Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003574 Camellia sinensis var. sinensis HOM05D006784 ORTHO05D008508 2.0e-183 645.6 320 100.0
Dinv08766 Davidia involucrata HOM05D006784 ORTHO05D008508 1.5e-149 533.1 328 81.4
Actinidia01543 Actinidia chinensis HOM05D006784 ORTHO05D008508 4.1e-144 515.0 319 80.6
Rhsim12G0001900 Rhododendron simsii HOM05D006784 ORTHO05D008508 1.2e-140 503.4 336 76.5
GSVIVG01037159001 Vitis vinifera HOM05D006784 ORTHO05D008508 3.8e-137 491.9 329 73.9
DCAR_003507 Daucus carota HOM05D006784 ORTHO05D008508 2.4e-131 472.6 314 72.3
Oeu035045.1 Olea europaea HOM05D006784 ORTHO05D008508 4.0e-131 471.9 332 71.4
Thecc.08G168600 Theobroma cacao HOM05D006784 ORTHO05D008508 1.2e-130 470.3 322 73.0
Potri.013G095300 Populus trichocarpa HOM05D006784 ORTHO05D008508 2.6e-130 469.2 319 71.5
Atru.chr13.2579 Acer truncatum HOM05D006784 ORTHO05D008508 7.6e-130 467.6 327 70.9
TAR376G1107 Trochodendron aralioides HOM05D006784 ORTHO05D008508 1.7e-129 466.5 283 80.2
CANSAT11G0581 Cannabis sativa HOM05D006784 ORTHO05D008508 2.4e-128 462.6 330 70.9
RcHm_v2.0_Chr6g0249611 Rosa chinensis HOM05D006784 ORTHO05D008508 3.2e-128 462.2 328 70.7
QL09p001285 Quercus lobata HOM05D006784 ORTHO05D008508 7.1e-128 461.1 350 68.6
Sabra13G0081300 Salix brachista HOM05D006784 ORTHO05D008508 9.3e-128 460.7 336 68.8
Lalb_Chr15g0080091 Lupinus albus HOM05D006784 ORTHO05D008508 1.6e-127 459.9 301 71.8
Manes.02G202800 Manihot esculenta HOM05D006784 ORTHO05D008508 4.6e-127 458.4 329 69.3
Ciclev10021219m.g Citrus clementina HOM05D006784 ORTHO05D008508 1.7e-126 456.4 314 70.1
Nn5g27234 Nelumbo nucifera HOM05D006784 ORTHO05D008508 3.0e-126 455.7 328 69.8
FvH4_2g00320 Fragaria vesca HOM05D006784 ORTHO05D008508 3.3e-125 452.2 324 68.8
Gorai.009G262200 Gossypium raimondii HOM05D006784 ORTHO05D008508 4.3e-125 451.8 290 74.1
Sed0009601 Sechium edule HOM05D006784 ORTHO05D008508 7.3e-125 451.1 325 69.5
Cc10_g16080 Coffea canephora HOM05D006784 ORTHO05D008508 1.6e-124 449.9 295 73.9
Medtr3g006210 Medicago truncatula HOM05D006784 ORTHO05D008508 8.1e-124 447.6 295 71.2
TPR.G25500 Trifolium pratense HOM05D006784 ORTHO05D008508 1.8e-123 446.4 295 71.2
Sopen11g020490 Solanum pennellii HOM05D006784 ORTHO05D008508 2.4e-123 446.0 326 69.6
ClCG08G001730 Citrullus lanatus HOM05D006784 ORTHO05D008508 4.5e-122 441.8 322 68.9
Eucgr.F02928 Eucalyptus grandis HOM05D006784 ORTHO05D008508 3.2e-120 435.6 295 71.2
PSO761G0491 Papaver somniferum HOM05D006784 ORTHO05D008508 7.1e-120 434.5 327 65.7
MELO3C022124.2 Cucumis melo HOM05D006784 ORTHO05D008508 3.5e-119 432.2 336 65.8
CsaV3_5G039470 Cucumis sativus L. HOM05D006784 ORTHO05D008508 3.5e-119 432.2 330 66.4
Migut.C01398 Erythranthe guttata HOM05D006784 ORTHO05D008508 3.5e-119 432.2 305 69.8
ECA232G1810 Erigeron canadensis HOM05D006784 ORTHO05D008508 4.6e-119 431.8 304 68.1
Glyma.04G110300 Glycine max HOM05D006784 ORTHO05D008508 6.0e-119 431.4 295 69.5
arahy.Tifrunner.gnm1.ann1.9TUP5I Arachis hypogaea HOM05D006784 ORTHO05D008508 1.3e-118 430.3 305 68.5
MBI03_g07138_MAGBIO Magnolia biondii HOM05D006784 ORTHO05D008508 5.1e-118 428.3 327 65.7
PSO210G0863 Papaver somniferum HOM05D006784 ORTHO05D008508 6.7e-118 427.9 327 64.5
EL10Ac1g01284 Beta vulgaris HOM05D006784 ORTHO05D008508 1.5e-117 426.8 295 67.8
arahy.Tifrunner.gnm1.ann1.VA03RP Arachis hypogaea HOM05D006784 ORTHO05D008508 9.6e-117 424.1 299 68.2
HanXRQChr09g0266871 Helianthus annuus HOM05D006784 ORTHO05D008508 2.1e-116 422.9 300 67.7
Thhalv10019786m.g Eutrema salsugineum HOM05D006784 ORTHO05D008508 2.4e-115 419.5 311 65.9
CARHR064620 Cardamine hirsuta HOM05D006784 ORTHO05D008508 5.3e-115 418.3 310 66.1
Lj7A416T40 Lonicera japonica HOM05D006784 ORTHO05D008508 4.5e-114 415.2 286 72.0
Lsat_1_v5_gn_4_133060 Lactuca sativa HOM05D006784 ORTHO05D008508 5.8e-114 414.8 293 69.3
Aa31LG4G9210 Aethionema arabicum HOM05D006784 ORTHO05D008508 7.6e-114 414.5 311 65.3
FAN24G3159 Fragaria x ananassa HOM05D006784 ORTHO05D008508 2.2e-113 412.9 272 72.8
Glyma.06G323800 Glycine max HOM05D006784 ORTHO05D008508 6.4e-113 411.4 295 67.8
Sp5g26500 Schrenkiella parvula HOM05D006784 ORTHO05D008508 8.4e-113 411.0 310 64.2
Phvul.005G002500 Phaseolus vulgaris HOM05D006784 ORTHO05D008508 1.9e-112 409.8 306 64.4
Nitab4.5_0000079g0180 Nicotiana tabacum HOM05D006784 ORTHO05D008508 4.2e-112 408.7 372 58.3
Sc23g0000020 Simmondsia chinensis HOM05D006784 ORTHO05D008508 5.5e-112 408.3 286 67.1
CAN.G567.5 Capsicum annuum HOM05D006784 ORTHO05D008508 2.1e-111 406.4 268 73.5
AT1G71340 Arabidopsis thaliana HOM05D006784 ORTHO05D008508 6.0e-111 404.8 310 62.9
BraA07t31326Z Brassica rapa HOM05D006784 ORTHO05D008508 3.0e-110 402.5 327 61.5
Carub.0002s1820 Capsella rubella HOM05D006784 ORTHO05D008508 3.0e-110 402.5 310 63.2
VMungo1080G0261 Vigna mungo HOM05D001255 ORTHO05D001246 5.1e-110 401.7 324 60.2
AL2G31000 Arabidopsis lyrata HOM05D006784 ORTHO05D008508 6.7e-110 401.4 327 61.2
Hund26939 Selenicereus undatus HOM05D006784 ORTHO05D008508 6.7e-110 401.4 306 62.4
A07p37620 Brassica napus HOM05D006784 ORTHO05D008508 2.5e-109 399.4 320 61.6
vmacro00953 Vaccinium macrocarpon HOM05D006784 ORTHO05D008508 5.6e-109 398.3 319 66.8
BcaB03g14890 Brassica carinata HOM05D006784 ORTHO05D008508 9.6e-109 397.5 327 61.2
ATR1089G080 Amborella trichopoda HOM05D006784 ORTHO05D008508 3.1e-107 392.5 307 61.6
THA.LOC104809757 Tarenaya hassleriana HOM05D006784 ORTHO05D008508 3.4e-106 389.0 321 60.1
BolC6t39596H Brassica oleracea HOM05D006784 ORTHO05D008508 2.2e-105 386.3 294 64.6
BcaC08g46565 Brassica carinata HOM05D006784 ORTHO05D008508 4.2e-104 382.1 294 63.6
C06p45390 Brassica napus HOM05D006784 ORTHO05D008508 5.5e-104 381.7 320 60.3
Gohir.A05G248533 Gossypium hirsutum HOM05D006784 ORTHO05D008508 7.9e-103 377.9 242 73.6
AUR62038543 Chenopodium quinoa HOM05D006784 ORTHO05D008508 1.0e-102 377.5 328 60.7
Lj3g0009982 Lotus japonicus HOM05D006784 ORTHO05D008508 1.3e-102 377.1 321 57.9
TWI12G0477 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 1.3e-102 377.1 278 68.3
Duzib177G0427 Durio zibethinus HOM05D006784 ORTHO05D008508 2.3e-102 376.3 313 60.7
unitig_46.g17979 Utricularia gibba HOM05D006784 ORTHO05D008508 2.3e-102 376.3 322 58.7
AUR62013392 Chenopodium quinoa HOM05D006784 ORTHO05D008508 3.7e-100 369.0 328 60.1
HPP92_019449 Vanilla planifolia HOM05D006784 ORTHO05D008508 9.0e-99 364.4 287 60.3
Nitab4.5_0001489g0040 Nicotiana tabacum HOM05D006784 ORTHO05D008508 1.3e-97 360.5 318 61.3
SEGI_09486 Sequoiadendron giganteum HOM05D006784 ORTHO05D008508 1.9e-96 356.7 296 55.7
PGR119G1188 Punica granatum HOM05D006784 ORTHO05D008508 2.8e-92 342.8 339 53.7
CiPaw.03G012700 Carya illinoinensis HOM05D006784 ORTHO05D008508 2.9e-89 332.8 203 80.3
Aqoxy5G01860 Aquilegia oxysepala HOM05D006784 ORTHO05D008508 3.8e-81 305.8 205 70.2
Prupe.8G003500 Prunus persica HOM05D006784 ORTHO05D008508 1.6e-79 300.4 212 70.3
Solyc11g045040.2 Solanum lycopersicum HOM05D006784 ORTHO05D008508 4.7e-79 298.9 206 71.8
SGA_v2.0_scaffold118G32637 Striga asiatica HOM05D006784 ORTHO05D008508 4.7e-79 298.9 354 50.3
Ca_13985_v3 Cicer arietinum L. HOM05D006784 ORTHO05D008508 2.2e-76 290.0 205 66.3
Psat5g232280 Pisum sativum HOM05D006784 ORTHO05D008508 2.8e-76 289.7 210 67.1
Cpa.g.sc142.7 Carica papaya HOM05D006784 ORTHO05D008508 8.2e-76 288.1 270 58.5
Mapoly0041s0058 Marchantia polymorpha HOM05D006784 ORTHO05D008508 1.2e-74 284.3 328 43.6
FAN19G1248 Fragaria x ananassa HOM05D006784 ORTHO05D008508 6.5e-73 278.5 280 55.0
CDE08G1443 Ceratophyllum demersum HOM05D006784 ORTHO05D008508 4.8e-68 262.3 242 56.6
Gohir.D05G250801 Gossypium hirsutum HOM05D006784 ORTHO05D008508 2.0e-61 240.4 166 69.9
TWI12G0001 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 1.6e-58 230.7 291 46.4
AagrBONN_evm.TU.Sc2ySwM_344.2721 Anthoceros agrestis HOM05D006784 ORTHO05D008508 1.7e-57 227.3 289 42.2
Ah.05g170450 Amaranthus hybridus HOM05D006784 ORTHO05D008508 9.5e-56 221.5 282 46.1
Haze_14004 Corylus avellana HOM05D006784 ORTHO05D008508 8.0e-55 218.4 319 43.9
COL.COLO4_25079 Corchorus olitorius HOM05D006784 ORTHO05D008508 1.2e-50 204.5 123 75.6
Zm00001eb167850 Zea mays HOM05D006784 ORTHO05D008508 3.8e-49 199.5 211 47.9
Peaxi162Scf00078g01023 Petunia axillaris HOM05D006784 ORTHO05D008508 1.3e-44 184.5 150 62.7
HPP92_019452 Vanilla planifolia HOM05D006784 ORTHO05D008508 8.6e-41 171.8 126 62.7
Peaxi162Scf00078g01017 Petunia axillaris HOM05D006784 ORTHO05D008508 4.3e-40 169.5 97 82.5
Hma1.2p1_0238F.1_g099740 Hydrangea macrophylla HOM05D006784 ORTHO05D008508 2.8e-39 166.8 110 76.4
Cre02.g115750 Chlamydomonas reinhardtii HOM05D006784 ORTHO05D008508 8.0e-39 165.2 288 33.3
FAN20G3191 Fragaria x ananassa HOM05D006784 ORTHO05D008508 9.8e-37 158.3 120 66.7
PGSC0003DMG402006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 4.9e-36 156.0 92 80.4
PGSC0003DMG401006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 3.9e-33 146.4 121 62.8
FvH4_2g04920 Fragaria vesca HOM05D006784 ORTHO05D008508 4.9e-28 129.4 177 45.2
Os11g0236000 Oryza sativa ssp. japonica HOM05D006784 ORTHO05D008508 8.3e-28 128.6 80 65.0
MD05G1006200 Malus domestica HOM05D006784 ORTHO05D008508 2.4e-27 127.1 80 73.8
Gorai.005G166200 Gossypium raimondii HOM05D006784 ORTHO05D008508 6.0e-26 122.5 85 70.6
Gohir.D08G237350 Gossypium hirsutum HOM05D006784 ORTHO05D008508 1.7e-25 120.9 85 69.4
CBR_g18896 Chara braunii HOM05D006784 ORTHO05D008508 8.6e-25 118.6 162 34.6
MCO03G046 Micromonas commoda HOM05D006784 ORTHO05D008508 1.6e-23 114.4 281 27.4
QL09p001297 Quercus lobata HOM05D006784 ORTHO05D008508 1.4e-19 101.3 91 57.1
Atru.chr7.394 Acer truncatum HOM05D006784 ORTHO05D008508 1.6e-18 97.8 66 66.7
FAN20G2921 Fragaria x ananassa HOM05D006784 ORTHO05D008508 4.9e-12 76.3 151 36.4
FAN20G2925 Fragaria x ananassa HOM05D006784 ORTHO05D008508 4.9e-12 76.3 151 36.4
FAN24G0543 Fragaria x ananassa HOM05D006784 ORTHO05D008508 2.4e-11 73.9 151 35.8
FvH4_2g01030 Fragaria vesca HOM05D006784 ORTHO05D005195 5.4e-11 72.8 135 36.3
Gorai.004G102800 Gossypium raimondii HOM05D006784 ORTHO05D008508 5.4e-11 72.8 48 72.9
FAN20G2451 Fragaria x ananassa HOM05D009889 ORTHO05D003215 3.3e-08 63.5 43 72.1
MBI14_g30460_MAGBIO Magnolia biondii HOM05D006784 ORTHO05D014525 3.6e-07 60.1 38 78.9


User provided reference genes

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