Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003558 Camellia sinensis var. sinensis HOM05D004574 ORTHO05D005612 3.4e-215 751.5 417 100.0
CSS0049430 Camellia sinensis var. sinensis HOM05D004574 ORTHO05D005612 1.0e-211 740.0 412 99.8
Dinv42911 Davidia involucrata HOM05D004574 ORTHO05D005612 1.0e-126 457.6 420 68.8
Dinv43190 Davidia involucrata HOM05D004574 ORTHO05D005612 1.0e-126 457.6 420 68.8
CSS0028433 Camellia sinensis var. sinensis HOM05D004574 ORTHO05D005612 5.6e-117 425.2 423 64.3
Actinidia04251 Actinidia chinensis HOM05D004574 ORTHO05D005612 2.1e-111 406.8 419 59.7
Actinidia21909 Actinidia chinensis HOM05D004574 ORTHO05D005612 6.7e-110 401.7 418 63.4
vmacro21880 Vaccinium macrocarpon HOM05D004574 ORTHO05D005612 1.3e-108 397.5 423 62.4
Hma1.2p1_0182F.1_g080580 Hydrangea macrophylla HOM05D004574 ORTHO05D005612 1.3e-92 344.4 375 60.8
Oeu040778.1 Olea europaea HOM05D004574 ORTHO05D005612 5.7e-85 318.9 431 49.4
CiPaw.16G117400 Carya illinoinensis HOM05D004574 ORTHO05D005612 6.1e-79 298.9 407 51.6
Haze_19313 Corylus avellana HOM05D004574 ORTHO05D005612 6.1e-79 298.9 408 52.7
TWI34G0786 Tripterygium wilfordii HOM05D004574 ORTHO05D005612 6.1e-79 298.9 406 48.5
Manes.14G139500 Manihot esculenta HOM05D004574 ORTHO05D005612 5.1e-78 295.8 400 52.0
Lj9A709T23 Lonicera japonica HOM05D004574 ORTHO05D005612 9.7e-77 291.6 326 58.3
Prupe.7G253700 Prunus persica HOM05D004574 ORTHO05D005612 8.2e-76 288.5 399 51.9
Sabra18G0096500 Salix brachista HOM05D004574 ORTHO05D005612 6.9e-75 285.4 402 52.7
GSVIVG01012900001 Vitis vinifera HOM05D004574 ORTHO05D005612 1.5e-74 284.3 440 46.6
Cfa020884 Carpinus fangiana HOM05D004574 ORTHO05D005612 5.9e-74 282.3 409 49.9
Duzib168G1873 Durio zibethinus HOM05D004574 ORTHO05D005612 7.7e-74 282.0 415 47.2
Cc06_g07390 Coffea canephora HOM05D004574 ORTHO05D005612 3.8e-73 279.6 437 49.9
Migut.J01279 Erythranthe guttata HOM05D004574 ORTHO05D005612 6.5e-73 278.9 436 44.5
Ciclev10007567m.g Citrus clementina HOM05D004574 ORTHO05D005612 8.5e-73 278.5 408 48.8
MSTRG.19628 Avicennia marina HOM05D004574 ORTHO05D005612 3.2e-72 276.6 428 44.4
Potri.018G113600 Populus trichocarpa HOM05D004574 ORTHO05D005612 1.2e-71 274.6 408 48.0
CAN.G518.8 Capsicum annuum HOM05D004574 ORTHO05D005612 1.6e-71 274.2 445 44.9
MD15G1158500 Malus domestica HOM05D004574 ORTHO05D005612 1.4e-70 271.2 400 47.0
Atru.chr7.229_Atru.chr7.228 Acer truncatum HOM05D004574 ORTHO05D005612 6.7e-70 268.9 416 44.0
Duzib187G1624 Durio zibethinus HOM05D004574 ORTHO05D005612 1.5e-69 267.7 403 45.7
Hma1.2p1_2402F.1_g321400 Hydrangea macrophylla HOM05D004574 ORTHO05D005612 2.0e-69 267.3 356 48.9
Potri.006G189501 Populus trichocarpa HOM05D004574 ORTHO05D005612 9.7e-69 265.0 418 45.5
FvH4_1g01590 Fragaria vesca HOM05D004574 ORTHO05D005612 1.7e-68 264.2 406 46.6
MD02G1012700 Malus domestica HOM05D004574 ORTHO05D005612 4.8e-68 262.7 400 47.2
Gohir.A06G049000 Gossypium hirsutum HOM05D004574 ORTHO05D005612 6.3e-68 262.3 410 48.0
QL02p091406 Quercus lobata HOM05D004574 ORTHO05D005612 8.2e-68 261.9 407 48.9
Nitab4.5_0001151g0100 Nicotiana tabacum HOM05D004574 ORTHO05D005612 1.8e-67 260.8 447 46.3
TAR625G0795 Trochodendron aralioides HOM05D004574 ORTHO05D005612 4.1e-67 259.6 392 46.9
RcHm_v2.0_Chr2g0086551 Rosa chinensis HOM05D004574 ORTHO05D005612 1.2e-66 258.1 399 46.1
Thecc.09G142400 Theobroma cacao HOM05D004574 ORTHO05D005612 1.2e-66 258.1 422 44.3
Gohir.D06G048700 Gossypium hirsutum HOM05D004574 ORTHO05D005612 3.5e-66 256.5 414 46.6
CANSAT11G2415 Cannabis sativa HOM05D004574 ORTHO05D005612 5.9e-66 255.8 396 49.7
FAN28G2389 Fragaria x ananassa HOM05D004574 ORTHO05D005612 7.7e-66 255.4 406 45.8
Glyma.13G156900 Glycine max HOM05D004574 ORTHO05D005612 1.7e-65 254.2 418 44.5
Nitab4.5_0001671g0130 Nicotiana tabacum HOM05D004574 ORTHO05D005612 1.7e-65 254.2 446 43.9
COL.COLO4_24086 Corchorus olitorius HOM05D004574 ORTHO05D005612 2.2e-65 253.8 371 47.4
FAN26G2227 Fragaria x ananassa HOM05D004574 ORTHO05D005612 3.8e-65 253.1 401 46.1
Medtr4g116570 Medicago truncatula HOM05D004574 ORTHO05D005612 1.5e-64 251.1 405 44.4
Lalb_Chr12g0198521 Lupinus albus HOM05D004574 ORTHO05D005612 9.4e-64 248.4 412 46.8
Sabra06G0145700 Salix brachista HOM05D004574 ORTHO05D005612 1.6e-63 247.7 380 46.1
Peaxi162Scf00347g00125 Petunia axillaris HOM05D004574 ORTHO05D005612 2.7e-63 246.9 440 45.2
Lj4g0023014 Lotus japonicus HOM05D004574 ORTHO05D005612 3.6e-63 246.5 408 42.2
Sopen07g003110 Solanum pennellii HOM05D004574 ORTHO05D005612 1.0e-62 245.0 448 42.0
Gorai.010G054900 Gossypium raimondii HOM05D004574 ORTHO05D005612 1.4e-62 244.6 422 44.5
SGA_v2.0_scaffold229G43349 Striga asiatica HOM05D004574 ORTHO05D005612 2.3e-62 243.8 430 45.6
FAN19G2203 Fragaria x ananassa HOM05D004574 ORTHO05D005612 4.4e-61 239.6 447 41.8
PGR102G2914 Punica granatum HOM05D004574 ORTHO05D005612 1.7e-60 237.7 410 46.3
Cpa.g.sc46.91 Carica papaya HOM05D004574 ORTHO05D005612 2.8e-60 236.9 420 43.1
Solyc07g007040.4 Solanum lycopersicum HOM05D004574 ORTHO05D005612 6.3e-60 235.7 448 43.3
DCAR_017762 Daucus carota HOM05D004574 ORTHO05D005612 3.1e-59 233.4 325 52.6
TPR.G15786 Trifolium pratense HOM05D004574 ORTHO05D005612 4.1e-59 233.0 405 46.2
Nn2g12259 Nelumbo nucifera HOM05D004574 ORTHO05D005612 2.9e-57 226.9 426 40.1
THA.LOC104815398 Tarenaya hassleriana HOM05D004574 ORTHO05D005612 6.5e-57 225.7 415 41.4
Glyma.17G104500 Glycine max HOM05D004574 ORTHO05D005612 9.4e-56 221.9 313 47.0
Sed0008757 Sechium edule HOM05D004574 ORTHO05D005612 1.2e-55 221.5 423 40.4
Phvul.003G175300 Phaseolus vulgaris HOM05D004574 ORTHO05D005612 1.6e-55 221.1 405 43.2
Lalb_Chr07g0179541 Lupinus albus HOM05D004574 ORTHO05D005612 4.7e-55 219.5 412 40.5
VMungo1215G1939 Vigna mungo HOM05D004574 ORTHO05D005612 6.1e-55 219.2 398 42.5
Eucgr.C04065 Eucalyptus grandis HOM05D004574 ORTHO05D005612 1.5e-53 214.5 402 43.3
AT3G09850 Arabidopsis thaliana HOM05D004574 ORTHO05D005612 2.0e-53 214.2 418 40.9
ClCG06G012070 Citrullus lanatus HOM05D004574 ORTHO05D005612 3.4e-53 213.4 424 39.2
arahy.Tifrunner.gnm1.ann1.J06XH2 Arachis hypogaea HOM05D004574 ORTHO05D005612 4.4e-53 213.0 410 42.9
ECA236G2347 Erigeron canadensis HOM05D004574 ORTHO05D005612 4.4e-53 213.0 465 37.2
Lsat_1_v5_gn_8_60221 Lactuca sativa HOM05D004574 ORTHO05D005612 7.5e-53 212.2 434 43.1
arahy.Tifrunner.gnm1.ann1.YXSX85 Arachis hypogaea HOM05D004574 ORTHO05D005612 9.8e-53 211.8 428 40.2
FAN23G1466 Fragaria x ananassa HOM05D004574 ORTHO05D005612 9.8e-53 211.8 401 41.9
Hund14397 Selenicereus undatus HOM05D004574 ORTHO05D005612 1.4e-51 208.0 454 41.9
Sc18g0000060 Simmondsia chinensis HOM05D004574 ORTHO05D005612 5.4e-51 206.1 413 39.5
MELO3C010260.2 Cucumis melo HOM05D004574 ORTHO05D005612 9.1e-51 205.3 426 38.5
Nn8g39728 Nelumbo nucifera HOM05D004574 ORTHO05D005612 4.5e-50 203.0 421 38.5
AL3G21080 Arabidopsis lyrata HOM05D004574 ORTHO05D005612 7.7e-50 202.2 399 42.1
Aqoxy7G03519 Aquilegia oxysepala HOM05D004574 ORTHO05D005612 1.0e-49 201.8 408 43.6
Psat4g033240 Pisum sativum HOM05D004574 ORTHO05D005612 1.7e-49 201.1 303 45.9
CARHR084360 Cardamine hirsuta HOM05D004574 ORTHO05D005612 1.5e-48 198.0 404 42.1
AUR62011249 Chenopodium quinoa HOM05D004574 ORTHO05D005612 1.6e-47 194.5 447 40.3
MBI14_g15649_MAGBIO Magnolia biondii HOM05D004574 ORTHO05D005612 8.0e-47 192.2 415 43.4
Carub.0003s0894 Capsella rubella HOM05D004574 ORTHO05D005612 1.0e-46 191.8 399 41.6
Sed0022583 Sechium edule HOM05D004574 ORTHO05D005612 2.3e-46 190.7 427 36.5
AUR62041455 Chenopodium quinoa HOM05D004574 ORTHO05D005612 1.3e-44 184.9 428 35.5
Ca_21611_v3 Cicer arietinum L. HOM05D004574 ORTHO05D005612 3.7e-44 183.3 377 39.8
Thhalv10020109m.g Eutrema salsugineum HOM05D004574 ORTHO05D005612 1.4e-43 181.4 411 40.9
CsaV3_1G028540 Cucumis sativus L. HOM05D004574 ORTHO05D005612 1.8e-43 181.0 433 37.6
Sp3g08180 Schrenkiella parvula HOM05D004574 ORTHO05D005612 1.6e-42 177.9 407 40.5
Ah.09g223910 Amaranthus hybridus HOM05D004574 ORTHO05D005612 2.0e-42 177.6 484 35.7
HanXRQChr05g0139651 Helianthus annuus HOM05D004574 ORTHO05D005612 3.5e-42 176.8 293 43.7
EL10Ac8g18810 Beta vulgaris HOM05D004574 ORTHO05D005612 1.3e-41 174.9 465 37.8
ECA234G1322 Erigeron canadensis HOM05D004574 ORTHO05D005612 6.6e-41 172.6 420 40.0
Aa31LG3G2320 Aethionema arabicum HOM05D004574 ORTHO05D005612 1.6e-39 167.9 417 40.5
Eucgr.L01317 Eucalyptus grandis HOM05D004574 ORTHO05D005612 6.1e-39 166.0 313 44.4
PSO170G6219 Papaver somniferum HOM05D004574 ORTHO05D005612 6.8e-38 162.5 463 34.6
DCAR_014931 Daucus carota HOM05D004574 ORTHO05D005612 2.9e-36 157.1 311 47.9
Lsat_1_v5_gn_5_90461 Lactuca sativa HOM05D004574 ORTHO05D005612 2.9e-36 157.1 442 36.9
BcaC05g29496 Brassica carinata HOM05D004574 ORTHO05D005612 7.0e-35 152.5 405 38.3
C05p58250 Brassica napus HOM05D004574 ORTHO05D005612 7.0e-35 152.5 405 38.3
HanXRQChr12g0357011 Helianthus annuus HOM05D004574 ORTHO05D005612 1.2e-34 151.8 394 39.1
BolC5t34479H Brassica oleracea HOM05D004574 ORTHO05D005612 2.0e-34 151.0 403 39.5
BraA05t22709Z Brassica rapa HOM05D004574 ORTHO05D005612 2.5e-32 144.1 404 38.1
A05p39200 Brassica napus HOM05D004574 ORTHO05D005612 1.1e-30 138.7 403 37.0
BcaC05g29707 Brassica carinata HOM05D004574 ORTHO05D005612 1.4e-27 128.3 419 32.0
Eucgr.L02934 Eucalyptus grandis HOM05D004574 ORTHO05D005612 1.4e-27 128.3 313 38.7
SHI03239 Sapria himalayana HOM05D004574 ORTHO05D005612 4.3e-24 116.7 311 31.8
Actinidia38356 Actinidia chinensis HOM05D004574 ORTHO05D005612 1.2e-23 115.2 94 70.2
Phvul.003G175200 Phaseolus vulgaris HOM05D004574 ORTHO05D005612 1.1e-22 112.1 221 34.8
CDE05G2637 Ceratophyllum demersum HOM05D004574 ORTHO05D005612 2.6e-21 107.5 365 35.6
ATR0629G131 Amborella trichopoda HOM05D004574 ORTHO05D005612 1.8e-14 84.7 487 30.2
HPP92_005340 Vanilla planifolia HOM05D004574 ORTHO05D005612 1.2e-13 82.0 398 28.1
Os08g0288500 Oryza sativa ssp. japonica HOM05D004574 ORTHO05D005612 7.8e-10 69.3 294 32.3
BolC1t05428H Brassica oleracea HOM05D004574 ORTHO05D005612 1.6e-07 61.6 111 42.3
VMungo0251G0925 Vigna mungo HOM05D005045 ORTHO05D005612 4.7e-07 60.1 127 32.3
Zm00001eb028250 Zea mays HOM05D004574 ORTHO05D005612 1.8e-06 58.2 450 23.8


User provided reference genes

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