogaea HOM05D004000 ORTHO05D004629 7.2e-25 117.1 129 53.5
Zm00001eb279840 Zea mays HOM05D004000 ORTHO05D004629 7.2e-25 117.1 123 52.8
Lj2C12T8 Lonicera japonica HOM05D004000 ORTHO05D004629 9.4e-25 116.7 93 64.5
A01p40750 Brassica napus HOM05D004000 ORTHO05D004629 1.2e-24 116.3 123 52.0
A03p37780 Brassica napus HOM05D001323 ORTHO05D001223 1.2e-24 116.3 110 54.5
BraA01t04109Z Brassica rapa HOM05D004000 ORTHO05D004629 1.2e-24 116.3 123 52.0
AT3G12760 Arabidopsis thaliana HOM05D004000 ORTHO05D004629 1.6e-24 115.9 123 52.0
BcaC01g04031 Brassica carinata HOM05D001323 ORTHO05D001223 1.6e-24 115.9 110 55.5
C03p45850 Brassica napus HOM05D001323 ORTHO05D001223 1.6e-24 115.9 100 56.0
BolC3t16860H Brassica oleracea HOM05D001323 ORTHO05D001223 2.1e-24 115.5 110 54.5
BraA03t12933Z Brassica rapa HOM05D001323 ORTHO05D001223 2.1e-24 115.5 110 54.5
SMO364G0004 Selaginella moellendorffii HOM05D004000 ORTHO05D004629 2.7e-24 115.2 91 61.5
Aa31LG8G60 Aethionema arabicum HOM05D004000 ORTHO05D004629 3.6e-24 114.8 133 48.9
BcaB04g18717 Brassica carinata HOM05D001323 ORTHO05D001223 3.6e-24 114.8 110 54.5
BcaC09g48261 Brassica carinata HOM05D004000 ORTHO05D004629 3.6e-24 114.8 123 51.2
C01p52380 Brassica napus HOM05D004000 ORTHO05D004629 3.6e-24 114.8 100 57.0
Carub.0003s1212 Capsella rubella HOM05D004000 ORTHO05D004629 3.6e-24 114.8 123 53.7
SalBow1G7638 Salvia bowleyana HOM05D004000 ORTHO05D004629 3.6e-24 114.8 146 48.6
AagrBONN_evm.TU.Sc2ySwM_117.2611 Anthoceros agrestis HOM05D004000 ORTHO05D004629 4.7e-24 114.4 101 56.4
AL3G24440 Arabidopsis lyrata HOM05D004000 ORTHO05D004629 4.7e-24 114.4 123 52.0
Peaxi162Scf00006g01617 Petunia axillaris HOM05D004000 ORTHO05D004629 8.0e-24 113.6 101 56.4
Pp3c12_24690 Physcomitrium patens HOM05D004000 ORTHO05D004629 8.0e-24 113.6 101 55.4
PGR004G2637 Punica granatum HOM05D004000 ORTHO05D004629 8.0e-24 113.6 121 53.7
BcaB04g21038 Brassica carinata HOM05D004000 ORTHO05D004629 1.0e-23 113.2 110 54.5
Nitab4.5_0000388g0080 Nicotiana tabacum HOM05D004000 ORTHO05D004629 1.4e-23 112.8 101 55.4
BolC1t05181H Brassica oleracea HOM05D004000 ORTHO05D004629 1.8e-23 112.5 112 53.6
Nitab4.5_0002597g0020 Nicotiana tabacum HOM05D004000 ORTHO05D004629 1.8e-23 112.5 101 54.5
Pp3c3_33500 Physcomitrium patens HOM05D004000 ORTHO05D004629 2.3e-23 112.1 101 59.4
CBR_g22391 Chara braunii HOM05D004000 ORTHO05D004629 5.2e-23 110.9 102 53.9
Aa31LG10G40 Aethionema arabicum HOM05D004000 ORTHO05D004629 1.2e-22 109.8 123 52.8
ATR0605G256 Amborella trichopoda HOM05D004000 ORTHO05D004629 1.3e-21 106.3 89 60.7
Gorai.009G353900 Gossypium raimondii HOM05D004000 ORTHO05D004629 3.7e-21 104.8 123 48.0
RcHm_v2.0_Chr2g0106621 Rosa chinensis HOM05D004000 ORTHO05D004629 6.3e-21 104.0 103 51.5
Sopen12g008120 Solanum pennellii HOM05D004000 ORTHO05D004629 1.8e-20 102.4 101 49.5
PGSC0003DMG400009664 Solanum tuberosum HOM05D004000 ORTHO05D004629 2.4e-20 102.1 101 48.5
Hund20115 Selenicereus undatus HOM05D004000 ORTHO05D004629 4.1e-20 101.3 51 88.2
Solyc12g017310.3 Solanum lycopersicum HOM05D004000 ORTHO05D004629 4.1e-20 101.3 101 48.5
FAN19G2643 Fragaria x ananassa HOM05D004000 ORTHO05D004629 7.0e-20 100.5 103 51.5
FAN23G0482 Fragaria x ananassa HOM05D000049 ORTHO05D004629 7.0e-20 100.5 103 51.5
FAN26G0293 Fragaria x ananassa HOM05D004000 ORTHO05D004629 7.0e-20 100.5 103 51.5
FvH4_1g16700 Fragaria vesca HOM05D000049 ORTHO05D004629 5.9e-19 97.4 103 50.5
CAN.G321.32 Capsicum annuum HOM05D004000 ORTHO05D004629 1.0e-18 96.7 101 46.5
FAN28G2261 Fragaria x ananassa HOM05D004000 ORTHO05D004629 1.7e-18 95.9 103 49.5
BcaC01g04032 Brassica carinata HOM05D004000 ORTHO05D004629 3.8e-18 94.7 83 56.6
Cre12.g487400 Chlamydomonas reinhardtii HOM05D004000 ORTHO05D004629 2.0e-14 82.4 102 42.2
SMO198G0075 Selaginella moellendorffii HOM05D004000 ORTHO05D004629 5.7e-14 80.9 50 68.0
FAN28G0737 Fragaria x ananassa HOM05D004000 ORTHO05D004629 1.8e-12 75.9 93 48.4
Cre01.g014850 Chlamydomonas reinhardtii HOM05D004000 ORTHO05D004629 2.7e-11 72.0 106 35.8
Gohir.D05G330150 Gossypium hirsutum HOM05D004000 ORTHO05D004629 1.7e-10 69.3 101 42.6
SEGI_20471 Sequoiadendron giganteum HOM05D004000 ORTHO05D004629 1.7e-10 69.3 35 88.6
AUR62037658 Chenopodium quinoa HOM05D004000 ORTHO05D004629 2.3e-10 68.9 35 82.9
AUR62040875 Chenopodium quinoa HOM05D004000 ORTHO05D004629 2.3e-10 68.9 35 82.9
Rhsim04G0003200 Rhododendron simsii HOM05D004000 ORTHO05D004629 8.6e-10 67.0 98 40.8
PRCOL_00005347 Prasinoderma coloniale HOM05D004000 ORTHO05D004629 6.1e-08 60.8 102 33.3
Actinidia25397 Actinidia chinensis HOM05D004000 ORTHO05D004629 8.0e-08 60.5 89 43.8
FvH4_3g14590 Fragaria vesca HOM05D004000 ORTHO05D004629 4.0e-07 58.2 89 38.2
CAN.G106.17 Capsicum annuum HOM05D004000 ORTHO05D000001 4.4e-06 54.7 39 59.0


User provided reference genes

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