Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 0.0e+00 2223.4 1133 100.0
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 1.0e-221 774.6 1154 44.5
Rhsim08G0224000 Rhododendron simsii HOM05D004021 ORTHO05D003767 1.2e-214 751.1 1180 43.6
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 3.7e-211 739.6 1258 42.1
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 3.8e-123 447.2 749 41.8
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 6.4e-115 419.9 1495 29.3
Rhsim08G0224300 Rhododendron simsii HOM05D004021 ORTHO05D003767 4.2e-66 257.7 438 41.1
Dinv30475 Davidia involucrata HOM05D024977 ORTHO05D003767 2.8e-62 245.0 422 41.2
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 1.5e-55 222.6 1163 27.1
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 1.1e-50 206.5 1167 25.7
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 1.1e-50 206.5 1384 23.8
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 1.5e-50 206.1 1349 24.7
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 1.2e-49 203.0 1320 24.4
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 1.3e-46 193.0 1179 24.8
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 4.8e-46 191.0 1235 25.3
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 8.3e-46 190.3 1316 25.0
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 3.1e-45 188.3 1116 25.0
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 1.5e-42 179.5 1345 24.8
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.5e-42 178.7 1320 23.8
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 5.5e-42 177.6 1357 23.5
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 2.1e-41 175.6 1325 23.2
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.8e-41 175.3 1330 23.8
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.6e-41 174.9 1319 23.7
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 4.0e-40 171.4 1330 23.8
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 1.7e-38 166.0 1300 23.2
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 4.9e-38 164.5 1318 22.2
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 4.9e-38 164.5 1320 24.4
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 1.1e-37 163.3 1321 23.7
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 7.8e-36 157.1 1136 23.3
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 2.9e-35 155.2 1260 22.8
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.5e-34 152.9 562 29.2
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 2.3e-32 145.6 1345 22.8
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 1.5e-31 142.9 1393 23.3
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 2.0e-31 142.5 1107 24.7
Dinv10761 Davidia involucrata HOM05D024977 ORTHO05D003767 3.4e-31 141.7 218 43.1
Dinv30643 Davidia involucrata HOM05D024977 ORTHO05D003767 3.4e-31 141.7 218 43.1
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 9.8e-31 140.2 1312 22.9
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 9.8e-31 140.2 1100 23.9
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 9.8e-31 140.2 1310 22.4
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 8.3e-30 137.1 1091 24.1
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 1.4e-29 136.3 1302 22.4
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 2.0e-28 132.5 1300 22.2
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 4.6e-28 131.3 1114 23.2
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 1.0e-27 130.2 1080 23.1
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 1.1e-26 126.7 1297 22.7
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.1e-26 126.7 323 31.0
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 2.5e-26 125.6 1030 22.7
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 3.3e-26 125.2 1286 21.9
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.3e-26 125.2 1090 24.0
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 5.6e-26 124.4 1040 23.4
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 5.6e-26 124.4 1258 23.7
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.4e-24 119.8 1082 23.6
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 6.8e-24 117.5 1278 23.4
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 2.6e-23 115.5 1386 20.8
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 2.9e-22 112.1 1254 22.4
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 1.4e-21 109.8 1225 22.0
TAR626G1566 Trochodendron aralioides HOM05D004021 ORTHO05D003767 3.5e-20 105.1 392 27.8
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 7.8e-20 104.0 1336 22.8
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 7.8e-20 104.0 1090 23.4
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 3.9e-19 101.7 1247 21.6
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 1.5e-18 99.8 1142 22.9
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 2.5e-18 99.0 1255 21.4
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 2.5e-18 99.0 1122 22.9
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 5.6e-18 97.8 1049 22.3
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 7.3e-18 97.4 1084 23.0
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 9.5e-18 97.1 488 28.1
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 9.5e-18 97.1 1068 22.5
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 1.8e-16 92.8 861 23.1
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 5.2e-16 91.3 1099 22.7
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 1.2e-15 90.1 100 43.0
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 1.5e-15 89.7 1079 22.7
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 2.6e-15 89.0 1082 22.6
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.6e-15 89.0 1231 21.9
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 3.4e-15 88.6 1261 22.5
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 4.4e-15 88.2 1254 21.9
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 2.2e-14 85.9 1236 22.2
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 2.2e-14 85.9 1257 21.8
PSO782G1327 Papaver somniferum HOM05D004021 ORTHO05D003767 2.2e-14 85.9 1120 21.7
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 2.9e-14 85.5 1217 22.8
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 2.9e-14 85.5 108 45.4
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 2.9e-14 85.5 1250 22.0
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 4.9e-14 84.7 1296 21.8
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 6.4e-14 84.3 1276 22.0
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 2.4e-13 82.4 1299 21.6
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 1.6e-12 79.7 339 26.0
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 1.6e-12 79.7 1220 20.9
CDE05G1167 Ceratophyllum demersum HOM05D004021 ORTHO05D003767 3.5e-12 78.6 88 39.8
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 6.0e-12 77.8 1250 22.6
ATR0315G010 Amborella trichopoda HOM05D004021 ORTHO05D003767 1.0e-11 77.0 174 27.0
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 1.0e-11 77.0 81 45.7
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 1.7e-11 76.3 73 43.8
AUR62041723 Chenopodium quinoa HOM05D012164 ORTHO05D003767 2.3e-11 75.9 105 38.1
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 2.3e-11 75.9 90 40.0
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 3.0e-11 75.5 1096 21.5
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 3.9e-11 75.1 1246 20.9
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 3.9e-11 75.1 1276 20.7
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 6.6e-11 74.3 345 26.7
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 6.6e-11 74.3 1010 20.9
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 8.6e-11 73.9 60 55.0
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 1.1e-10 73.6 1165 21.7
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 1.5e-10 73.2 136 33.8
Ah.10g035100 Amaranthus hybridus HOM05D012164 ORTHO05D003767 1.9e-10 72.8 128 37.5
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 7.3e-10 70.9 319 25.7
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 9.5e-10 70.5 59 45.8
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 1.2e-09 70.1 1112 22.4
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 1.2e-09 70.1 137 32.1
Ah.16g105370 Amaranthus hybridus HOM05D012164 ORTHO05D003767 1.6e-09 69.7 99 41.4
Rhsim08G0033500 Rhododendron simsii HOM05D000565 ORTHO05D002009 1.6e-09 69.7 54 66.7
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 2.1e-09 69.3 1245 22.2
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 2.1e-09 69.3 73 41.1
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.8e-09 68.9 434 23.5
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 6.2e-09 67.8 133 36.8
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 6.2e-09 67.8 133 36.8
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 6.2e-09 67.8 133 36.8
Dinv02074 Davidia involucrata HOM05D024977 ORTHO05D003767 6.2e-09 67.8 84 47.6
Dinv08006 Davidia involucrata HOM05D024977 ORTHO05D003767 6.2e-09 67.8 84 47.6
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 6.2e-09 67.8 132 34.8
HPP92_026866 Vanilla planifolia HOM05D004021 ORTHO05D003767 6.2e-09 67.8 62 45.2
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 1.1e-08 67.0 183 30.1
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 1.1e-08 67.0 83 41.0
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 1.1e-08 67.0 86 47.7
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 1.4e-08 66.6 133 35.3
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 1.4e-08 66.6 133 35.3
SEGI_07029 Sequoiadendron giganteum HOM05D004021 ORTHO05D003767 1.8e-08 66.2 67 38.8
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 2.4e-08 65.9 73 43.8
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 2.4e-08 65.9 183 29.5
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 2.4e-08 65.9 73 43.8
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 3.1e-08 65.5 383 25.1
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 3.1e-08 65.5 1219 22.1
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 3.1e-08 65.5 252 25.0
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 4.0e-08 65.1 73 42.5
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 5.2e-08 64.7 67 47.8
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 6.8e-08 64.3 1243 21.6
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 6.8e-08 64.3 1222 20.7
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 8.9e-08 63.9 73 43.8
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 8.9e-08 63.9 73 43.8
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 8.9e-08 63.9 82 36.6
Lalb_Chr24g0396931 Lupinus albus HOM05D004021 ORTHO05D003767 8.9e-08 63.9 277 24.5
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 2.0e-07 62.8 69 46.4
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 2.0e-07 62.8 67 40.3
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 2.6e-07 62.4 218 27.1
FAN02G4319 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.6e-07 62.4 377 25.7
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 2.6e-07 62.4 1150 21.0
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 3.4e-07 62.0 69 37.7
FAN09G3084 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.4e-07 62.0 377 25.7
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 4.4e-07 61.6 230 26.5
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 5.8e-07 61.2 235 26.4
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 5.8e-07 61.2 1250 21.8
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 1.3e-06 60.1 234 26.9
Nitab4.5_0000500g0270 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.7e-06 59.7 469 24.3
FAN20G1338 Fragaria x ananassa HOM05D004021 ORTHO05D003767 2.9e-06 58.9 377 25.5
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 3.8e-06 58.5 1189 22.8
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 3.8e-06 58.5 1193 22.8
SEGI_37840 Sequoiadendron giganteum HOM05D028836 ORTHO05D003767 4.9e-06 58.2 94 35.1
unitig_26.g9789 Utricularia gibba HOM05D004021 ORTHO05D003767 4.9e-06 58.2 96 35.4
Lalb_Chr14g0372341 Lupinus albus HOM05D004021 ORTHO05D003767 6.4e-06 57.8 502 22.7
SEGI_32539 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 6.4e-06 57.8 58 46.6
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 8.4e-06 57.4 734 22.5


User provided reference genes

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