Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003604 Camellia sinensis var. sinensis HOM05D005777 ORTHO05D006854 3.7e-227 791.2 395 100.0
Rhsim07G0080700 Rhododendron simsii HOM05D005777 ORTHO05D006854 1.1e-141 507.3 376 70.7
vmacro13879 Vaccinium macrocarpon HOM05D005777 ORTHO05D006854 3.2e-114 416.0 583 45.3
Actinidia22740 Actinidia chinensis HOM05D005777 ORTHO05D006854 3.6e-113 412.5 353 64.0
TAR629G1222 Trochodendron aralioides HOM05D005777 ORTHO05D006854 8.0e-113 411.4 375 58.9
Lj8C204T6 Lonicera japonica HOM05D005777 ORTHO05D006854 9.1e-101 371.3 484 44.2
Atru.chr9.1942 Acer truncatum HOM05D005777 ORTHO05D006854 1.6e-100 370.5 373 50.9
Lsat_1_v5_gn_6_83361 Lactuca sativa HOM05D005777 ORTHO05D006854 3.5e-100 369.4 372 55.1
Cfa011969 Carpinus fangiana HOM05D005777 ORTHO05D006854 5.0e-99 365.5 475 45.3
Nitab4.5_0002367g0090 Nicotiana tabacum HOM05D005777 ORTHO05D006854 5.5e-98 362.1 472 47.0
PGSC0003DMG400012134 Solanum tuberosum HOM05D005777 ORTHO05D006854 1.2e-97 360.9 379 53.0
Nitab4.5_0002793g0030 Nicotiana tabacum HOM05D005777 ORTHO05D006854 2.1e-97 360.1 372 53.5
Solyc08g082720.4 Solanum lycopersicum HOM05D005777 ORTHO05D006854 2.7e-97 359.8 379 53.0
Potri.007G058050 Populus trichocarpa HOM05D005777 ORTHO05D006854 3.6e-97 359.4 380 52.9
Sopen08g030950 Solanum pennellii HOM05D005777 ORTHO05D006854 4.7e-97 359.0 381 53.0
CsaV3_5G001940 Cucumis sativus L. HOM05D005777 ORTHO05D006854 3.0e-96 356.3 382 51.0
Peaxi162Scf00074g00526 Petunia axillaris HOM05D005777 ORTHO05D006854 6.8e-96 355.1 373 53.4
Sed0007946 Sechium edule HOM05D005777 ORTHO05D006854 6.8e-96 355.1 377 50.1
MELO3C033830.2 Cucumis melo HOM05D005777 ORTHO05D006854 8.8e-96 354.8 370 52.2
CAN.G567.32 Capsicum annuum HOM05D005777 ORTHO05D006854 3.7e-94 349.4 378 51.3
ECA240G0322 Erigeron canadensis HOM05D005777 ORTHO05D006854 1.4e-93 347.4 379 52.8
HanXRQChr03g0083721 Helianthus annuus HOM05D005777 ORTHO05D006854 1.8e-93 347.1 374 51.6
MBI07_g24771_MAGBIO Magnolia biondii HOM05D005777 ORTHO05D006854 4.1e-93 345.9 391 49.1
TWI60G0567 Tripterygium wilfordii HOM05D005777 ORTHO05D006854 5.9e-92 342.0 382 47.1
Prupe.5G124500 Prunus persica HOM05D005777 ORTHO05D006854 2.3e-91 340.1 380 48.4
MD06G1111700 Malus domestica HOM05D005777 ORTHO05D006854 5.0e-91 339.0 375 48.8
RcHm_v2.0_Chr7g0186161 Rosa chinensis HOM05D005777 ORTHO05D006854 3.6e-89 332.8 467 44.3
Haze_09107 Corylus avellana HOM05D005777 ORTHO05D006854 4.7e-89 332.4 350 50.9
QL02p029612 Quercus lobata HOM05D005777 ORTHO05D006854 4.7e-89 332.4 356 50.0
Nn1g00296 Nelumbo nucifera HOM05D005777 ORTHO05D006854 2.6e-87 326.6 376 50.8
FAN04G0792 Fragaria x ananassa HOM05D005777 ORTHO05D006854 4.4e-87 325.9 378 47.1
FvH4_5g11630 Fragaria vesca HOM05D005777 ORTHO05D006854 7.5e-87 325.1 467 42.0
Glyma.08G025000 Glycine max HOM05D005777 ORTHO05D006854 4.1e-85 319.3 371 48.8
FAN13G2465 Fragaria x ananassa HOM05D005777 ORTHO05D006854 7.8e-84 315.1 378 45.8
Oeu055021.1 Olea europaea HOM05D005777 ORTHO05D006854 1.1e-82 311.2 277 58.1
Glyma.05G218900 Glycine max HOM05D005777 ORTHO05D006854 1.9e-82 310.5 372 48.1
Lj4g0026879 Lotus japonicus HOM05D005777 ORTHO05D006854 1.6e-81 307.4 371 48.5
FAN18G2480 Fragaria x ananassa HOM05D005777 ORTHO05D006854 5.8e-79 298.9 373 46.9
Lalb_Chr05g0223951 Lupinus albus HOM05D005777 ORTHO05D006854 7.5e-79 298.5 387 44.2
Phvul.002G300700 Phaseolus vulgaris HOM05D005777 ORTHO05D006854 9.8e-79 298.1 372 44.9
CiPaw.11G117200 Carya illinoinensis HOM05D005777 ORTHO05D006854 3.7e-78 296.2 281 55.9
Eucgr.E00747 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.7e-78 296.2 371 43.9
Psat7g024000 Pisum sativum HOM05D005777 ORTHO05D006854 3.7e-78 296.2 368 46.7
CANSAT21G0853 Cannabis sativa HOM05D005777 ORTHO05D006854 7.0e-77 292.0 391 42.5
Medtr8g099725 Medicago truncatula HOM05D005777 ORTHO05D006854 3.3e-74 283.1 368 44.8
Cc08_g16390 Coffea canephora HOM05D005777 ORTHO05D006854 1.6e-73 280.8 260 56.5
Eucgr.E00956 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.6e-73 280.8 371 42.3
Sabra07G0049700 Salix brachista HOM05D005777 ORTHO05D006854 3.6e-73 279.6 407 41.0
Eucgr.E00744 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.1e-72 278.1 371 42.0
Cpa.g.sc79.3 Carica papaya HOM05D005777 ORTHO05D006854 6.8e-72 275.4 255 56.1
Migut.E01651 Erythranthe guttata HOM05D005777 ORTHO05D006854 7.5e-71 271.9 266 54.1
Migut.E00735 Erythranthe guttata HOM05D005777 ORTHO05D006854 1.4e-69 267.7 303 48.5
PGR042G2859 Punica granatum HOM05D005777 ORTHO05D006854 3.2e-69 266.5 379 40.9
Sc01g0010430 Simmondsia chinensis HOM05D005777 ORTHO05D006854 4.1e-69 266.2 278 52.5
Aqoxy5G04312 Aquilegia oxysepala HOM05D005777 ORTHO05D006854 9.2e-69 265.0 392 42.1
Manes.01G049500 Manihot esculenta HOM05D005777 ORTHO05D006854 9.2e-69 265.0 283 53.0
PSO170G4328 Papaver somniferum HOM05D005777 ORTHO05D006854 1.3e-67 261.2 381 41.2
DCAR_006511 Daucus carota HOM05D005777 ORTHO05D006854 1.8e-64 250.8 370 40.5
Ah.12g052840 Amaranthus hybridus HOM05D005777 ORTHO05D006854 3.1e-64 250.0 329 45.6
EL10Ac5g12951 Beta vulgaris HOM05D005777 ORTHO05D006854 4.0e-64 249.6 286 49.0
Hund14203 Selenicereus undatus HOM05D005777 ORTHO05D006854 2.6e-63 246.9 285 52.3
Dinv37498 Davidia involucrata HOM05D005777 ORTHO05D006854 1.2e-60 238.0 200 66.5
FAN08G0729 Fragaria x ananassa HOM05D005777 ORTHO05D006854 2.7e-60 236.9 339 43.4
TPR.G3378 Trifolium pratense HOM05D005777 ORTHO05D006854 1.3e-59 234.6 428 37.4
Thecc.08G166000 Theobroma cacao HOM05D005777 ORTHO05D006854 3.3e-58 229.9 341 40.2
Eucgr.E00762 Eucalyptus grandis HOM05D005777 ORTHO05D006854 7.1e-53 212.2 263 44.1
Ca_17460_v3 Cicer arietinum L. HOM05D005777 ORTHO05D006854 1.2e-49 201.4 372 37.9
Eucgr.E00939 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.6e-49 199.9 196 52.6
VMungo0251G0419 Vigna mungo HOM05D003100 ORTHO05D003533 8.1e-49 198.7 408 34.8
Eucgr.E00752 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.4e-48 198.0 374 35.8
Gorai.005G117300 Gossypium raimondii HOM05D005777 ORTHO05D006854 1.4e-48 198.0 263 44.1
Gohir.A02G088000 Gossypium hirsutum HOM05D005777 ORTHO05D006854 1.8e-48 197.6 263 43.7
FAN18G2579 Fragaria x ananassa HOM05D005777 ORTHO05D006854 3.4e-47 193.4 367 36.5
AUR62019875 Chenopodium quinoa HOM05D005777 ORTHO05D006854 6.4e-46 189.1 228 45.2
Duzib116G0305 Durio zibethinus HOM05D005777 ORTHO05D006854 4.6e-44 183.0 237 42.6
Ciclev10023874m.g Citrus clementina HOM05D005777 ORTHO05D006854 2.4e-40 170.6 156 55.8
GSVIVG01019597001 Vitis vinifera HOM05D005777 ORTHO05D006854 1.5e-39 167.9 136 61.0
SGA_v2.0_scaffold74G24601 Striga asiatica HOM05D005777 ORTHO05D006854 2.6e-39 167.2 280 37.1
ATR0602G092 Amborella trichopoda HOM05D005777 ORTHO05D006854 2.2e-38 164.1 290 37.6
Ciclev10023944m.g Citrus clementina HOM05D005777 ORTHO05D006854 2.9e-38 163.7 222 41.0
HPP92_024143 Vanilla planifolia HOM05D005777 ORTHO05D006854 4.9e-38 162.9 235 41.3
COL.COLO4_25066 Corchorus olitorius HOM05D000316 ORTHO05D006854 1.2e-36 158.3 231 39.8
Lsat_1_v5_gn_5_82800 Lactuca sativa HOM05D005777 ORTHO05D006854 7.9e-36 155.6 297 37.0
Lsat_1_v5_gn_9_112141 Lactuca sativa HOM05D005777 ORTHO05D006854 1.0e-35 155.2 128 62.5
Eucgr.E00969 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.1e-33 147.5 169 46.2
Eucgr.E00749 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.8e-33 146.4 157 48.4
Eucgr.E01013 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.4e-32 144.1 169 45.6
Eucgr.E00900 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.1e-32 143.7 169 46.2
Actinidia27306 Actinidia chinensis HOM05D005777 ORTHO05D006854 1.4e-29 134.8 70 90.0
Thhalv10028849m.g Eutrema salsugineum HOM05D005777 ORTHO05D006854 1.4e-29 134.8 164 48.8
Eucgr.E00726 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.7e-28 130.6 134 50.7
AUR62007011 Chenopodium quinoa HOM05D005777 ORTHO05D006854 6.0e-28 129.4 280 33.2
THA.LOC104813047 Tarenaya hassleriana HOM05D005777 ORTHO05D006854 2.3e-27 127.5 160 46.2
FAN04G0565 Fragaria x ananassa HOM05D005777 ORTHO05D006854 3.9e-27 126.7 100 60.0
Sp6g06640 Schrenkiella parvula HOM05D005777 ORTHO05D006854 1.6e-25 121.3 164 45.1
Eucgr.E00696 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.8e-25 120.6 144 44.4
Eucgr.E00912 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.8e-25 120.6 109 51.4
CDE03G0022 Ceratophyllum demersum HOM05D002476 ORTHO05D002652 3.1e-24 117.1 93 58.1
Carub.0006s2962 Capsella rubella HOM05D005777 ORTHO05D006854 4.0e-24 116.7 162 43.2
BcaB01g01556 Brassica carinata HOM05D005777 ORTHO05D006854 5.3e-24 116.3 150 46.0
Os09g0363400 Oryza sativa ssp. japonica HOM05D005777 ORTHO05D006854 1.5e-23 114.8 257 28.4
AL6G44960 Arabidopsis lyrata HOM05D005777 ORTHO05D006854 4.5e-23 113.2 162 42.0
AT4G10890 Arabidopsis thaliana HOM05D005777 ORTHO05D006854 1.3e-22 111.7 159 41.5
CARHR255730 Cardamine hirsuta HOM05D005777 ORTHO05D006854 1.3e-22 111.7 167 41.9
Eucgr.E00895 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.3e-22 111.7 131 44.3
Eucgr.E00894 Eucalyptus grandis HOM05D005777 ORTHO05D006854 6.5e-22 109.4 108 51.9
BraA09t38398Z Brassica rapa HOM05D005777 ORTHO05D006854 8.4e-22 109.0 162 38.9
BcaC04g21086 Brassica carinata HOM05D005777 ORTHO05D006854 4.2e-21 106.7 156 41.0
C09p35860 Brassica napus HOM05D005777 ORTHO05D006854 3.5e-20 103.6 156 39.7
BolC9t56419H Brassica oleracea HOM05D005777 ORTHO05D006854 3.9e-19 100.1 156 39.1
A09p28290 Brassica napus HOM05D005777 ORTHO05D006854 5.1e-19 99.8 162 38.9
Aa31LG9G11240 Aethionema arabicum HOM05D005777 ORTHO05D006854 9.7e-18 95.5 97 49.5
Eucgr.E00686 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.4e-16 91.7 88 52.3
SHI06955 Sapria himalayana HOM05D005777 ORTHO05D006854 1.0e-14 85.5 69 59.4
Eucgr.H03743 Eucalyptus grandis HOM05D005777 ORTHO05D006854 8.5e-14 82.4 77 53.2
Hma1.2p1_0338F.1_g129700 Hydrangea macrophylla HOM05D005777 ORTHO05D006854 2.7e-12 77.4 65 55.4
QL06p042986 Quercus lobata HOM05D000529 ORTHO05D000472 6.1e-12 76.3 77 46.8
QL08p034398 Quercus lobata HOM05D000176 ORTHO05D000106 1.4e-11 75.1 91 42.9
Gohir.D02G103200 Gossypium hirsutum HOM05D005777 ORTHO05D006854 2.3e-11 74.3 103 38.8
FAN18G0036 Fragaria x ananassa HOM05D005777 ORTHO05D006854 2.8e-09 67.4 35 82.9
Lsat_1_v5_gn_3_40061 Lactuca sativa HOM05D005777 ORTHO05D006854 1.8e-08 64.7 104 36.5
PSO063G6181 Papaver somniferum HOM05D005777 ORTHO05D006854 1.2e-07 62.0 54 53.7
Lsat_1_v5_gn_8_138920 Lactuca sativa HOM05D005777 ORTHO05D006854 4.5e-07 60.1 142 32.4
AagrBONN_evm.TU.Sc2ySwM_368.2767 Anthoceros agrestis HOM05D005777 ORTHO05D006854 1.0e-06 58.9 73 41.1
HanXRQChr03g0083731 Helianthus annuus HOM05D005777 ORTHO05D006854 1.7e-06 58.2 46 60.9
Eucgr.H03760 Eucalyptus grandis HOM05D005777 ORTHO05D006854 5.0e-06 56.6 60 51.7


User provided reference genes

Program Settings