Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003570 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D003527 1.7e-47 192.2 89 100.0
CSS0044754 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D003527 1.7e-47 192.2 89 100.0
CSS0000240 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D003527 7.5e-19 97.1 64 78.1
Dinv12396 Davidia involucrata HOM05D001765 ORTHO05D003527 2.4e-17 92.0 72 66.7
vmacro11471 Vaccinium macrocarpon HOM05D001765 ORTHO05D003527 5.4e-17 90.9 69 68.1
Hma1.2p1_0436F.1_g152890 Hydrangea macrophylla HOM05D001765 ORTHO05D003527 1.3e-15 86.3 72 62.5
Actinidia22239 Actinidia chinensis HOM05D001765 ORTHO05D003527 1.5e-14 82.8 76 59.2
Cc08_g05160 Coffea canephora HOM05D001765 ORTHO05D003527 2.8e-13 78.6 69 60.9
TAR375G0793 Trochodendron aralioides HOM05D001765 ORTHO05D003527 4.7e-13 77.8 61 62.3
Aqoxy5G04386 Aquilegia oxysepala HOM05D001765 ORTHO05D003527 1.8e-12 75.9 43 79.1
CANSAT21G2548 Cannabis sativa HOM05D001765 ORTHO05D003527 3.0e-12 75.1 75 53.3
Oeu063650.1 Olea europaea HOM05D007843 ORTHO05D003639 5.2e-12 74.3 64 56.2
vmacro08521 Vaccinium macrocarpon HOM05D001765 ORTHO05D003527 5.2e-12 74.3 63 60.3
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 6.8e-12 73.9 58 63.8
DCAR_019220 Daucus carota HOM05D001765 ORTHO05D003527 1.2e-11 73.2 66 60.6
PGR031G0625 Punica granatum HOM05D001765 ORTHO05D003527 1.2e-11 73.2 43 76.7
Nn1g00491 Nelumbo nucifera HOM05D001765 ORTHO05D003527 2.0e-11 72.4 59 62.7
Nitab4.5_0000450g0050 Nicotiana tabacum HOM05D001765 ORTHO05D003527 2.6e-11 72.0 66 56.1
CDE09G1369 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 3.4e-11 71.6 40 75.0
Haze_03592 Corylus avellana HOM05D001765 ORTHO05D003527 3.4e-11 71.6 40 82.5
Ciclev10022684m.g Citrus clementina HOM05D001765 ORTHO05D003527 5.7e-11 70.9 43 76.7
Sabra16G0306500 Salix brachista HOM05D001765 ORTHO05D003527 5.7e-11 70.9 73 52.1
Potri.001G453400 Populus trichocarpa HOM05D001765 ORTHO05D003527 9.8e-11 70.1 77 50.6
Nitab4.5_0006317g0030 Nicotiana tabacum HOM05D001765 ORTHO05D003527 1.3e-10 69.7 67 56.7
CiPaw.11G106600 Carya illinoinensis HOM05D001765 ORTHO05D003527 1.7e-10 69.3 76 51.3
Prupe.5G136900 Prunus persica HOM05D001765 ORTHO05D003527 1.7e-10 69.3 79 53.2
TWI60G1724 Tripterygium wilfordii HOM05D001765 ORTHO05D003527 1.7e-10 69.3 77 51.9
Lj2A148G64 Lonicera japonica HOM05D001765 ORTHO05D003527 2.2e-10 68.9 42 76.2
Manes.01G000550 Manihot esculenta HOM05D001765 ORTHO05D003527 2.8e-10 68.6 67 55.2
CDE11G1166 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 3.7e-10 68.2 40 70.0
Peaxi162Scf00779g00211 Petunia axillaris HOM05D001765 ORTHO05D003527 3.7e-10 68.2 40 77.5
ClCG01G001250 Citrullus lanatus HOM05D001765 ORTHO05D003527 4.9e-10 67.8 72 50.0
MELO3C005810.2 Cucumis melo HOM05D001765 ORTHO05D003527 1.1e-09 66.6 43 69.8
Duzib084G1229 Durio zibethinus HOM05D001765 ORTHO05D003527 1.1e-09 66.6 43 74.4
SGA_v2.0_scaffold20G09260 Striga asiatica HOM05D001765 ORTHO05D003527 1.4e-09 66.2 43 67.4
Thecc.03G214000 Theobroma cacao HOM05D001765 ORTHO05D003527 1.4e-09 66.2 43 72.1
Cpa.g.sc37.116 Carica papaya HOM05D001765 ORTHO05D003527 1.8e-09 65.9 43 69.8
CsaV3_5G001370 Cucumis sativus L. HOM05D001765 ORTHO05D003527 1.8e-09 65.9 43 65.1
unitig_52.g17201 Utricularia gibba HOM05D000742 ORTHO05D000924 1.8e-09 65.9 43 65.1
GSVIVG01019710001 Vitis vinifera HOM05D001765 ORTHO05D003527 1.8e-09 65.9 72 54.2
QL93p2012_0027 Quercus lobata HOM05D001765 ORTHO05D003527 7.0e-09 63.9 43 65.1
Eucgr.D02536 Eucalyptus grandis HOM05D001765 ORTHO05D003527 9.2e-09 63.5 43 67.4
PSO782G3477 Papaver somniferum HOM05D001765 ORTHO05D003527 9.2e-09 63.5 40 67.5
Migut.E00773 Erythranthe guttata HOM05D001765 ORTHO05D003527 1.2e-08 63.2 43 65.1
PSO063G6238 Papaver somniferum HOM05D001765 ORTHO05D003527 1.6e-08 62.8 63 52.4
RcHm_v2.0_Chr7g0188041 Rosa chinensis HOM05D001765 ORTHO05D003527 1.6e-08 62.8 43 65.1
SalBow1G2231 Salvia bowleyana HOM05D001765 ORTHO05D003527 3.5e-08 61.6 70 45.7
Zm00001eb210620 Zea mays HOM05D001765 ORTHO05D003527 3.5e-08 61.6 43 60.5
Duzib068G1454 Durio zibethinus HOM05D001765 ORTHO05D003527 4.5e-08 61.2 64 50.0
Atru.chr9.1818 Acer truncatum HOM05D001765 ORTHO05D003527 5.9e-08 60.8 40 67.5
MD06G1126400 Malus domestica HOM05D001765 ORTHO05D003527 5.9e-08 60.8 43 65.1
FAN04G1154 Fragaria x ananassa HOM05D000258 ORTHO05D000153 7.8e-08 60.5 66 50.0
FAN13G1501 Fragaria x ananassa HOM05D000258 ORTHO05D000153 7.8e-08 60.5 47 59.6
Os03g0852500 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D003527 7.8e-08 60.5 43 60.5
QL93p2012_0001 Quercus lobata HOM05D001765 ORTHO05D003527 7.8e-08 60.5 40 65.0
Sed0027749 Sechium edule HOM05D001765 ORTHO05D003527 7.8e-08 60.5 43 55.8
FvH4_5g10193 Fragaria vesca HOM05D001765 ORTHO05D003527 1.0e-07 60.1 66 50.0
THA.LOC104823621 Tarenaya hassleriana HOM05D001765 ORTHO05D003527 1.7e-07 59.3 43 62.8
MSTRG.2000 Avicennia marina HOM05D001765 ORTHO05D003527 2.3e-07 58.9 43 60.5
CARHR067050 Cardamine hirsuta HOM05D001765 ORTHO05D003527 2.9e-07 58.5 85 41.2
C06p48050 Brassica napus HOM05D001765 ORTHO05D003527 3.9e-07 58.2 86 40.7
A07p39780 Brassica napus HOM05D001765 ORTHO05D003527 5.0e-07 57.8 43 60.5
BolC6t39840H Brassica oleracea HOM05D001765 ORTHO05D003527 5.0e-07 57.8 43 60.5
BraA07t31525Z Brassica rapa HOM05D001765 ORTHO05D003527 5.0e-07 57.8 43 60.5
Carub.0002s2071 Capsella rubella HOM05D001765 ORTHO05D003527 5.0e-07 57.8 43 60.5
COL.COLO4_10860 Corchorus olitorius HOM05D001765 ORTHO05D003527 5.0e-07 57.8 43 65.1
Gohir.A12G243600 Gossypium hirsutum HOM05D001765 ORTHO05D003527 6.6e-07 57.4 76 46.1
Gohir.D12G244600 Gossypium hirsutum HOM05D001765 ORTHO05D003527 6.6e-07 57.4 76 46.1
Gorai.008G262200 Gossypium raimondii HOM05D001765 ORTHO05D003527 6.6e-07 57.4 76 46.1
BraA07t30598Z Brassica rapa HOM05D001765 ORTHO05D003527 1.1e-06 56.6 43 60.5
C06p33710 Brassica napus HOM05D001765 ORTHO05D003527 1.5e-06 56.2 47 55.3
Sp5g29140 Schrenkiella parvula HOM05D001765 ORTHO05D003527 1.9e-06 55.8 43 58.1
ATR0579G141 Amborella trichopoda HOM05D001765 ORTHO05D003527 2.5e-06 55.5 43 58.1
Thhalv10019277m.g Eutrema salsugineum HOM05D001765 ORTHO05D003527 2.5e-06 55.5 43 60.5
Sed0026089 Sechium edule HOM05D001765 ORTHO05D003527 2.5e-06 55.5 43 58.1
AT1G73940 Arabidopsis thaliana HOM05D001765 ORTHO05D003527 3.3e-06 55.1 43 58.1
BolC6t38486H Brassica oleracea HOM05D001765 ORTHO05D003527 3.3e-06 55.1 43 58.1
AL2G33770 Arabidopsis lyrata HOM05D001765 ORTHO05D003527 4.3e-06 54.7 81 42.0
Aa31LG4G4230 Aethionema arabicum HOM05D001765 ORTHO05D003527 5.6e-06 54.3 83 39.8
EL10Ac9g22070 Beta vulgaris HOM05D001765 ORTHO05D003527 7.3e-06 53.9 43 53.5


User provided reference genes

Program Settings