Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 6.2e-42 173.7 88 100.0
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 9.9e-32 139.8 72 100.0
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 6.7e-28 127.1 71 85.9
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 2.5e-27 125.2 72 87.5
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 3.3e-27 124.8 69 87.0
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 7.4e-27 123.6 70 84.3
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 2.1e-26 122.1 70 82.9
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 2.1e-26 122.1 70 82.9
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.1e-26 122.1 69 85.5
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 2.1e-26 122.1 69 87.0
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 4.8e-26 120.9 69 84.1
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 6.2e-26 120.6 69 84.1
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 8.2e-26 120.2 69 85.5
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 1.1e-25 119.8 69 81.2
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 1.1e-25 119.8 69 82.6
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 1.1e-25 119.8 69 82.6
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 1.4e-25 119.4 71 84.5
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 1.4e-25 119.4 69 82.6
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 1.8e-25 119.0 70 82.9
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 1.8e-25 119.0 72 80.6
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 1.8e-25 119.0 72 81.9
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 2.4e-25 118.6 72 79.2
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 2.4e-25 118.6 70 81.4
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 2.4e-25 118.6 69 82.6
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 2.4e-25 118.6 69 84.1
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 3.1e-25 118.2 69 79.7
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 3.1e-25 118.2 69 79.7
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 3.1e-25 118.2 72 81.9
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 3.1e-25 118.2 69 82.6
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 4.0e-25 117.9 69 81.2
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 4.0e-25 117.9 72 80.6
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 4.0e-25 117.9 69 84.1
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 4.0e-25 117.9 70 80.0
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 5.3e-25 117.5 71 81.7
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 5.3e-25 117.5 70 82.9
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 5.3e-25 117.5 72 80.6
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 6.9e-25 117.1 69 79.7
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 6.9e-25 117.1 69 79.7
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 6.9e-25 117.1 72 80.6
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 9.0e-25 116.7 69 79.7
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 9.0e-25 116.7 69 82.6
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 1.2e-24 116.3 72 79.2
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 1.2e-24 116.3 69 78.3
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 1.5e-24 115.9 72 81.9
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 1.5e-24 115.9 69 82.6
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 1.5e-24 115.9 69 82.6
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 1.5e-24 115.9 69 82.6
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 2.0e-24 115.5 72 79.2
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 2.0e-24 115.5 69 79.7
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 2.0e-24 115.5 69 82.6
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 2.0e-24 115.5 69 78.3
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 2.0e-24 115.5 70 80.0
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 2.6e-24 115.2 72 77.8
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 2.6e-24 115.2 72 80.6
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 4.5e-24 114.4 69 79.7
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 4.5e-24 114.4 69 79.7
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 4.5e-24 114.4 70 77.1
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 5.8e-24 114.0 70 77.1
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 7.6e-24 113.6 69 78.3
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 7.6e-24 113.6 69 79.7
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 1.0e-23 113.2 69 76.8
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 1.0e-23 113.2 70 74.3
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 1.0e-23 113.2 69 78.3
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 1.0e-23 113.2 69 81.2
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 1.0e-23 113.2 69 81.2
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 1.3e-23 112.8 69 78.3
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 1.3e-23 112.8 69 78.3
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 1.3e-23 112.8 69 78.3
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 1.3e-23 112.8 69 78.3
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 1.3e-23 112.8 85 65.9
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 1.3e-23 112.8 72 76.4
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 1.3e-23 112.8 69 76.8
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 1.7e-23 112.5 69 76.8
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 1.7e-23 112.5 69 76.8
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 2.9e-23 111.7 72 73.6
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 2.9e-23 111.7 69 78.3
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 3.8e-23 111.3 69 78.3
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 3.8e-23 111.3 69 76.8
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 3.8e-23 111.3 72 72.2
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 3.8e-23 111.3 72 76.4
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 4.9e-23 110.9 72 77.8
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 4.9e-23 110.9 72 75.0
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 4.9e-23 110.9 72 76.4
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 6.5e-23 110.5 71 76.1
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 1.1e-22 109.8 71 73.2
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 1.4e-22 109.4 78 69.2
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 1.4e-22 109.4 69 76.8
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 1.9e-22 109.0 69 76.8
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 1.9e-22 109.0 69 75.4
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 2.5e-22 108.6 69 76.8
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 2.5e-22 108.6 69 76.8
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 3.2e-22 108.2 72 76.4
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 3.2e-22 108.2 78 69.2
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 4.2e-22 107.8 70 74.3
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 7.1e-22 107.1 85 63.5
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 7.1e-22 107.1 85 63.5
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 9.3e-22 106.7 68 75.0
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 1.2e-21 106.3 72 70.8
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 1.2e-21 106.3 69 75.4
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 1.2e-21 106.3 78 69.2
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 2.7e-21 105.1 68 75.0
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 4.6e-21 104.4 85 62.4
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 1.0e-20 103.2 69 73.9
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 1.3e-20 102.8 69 72.5
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.8e-20 102.4 72 69.4
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 6.7e-20 100.5 69 71.0
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 6.7e-20 100.5 70 70.0
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 1.1e-19 99.8 72 66.7
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 5.7e-19 97.4 72 65.3
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.6e-18 95.9 69 62.3
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 2.2e-18 95.5 74 68.9
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 2.2e-18 95.5 69 63.8
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 2.8e-18 95.1 85 55.3
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 4.8e-18 94.4 69 65.2
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.1e-17 93.2 69 71.0
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 1.4e-17 92.8 70 64.3
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.8e-17 92.4 51 96.1
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 3.1e-17 91.7 69 69.6
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 4.1e-17 91.3 69 65.2
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 2.6e-16 88.6 71 62.0
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 2.6e-16 88.6 56 75.0
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 3.4e-16 88.2 69 63.8
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 4.5e-16 87.8 73 65.8
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 7.7e-16 87.0 71 66.2
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 1.3e-15 86.3 69 63.8
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 1.7e-15 85.9 69 68.1
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 3.2e-14 81.6 71 62.0
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 5.5e-14 80.9 70 60.0
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 7.2e-14 80.5 83 53.0
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 1.2e-13 79.7 71 54.9
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 2.7e-13 78.6 72 56.9
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 1.0e-12 76.6 72 63.9
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 1.8e-12 75.9 71 56.3
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 1.3e-10 69.7 34 85.3
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 6.3e-10 67.4 34 82.4
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 1.5e-08 62.8 69 58.0
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 2.2e-07 58.9 39 84.6
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 3.8e-07 58.2 34 67.6
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 1.4e-06 56.2 37 81.1


User provided reference genes

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