Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003595 Camellia sinensis var. sinensis HOM05D026628 ORTHO05D000368 2.4e-110 402.1 194 100.0
CSS0015026 Camellia sinensis var. sinensis HOM05D026628 ORTHO05D000368 1.7e-100 369.4 204 90.7
CSS0023267 Camellia sinensis var. sinensis HOM05D026628 ORTHO05D000368 7.9e-90 334.0 204 84.8
CSS0024519 Camellia sinensis var. sinensis HOM05D026628 ORTHO05D000368 4.1e-86 321.6 199 81.4
QL03p004102 Quercus lobata HOM05D000576 ORTHO05D000368 2.1e-26 123.2 144 53.5
Actinidia23749 Actinidia chinensis HOM05D000576 ORTHO05D000368 2.9e-23 112.8 135 51.9
Dinv26720 Davidia involucrata HOM05D000576 ORTHO05D000368 1.2e-13 80.9 131 42.7
QL10p005853 Quercus lobata HOM05D000576 ORTHO05D000368 6.0e-13 78.6 149 36.9
QL10p005342 Quercus lobata HOM05D000576 ORTHO05D000368 1.3e-12 77.4 139 41.7
QL03p059577 Quercus lobata HOM05D000576 ORTHO05D000368 1.5e-11 73.9 132 40.9
vmacro19410 Vaccinium macrocarpon HOM05D000576 ORTHO05D000368 1.5e-11 73.9 146 37.7
TAR636G3326 Trochodendron aralioides HOM05D000576 ORTHO05D000368 4.3e-11 72.4 144 34.0
vmacro18523 Vaccinium macrocarpon HOM05D000576 ORTHO05D000368 7.3e-11 71.6 138 35.5
Rhsim08G0187200 Rhododendron simsii HOM05D000576 ORTHO05D000368 9.6e-11 71.2 132 39.4
Cfa013470 Carpinus fangiana HOM05D000576 ORTHO05D000368 1.3e-10 70.9 141 34.8
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 1.3e-10 70.9 146 36.3
VMungo1215G3115 Vigna mungo HOM05D000576 ORTHO05D000368 3.6e-10 69.3 129 37.2
Dinv01310 Davidia involucrata HOM05D000576 ORTHO05D000368 6.2e-10 68.6 131 39.7
Prupe.3G194200 Prunus persica HOM05D000576 ORTHO05D000368 6.2e-10 68.6 133 38.3
Cc03_g13650 Coffea canephora HOM05D000576 ORTHO05D000368 3.1e-09 66.2 184 30.4
COL.COLO4_14292 Corchorus olitorius HOM05D000576 ORTHO05D000368 3.1e-09 66.2 141 38.3
TAR636G0024 Trochodendron aralioides HOM05D000576 ORTHO05D000368 4.0e-09 65.9 147 32.0
Hma1.2p1_0183F.1_g081070 Hydrangea macrophylla HOM05D000576 ORTHO05D000368 5.3e-09 65.5 138 37.7
Lalb_Chr06g0172321 Lupinus albus HOM05D000576 ORTHO05D000368 5.3e-09 65.5 149 34.2
Hma1.2p1_0728F.1_g209430 Hydrangea macrophylla HOM05D000576 ORTHO05D000368 6.9e-09 65.1 201 27.9
Lalb_Chr07g0183351 Lupinus albus HOM05D000576 ORTHO05D000368 6.9e-09 65.1 154 33.1
TWI32G0666 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 9.0e-09 64.7 131 37.4
TWI63G0496 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 9.0e-09 64.7 159 34.0
COL.COLO4_13160 Corchorus olitorius HOM05D000576 ORTHO05D000368 1.2e-08 64.3 152 32.2
Phvul.003G209900 Phaseolus vulgaris HOM05D000576 ORTHO05D000368 1.2e-08 64.3 135 34.1
Duzib248G1067 Durio zibethinus HOM05D000576 ORTHO05D000368 2.0e-08 63.5 154 31.8
Medtr4g103670 Medicago truncatula HOM05D000576 ORTHO05D000368 2.0e-08 63.5 146 33.6
TWI63G0443 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 2.6e-08 63.2 149 32.2
AUR62019287 Chenopodium quinoa HOM05D000576 ORTHO05D000368 3.4e-08 62.8 189 28.6
Ciclev10031551m.g Citrus clementina HOM05D000576 ORTHO05D000368 3.4e-08 62.8 135 37.8
COL.COLO4_29714 Corchorus olitorius HOM05D000576 ORTHO05D000368 3.4e-08 62.8 141 38.3
COL.COLO4_14986 Corchorus olitorius HOM05D000576 ORTHO05D000368 4.5e-08 62.4 141 36.9
Glyma.05G047000 Glycine max HOM05D000576 ORTHO05D000368 4.5e-08 62.4 131 36.6
Manes.03G198700 Manihot esculenta HOM05D000576 ORTHO05D000368 4.5e-08 62.4 136 36.8
TPR.G30007 Trifolium pratense HOM05D000576 ORTHO05D000368 4.5e-08 62.4 139 33.1
TWI63G0561 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 4.5e-08 62.4 132 37.9
TAR371G0526 Trochodendron aralioides HOM05D000576 ORTHO05D000368 5.8e-08 62.0 150 32.0
AUR62001487 Chenopodium quinoa HOM05D000576 ORTHO05D000368 7.6e-08 61.6 142 33.8
Lj5A96T52 Lonicera japonica HOM05D000576 ORTHO05D000368 7.6e-08 61.6 137 32.1
Dinv04865 Davidia involucrata HOM05D000576 ORTHO05D000368 9.9e-08 61.2 131 36.6
Lj6P729T22 Lonicera japonica HOM05D000576 ORTHO05D000368 9.9e-08 61.2 131 38.2
Prupe.8G213700 Prunus persica HOM05D000576 ORTHO05D000368 9.9e-08 61.2 147 34.0
Ciclev10011606m.g Citrus clementina HOM05D000576 ORTHO05D000368 1.3e-07 60.8 164 34.1
Ciclev10011607m.g Citrus clementina HOM05D000576 ORTHO05D000368 1.3e-07 60.8 164 34.1
COL.COLO4_02753 Corchorus olitorius HOM05D000576 ORTHO05D000368 1.3e-07 60.8 148 29.7
RcHm_v2.0_Chr3g0480841 Rosa chinensis HOM05D000576 ORTHO05D000368 1.3e-07 60.8 143 35.7
AUR62001484 Chenopodium quinoa HOM05D000576 ORTHO05D000368 1.7e-07 60.5 139 33.1
Prupe.7G069200 Prunus persica HOM05D000576 ORTHO05D000368 1.7e-07 60.5 136 37.5
Hund16568 Selenicereus undatus HOM05D000576 ORTHO05D000368 1.7e-07 60.5 151 35.8
arahy.Tifrunner.gnm1.ann1.RZZ8M9 Arachis hypogaea HOM05D000576 ORTHO05D000368 2.2e-07 60.1 140 32.1
Cfa001772 Carpinus fangiana HOM05D000576 ORTHO05D000368 2.9e-07 59.7 146 32.9
Glyma.17G128800 Glycine max HOM05D000576 ORTHO05D000368 2.9e-07 59.7 132 34.8
arahy.Tifrunner.gnm1.ann1.ZMI5M5 Arachis hypogaea HOM05D000576 ORTHO05D000368 3.8e-07 59.3 130 33.8
ClCG06G017710 Citrullus lanatus HOM05D000576 ORTHO05D000368 3.8e-07 59.3 150 32.7
Prupe.8G038200 Prunus persica HOM05D000576 ORTHO05D000368 4.9e-07 58.9 139 36.0
TWI63G1035 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 4.9e-07 58.9 146 30.8
Hma1.2p1_0108F.1_g052030 Hydrangea macrophylla HOM05D000576 ORTHO05D000368 6.4e-07 58.5 151 28.5
Ciclev10033832m.g Citrus clementina HOM05D000576 ORTHO05D000368 8.4e-07 58.2 143 35.0
Gohir.D08G134100 Gossypium hirsutum HOM05D000576 ORTHO05D000368 8.4e-07 58.2 141 31.2
Lj5A109G69 Lonicera japonica HOM05D000576 ORTHO05D000368 8.4e-07 58.2 133 36.1
AUR62019267 Chenopodium quinoa HOM05D000576 ORTHO05D000368 1.1e-06 57.8 187 26.2
EL10Ac5g10961 Beta vulgaris HOM05D000576 ORTHO05D000368 1.4e-06 57.4 140 35.7
Gorai.004G137200 Gossypium raimondii HOM05D000576 ORTHO05D000368 1.4e-06 57.4 141 31.2
RcHm_v2.0_Chr2g0105211 Rosa chinensis HOM05D000576 ORTHO05D000368 1.4e-06 57.4 142 28.9
FAN05G5531 Fragaria x ananassa HOM05D000576 ORTHO05D000368 1.9e-06 57.0 150 28.7
FAN26G3129 Fragaria x ananassa HOM05D000576 ORTHO05D000368 1.9e-06 57.0 143 35.0
Cc02_g06350 Coffea canephora HOM05D000576 ORTHO05D000368 2.4e-06 56.6 144 31.9
Dinv21743 Davidia involucrata HOM05D000576 ORTHO05D000368 2.4e-06 56.6 121 33.9
Lj9A559T48 Lonicera japonica HOM05D000576 ORTHO05D000368 2.4e-06 56.6 151 35.1
CsaV3_1G000750 Cucumis sativus L. HOM05D000576 ORTHO05D000368 3.2e-06 56.2 150 30.7
ECA238G1856 Erigeron canadensis HOM05D000576 ORTHO05D000368 3.2e-06 56.2 136 32.4
TWI31G1446 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 4.2e-06 55.8 136 33.8
Oeu048256.1 Olea europaea HOM05D000576 ORTHO05D000368 5.4e-06 55.5 133 34.6
Actinidia24869 Actinidia chinensis HOM05D021695 ORTHO05D013658 7.1e-06 55.1 45 68.9
Lj4A510T17 Lonicera japonica HOM05D000576 ORTHO05D000368 7.1e-06 55.1 136 34.6
Lj7A552T59 Lonicera japonica HOM05D000576 ORTHO05D000368 7.1e-06 55.1 138 37.0
MD14G1064800 Malus domestica HOM05D000576 ORTHO05D000368 7.1e-06 55.1 137 35.0
CSS0021660 Camellia sinensis var. sinensis HOM05D000576 ORTHO05D000368 9.3e-06 54.7 138 37.0
FAN05G3726 Fragaria x ananassa HOM05D000576 ORTHO05D000368 9.3e-06 54.7 150 27.3
MD02G1024500 Malus domestica HOM05D000576 ORTHO05D000368 9.3e-06 54.7 219 28.3
Manes.11G129716 Manihot esculenta HOM05D000576 ORTHO05D000368 9.3e-06 54.7 142 31.7
Prupe.1G496800 Prunus persica HOM05D000576 ORTHO05D000368 9.3e-06 54.7 108 37.0
Prupe.I001500 Prunus persica HOM05D000576 ORTHO05D000368 9.3e-06 54.7 150 32.7
RcHm_v2.0_Chr3g0449821 Rosa chinensis HOM05D000576 ORTHO05D000368 9.3e-06 54.7 188 25.5


User provided reference genes

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