Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003584 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D009161 5.6e-77 290.8 141 100.0
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 3.4e-58 228.4 141 76.6
Potri.009G085700 Populus trichocarpa HOM05D001568 ORTHO05D009161 1.3e-54 216.5 152 67.8
Rhsim05G0092800 Rhododendron simsii HOM05D001568 ORTHO05D009161 3.9e-54 214.9 156 68.6
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 6.7e-54 214.2 155 69.7
Sabra09G0065800 Salix brachista HOM05D001568 ORTHO05D009161 1.5e-53 213.0 137 71.5
Prupe.8G149700 Prunus persica HOM05D001568 ORTHO05D009161 1.6e-52 209.5 152 67.1
RcHm_v2.0_Chr6g0248511 Rosa chinensis HOM05D001568 ORTHO05D009161 3.6e-52 208.4 158 67.1
QL11p029372 Quercus lobata HOM05D001568 ORTHO05D009161 8.1e-52 207.2 152 69.1
TAR625G0338 Trochodendron aralioides HOM05D001568 ORTHO05D009161 1.1e-51 206.8 158 65.2
Nitab4.5_0011705g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 2.4e-51 205.7 154 67.5
FvH4_2g03350 Fragaria vesca HOM05D001568 ORTHO05D009161 3.1e-51 205.3 139 69.1
CiPaw.06G164200 Carya illinoinensis HOM05D001568 ORTHO05D009161 6.9e-51 204.1 155 65.8
Cc00_g18000 Coffea canephora HOM05D001568 ORTHO05D009161 6.9e-51 204.1 146 67.8
FAN27G2772 Fragaria x ananassa HOM05D001568 ORTHO05D009161 9.0e-51 203.8 157 64.3
Actinidia27999 Actinidia chinensis HOM05D001568 ORTHO05D009161 1.2e-50 203.4 131 74.0
Nitab4.5_0001458g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 1.2e-50 203.4 144 68.1
Cfa004703 Carpinus fangiana HOM05D001568 ORTHO05D009161 1.5e-50 203.0 154 66.2
FAN15G0831 Fragaria x ananassa HOM05D001568 ORTHO05D009161 3.4e-50 201.8 155 65.2
PSO675G4557 Papaver somniferum HOM05D001568 ORTHO05D009161 3.4e-50 201.8 154 62.3
FvH4_2g03390 Fragaria vesca HOM05D001568 ORTHO05D009161 5.8e-50 201.1 155 65.8
MD10G1109900 Malus domestica HOM05D001568 ORTHO05D009161 5.8e-50 201.1 138 69.6
Nn5g30651 Nelumbo nucifera HOM05D001568 ORTHO05D009161 5.8e-50 201.1 154 62.3
FAN24G0656 Fragaria x ananassa HOM05D001568 ORTHO05D009161 9.9e-50 200.3 139 67.6
PSO541G2903 Papaver somniferum HOM05D001568 ORTHO05D009161 2.2e-49 199.1 143 65.7
Prupe.8G150000 Prunus persica HOM05D001568 ORTHO05D009161 1.4e-48 196.4 153 62.7
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 2.4e-48 195.7 139 65.5
TWI23G0417 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 2.4e-48 195.7 139 66.9
Duzib132G0829 Durio zibethinus HOM05D001568 ORTHO05D009161 5.5e-48 194.5 157 61.1
THA.LOC104804397 Tarenaya hassleriana HOM05D001568 ORTHO05D009161 5.5e-48 194.5 160 62.5
Atru.chr5.2303 Acer truncatum HOM05D001568 ORTHO05D009161 7.1e-48 194.1 150 61.3
Peaxi162Scf00003g02812 Petunia axillaris HOM05D001568 ORTHO05D009161 7.1e-48 194.1 138 68.1
Solyc10g048190.1 Solanum lycopersicum HOM05D001568 ORTHO05D009161 1.2e-47 193.4 137 66.4
Cpa.g.sc91.59 Carica papaya HOM05D001568 ORTHO05D009161 2.7e-47 192.2 148 64.9
CAN.G1427.5 Capsicum annuum HOM05D001568 ORTHO05D009161 3.5e-47 191.8 140 65.0
TWI59G0351 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 3.5e-47 191.8 154 62.3
Thhalv10023010m.g Eutrema salsugineum HOM05D001568 ORTHO05D009161 6.0e-47 191.0 153 62.1
BcaC06g36001 Brassica carinata HOM05D001568 ORTHO05D009161 1.8e-46 189.5 152 62.5
C07p09120 Brassica napus HOM05D001568 ORTHO05D009161 1.8e-46 189.5 152 62.5
BolC7t41323H Brassica oleracea HOM05D001568 ORTHO05D009161 1.8e-46 189.5 152 62.5
CANSAT25G2862 Cannabis sativa HOM05D001568 ORTHO05D009161 1.8e-46 189.5 156 60.9
Duzib248G0869 Durio zibethinus HOM05D001568 ORTHO05D009161 1.8e-46 189.5 154 62.3
A07p05850 Brassica napus HOM05D001568 ORTHO05D009161 2.3e-46 189.1 152 62.5
Lj1g0027535 Lotus japonicus HOM05D001568 ORTHO05D009161 2.3e-46 189.1 138 69.6
A07p05700 Brassica napus HOM05D001568 ORTHO05D009161 3.0e-46 188.7 152 62.5
BraA07t28378Z Brassica rapa HOM05D001568 ORTHO05D009161 3.0e-46 188.7 152 62.5
Sp3g27770 Schrenkiella parvula HOM05D001568 ORTHO05D009161 3.0e-46 188.7 152 63.2
Gorai.013G051500 Gossypium raimondii HOM05D001568 ORTHO05D009161 3.9e-46 188.3 142 64.8
Aqoxy5G00361 Aquilegia oxysepala HOM05D001568 ORTHO05D009161 6.7e-46 187.6 140 63.6
AL3G46300 Arabidopsis lyrata HOM05D001568 ORTHO05D009161 6.7e-46 187.6 154 62.3
Gohir.D13G046000 Gossypium hirsutum HOM05D001568 ORTHO05D009161 1.1e-45 186.8 142 64.1
Lsat_1_v5_gn_5_117140 Lactuca sativa HOM05D001568 ORTHO05D009161 1.1e-45 186.8 150 65.3
Thecc.02G119600 Theobroma cacao HOM05D001568 ORTHO05D009161 1.1e-45 186.8 156 61.5
CARHR286340 Cardamine hirsuta HOM05D001568 ORTHO05D009161 1.5e-45 186.4 147 62.6
Gohir.A13G047700 Gossypium hirsutum HOM05D001568 ORTHO05D009161 2.5e-45 185.7 142 63.4
PGR142G3835 Punica granatum HOM05D001568 ORTHO05D009161 2.5e-45 185.7 153 60.8
Manes.10G086600 Manihot esculenta HOM05D001568 ORTHO05D009161 3.3e-45 185.3 148 60.8
PSO541G3645 Papaver somniferum HOM05D001568 ORTHO05D009161 3.3e-45 185.3 145 60.0
Sc01g0002530 Simmondsia chinensis HOM05D001568 ORTHO05D009161 5.6e-45 184.5 152 62.5
BraA07t28366Z Brassica rapa HOM05D001568 ORTHO05D009161 7.4e-45 184.1 153 62.1
MBI16_g39097_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 9.6e-45 183.7 135 62.2
unitig_0.g633 Utricularia gibba HOM05D001568 ORTHO05D009161 9.6e-45 183.7 140 60.7
AT2G14660 Arabidopsis thaliana HOM05D001568 ORTHO05D009161 1.3e-44 183.3 158 59.5
BcaB05g22586 Brassica carinata HOM05D001568 ORTHO05D009161 1.6e-44 183.0 156 62.8
Carub.0003s2869 Capsella rubella HOM05D001568 ORTHO05D009161 2.1e-44 182.6 157 61.1
HanXRQChr10g0305111 Helianthus annuus HOM05D001568 ORTHO05D009161 2.1e-44 182.6 157 61.1
COL.COLO4_32488 Corchorus olitorius HOM05D001568 ORTHO05D009161 2.8e-44 182.2 160 56.2
PGSC0003DMG400012841 Solanum tuberosum HOM05D001568 ORTHO05D009161 2.8e-44 182.2 145 62.8
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 6.2e-44 181.0 145 62.8
Sed0014293 Sechium edule HOM05D001568 ORTHO05D009161 6.2e-44 181.0 139 62.6
CDE07G0917 Ceratophyllum demersum HOM05D001568 ORTHO05D009161 1.8e-43 179.5 142 62.0
MSTRG.20237 Avicennia marina HOM05D001568 ORTHO05D009161 9.0e-43 177.2 151 61.6
MELO3C018021.2 Cucumis melo HOM05D001568 ORTHO05D009161 1.2e-42 176.8 150 60.0
Glyma.01G241600 Glycine max HOM05D001568 ORTHO05D009161 1.2e-42 176.8 137 65.7
ClCG10G010070 Citrullus lanatus HOM05D001568 ORTHO05D009161 1.5e-42 176.4 150 60.0
CsaV3_4G000110 Cucumis sativus L. HOM05D001568 ORTHO05D009161 5.8e-42 174.5 151 58.9
Lalb_Chr20g0110071 Lupinus albus HOM05D001568 ORTHO05D009161 2.2e-41 172.6 150 56.7
Migut.B00461 Erythranthe guttata HOM05D001568 ORTHO05D009161 2.9e-41 172.2 156 60.9
Medtr5g005350 Medicago truncatula HOM05D001568 ORTHO05D009161 3.8e-41 171.8 145 62.8
Phvul.002G050900 Phaseolus vulgaris HOM05D001568 ORTHO05D009161 3.8e-41 171.8 132 67.4
TPR.G8318 Trifolium pratense HOM05D001568 ORTHO05D009161 3.8e-41 171.8 144 63.9
SGA_v2.0_scaffold32G12987 Striga asiatica HOM05D001568 ORTHO05D009161 1.1e-40 170.2 137 59.9
Ah.08g217180 Amaranthus hybridus HOM05D001035 ORTHO05D001045 4.2e-40 168.3 142 59.9
EL10Ac1g00245 Beta vulgaris HOM05D001568 ORTHO05D009161 2.1e-39 166.0 148 59.5
VMungo1215G1258 Vigna mungo HOM05D001568 ORTHO05D009161 1.3e-38 163.3 132 65.2
SHI05019 Sapria himalayana HOM05D001568 ORTHO05D009161 2.5e-37 159.1 141 57.4
HPP92_026656 Vanilla planifolia HOM05D001568 ORTHO05D009161 1.8e-35 152.9 148 52.7
HPP92_015706 Vanilla planifolia HOM05D001568 ORTHO05D009161 2.4e-35 152.5 148 52.7
ATR0739G196 Amborella trichopoda HOM05D001568 ORTHO05D009161 9.0e-35 150.6 134 52.2
Os03g0676100 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 3.4e-34 148.7 165 51.5
MBI16_g27033_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 4.5e-34 148.3 134 53.0
Sopen10g020220 Solanum pennellii HOM05D001568 ORTHO05D009161 5.9e-34 147.9 92 72.8
AUR62023444 Chenopodium quinoa HOM05D001568 ORTHO05D009161 4.2e-32 141.7 101 69.3
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 6.1e-31 137.9 133 54.1
AUR62004510 Chenopodium quinoa HOM05D001568 ORTHO05D009161 7.9e-31 137.5 109 67.0
Zm00001eb217400 Zea mays HOM05D001568 ORTHO05D009161 1.0e-30 137.1 143 51.7
Lj9P337T35 Lonicera japonica HOM05D001568 ORTHO05D009161 1.3e-30 136.7 107 61.7
Psat4g228720 Pisum sativum HOM05D001568 ORTHO05D009161 1.1e-29 133.7 102 66.7
SEGI_07672 Sequoiadendron giganteum HOM05D001568 ORTHO05D009161 3.3e-29 132.1 135 47.4
CBR_g38178 Chara braunii HOM05D001568 ORTHO05D009161 4.8e-28 128.3 134 47.8
AagrBONN_evm.TU.Sc2ySwM_117.3519 Anthoceros agrestis HOM05D001568 ORTHO05D009161 8.2e-28 127.5 133 48.9
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 1.1e-27 127.1 128 53.1
Mapoly0117s0004 Marchantia polymorpha HOM05D001568 ORTHO05D009161 2.6e-26 122.5 133 47.4
Oeu037289.1 Olea europaea HOM05D001568 ORTHO05D009161 1.1e-24 117.1 133 49.6
Medtr8g027785 Medicago truncatula HOM05D001568 ORTHO05D009161 1.9e-24 116.3 146 47.3
Pp3c10_11040 Physcomitrium patens HOM05D001568 ORTHO05D009161 5.5e-24 114.8 133 47.4
ECA234G4452 Erigeron canadensis HOM05D000058 ORTHO05D000255 2.8e-20 102.4 84 63.1
MD05G1105400 Malus domestica HOM05D001568 ORTHO05D009161 1.1e-19 100.5 101 49.5
BcaB03g16261 Brassica carinata HOM05D001568 ORTHO05D009161 6.9e-19 97.8 114 47.4
Os08g0485300 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 4.2e-16 88.6 103 47.6
COL.COLO4_02194 Corchorus olitorius HOM05D001568 ORTHO05D009161 2.6e-13 79.3 122 40.2
MCO07G364 Micromonas commoda HOM05D001568 ORTHO05D009161 9.1e-11 70.9 164 31.7
Cre12.g497650 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D009161 3.5e-10 68.9 157 31.8


User provided reference genes

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