Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 4.9e-210 734.2 363 100.0
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 2.4e-172 609.0 364 80.8
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 2.7e-168 595.5 363 84.6
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 1.8e-167 592.8 358 80.7
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 8.8e-167 590.5 364 79.9
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 2.0e-166 589.3 361 77.6
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 2.0e-166 589.3 363 78.5
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 4.4e-166 588.2 364 77.5
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 1.3e-165 586.6 361 77.0
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 3.1e-164 582.0 364 77.7
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 5.3e-164 581.3 364 76.9
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 5.3e-164 581.3 372 76.1
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 9.1e-164 580.5 363 76.9
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 2.0e-163 579.3 358 78.5
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 3.5e-163 578.6 420 69.3
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 4.5e-163 578.2 364 78.3
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 5.9e-163 577.8 372 76.3
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.7e-163 577.4 362 76.5
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 7.7e-163 577.4 364 76.6
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.0e-162 577.0 362 76.5
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 2.9e-162 575.5 364 76.1
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 2.9e-162 575.5 364 76.1
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 5.0e-162 574.7 363 76.3
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 8.5e-162 573.9 376 75.5
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 1.1e-161 573.5 363 76.3
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.2e-161 571.6 362 75.7
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 1.2e-160 570.1 361 75.1
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 1.2e-160 570.1 361 74.8
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 1.6e-160 569.7 362 76.2
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 2.1e-160 569.3 322 86.3
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 2.7e-160 568.9 363 75.8
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 2.7e-160 568.9 362 76.2
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 2.7e-160 568.9 361 75.9
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 3.6e-160 568.5 372 73.1
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 8.0e-160 567.4 362 75.7
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.0e-159 567.0 364 79.1
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 3.0e-159 565.5 361 74.2
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 6.7e-159 564.3 363 72.2
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 2.0e-158 562.8 361 75.6
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 4.4e-158 561.6 363 74.9
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 5.7e-158 561.2 364 73.9
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 7.5e-158 560.8 363 73.0
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 2.8e-157 558.9 363 72.5
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 2.8e-157 558.9 364 73.4
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 8.2e-157 557.4 369 73.4
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.8e-156 556.2 396 70.5
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 4.1e-156 555.1 362 73.5
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 4.1e-156 555.1 364 73.1
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 1.2e-155 553.5 393 71.2
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 3.5e-155 552.0 363 72.7
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 6.5e-154 547.7 365 75.3
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 6.5e-154 547.7 388 70.4
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 8.5e-154 547.4 367 73.3
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 3.2e-153 545.4 362 73.2
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.2e-153 545.4 388 70.1
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.2e-152 543.5 388 69.8
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 2.7e-152 542.3 361 71.7
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 4.7e-152 541.6 352 75.0
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 4.7e-152 541.6 352 75.0
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 4.7e-152 541.6 361 72.0
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 4.7e-152 541.6 363 73.8
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 8.0e-152 540.8 381 71.7
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 1.8e-151 539.7 362 70.7
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 6.8e-151 537.7 357 75.6
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 8.8e-151 537.3 362 70.7
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 8.8e-151 537.3 349 74.8
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 1.5e-150 536.6 363 71.6
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 2.0e-150 536.2 362 71.0
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 2.0e-150 536.2 365 71.5
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 2.6e-150 535.8 362 69.9
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 2.6e-150 535.8 397 69.5
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 2.6e-150 535.8 360 74.7
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 4.4e-150 535.0 362 70.4
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 5.7e-150 534.6 362 70.2
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 7.5e-150 534.3 360 70.3
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 9.8e-150 533.9 366 71.6
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 1.3e-149 533.5 362 71.3
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 2.2e-149 532.7 356 73.0
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 2.8e-149 532.3 361 70.1
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 3.7e-149 531.9 362 69.9
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 4.8e-149 531.6 362 69.9
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 8.3e-149 530.8 362 70.2
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 1.1e-148 530.4 362 69.6
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 9.1e-148 527.3 355 70.7
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 3.5e-147 525.4 349 73.1
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 5.9e-147 524.6 349 73.9
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 1.5e-145 520.0 364 69.8
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 1.9e-145 519.6 317 78.2
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 6.1e-144 514.6 355 69.0
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 2.6e-142 509.2 362 66.9
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 2.2e-141 506.1 297 81.5
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 4.9e-141 505.0 328 74.4
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.6e-139 500.0 363 69.1
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 1.3e-138 496.9 362 69.1
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 1.3e-138 496.9 362 69.1
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 1.3e-138 496.9 363 67.5
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 2.3e-138 496.1 365 68.5
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 3.6e-136 488.8 301 82.1
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 5.2e-135 485.0 332 74.1
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 1.5e-134 483.4 373 65.7
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 4.4e-134 481.9 364 66.5
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 9.8e-134 480.7 354 68.6
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 1.3e-133 480.3 354 65.8
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 1.1e-132 477.2 292 79.5
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 1.9e-129 466.5 358 64.8
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 9.5e-129 464.2 364 68.4
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 2.3e-127 459.5 363 66.4
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 5.2e-127 458.4 388 62.6
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 5.8e-126 454.9 297 74.7
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 1.1e-124 450.7 292 74.3
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 9.2e-124 447.6 364 66.8
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 3.5e-123 445.7 297 69.7
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 7.1e-116 421.4 286 72.7
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 2.7e-107 392.9 349 55.6
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 6.2e-104 381.7 287 62.7
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 1.8e-103 380.2 361 52.9
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 1.3e-101 374.0 319 55.8
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 2.7e-99 366.3 361 54.0
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 8.7e-98 361.3 338 53.3
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 2.5e-97 359.8 357 54.9
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 1.1e-95 354.4 335 49.9
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 1.1e-95 354.4 269 66.5
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 1.7e-93 347.1 367 51.5
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 2.8e-64 250.0 152 75.0
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 6.1e-59 232.3 327 38.5
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 1.3e-56 224.6 136 76.5
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 1.0e-42 178.3 344 32.6
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 1.4e-42 177.9 126 70.6
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.5e-37 159.1 137 57.7
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.1e-35 154.1 199 45.2
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 1.4e-34 151.4 337 32.3
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 2.0e-33 147.5 103 68.0
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 6.3e-32 142.5 116 62.9
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 2.4e-31 140.6 138 53.6
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.4e-31 140.6 87 75.9
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 5.4e-31 139.4 90 80.0
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.2e-30 138.3 83 78.3
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.3e-29 134.0 83 74.7
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.5e-28 131.3 83 73.5
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.2e-26 122.9 79 73.4
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.0e-25 120.9 78 73.1
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.6e-25 120.6 78 73.1
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.4e-25 120.2 79 72.2
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 4.4e-25 119.8 352 26.1
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.4e-25 119.8 78 71.8
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 9.8e-25 118.6 78 71.8
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.9e-24 116.3 79 69.6
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.9e-24 116.3 78 70.5
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.1e-23 113.2 70 74.3
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.0e-22 110.9 79 65.8
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 2.0e-22 110.9 110 51.8
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 4.5e-22 109.8 110 51.8
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.3e-21 107.5 101 57.4
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 5.6e-20 102.8 78 61.5
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 4.7e-19 99.8 104 56.7
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 1.5e-17 94.7 76 60.5
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 3.7e-16 90.1 60 71.7
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.9e-15 87.8 51 80.4
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 4.6e-14 83.2 67 67.2
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 7.3e-12 75.9 45 77.8
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 2.8e-11 73.9 52 65.4
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.6e-11 73.6 86 46.5
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 2.3e-10 70.9 43 74.4
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.8e-10 69.3 43 76.7
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 9.8e-09 65.5 42 69.0
Cc10_g11800 Coffea canephora HOM05D006912 ORTHO05D008686 8.3e-08 62.4 43 65.1
Aa31LG5G23020 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.4e-07 61.6 46 63.0
Cc09_g06650 Coffea canephora HOM05D004259 ORTHO05D005014 3.2e-07 60.5 42 61.9
Gohir.D01G066700 Gossypium hirsutum HOM05D000706 ORTHO05D013538 4.1e-07 60.1 49 55.1
Gohir.D01G081300 Gossypium hirsutum HOM05D000706 ORTHO05D013538 4.1e-07 60.1 37 67.6
Gohir.D09G037400 Gossypium hirsutum HOM05D000706 ORTHO05D013538 9.2e-07 58.9 37 64.9
Gorai.007G356500 Gossypium raimondii HOM05D000706 ORTHO05D013538 9.2e-07 58.9 49 55.1
Gohir.D06G127100 Gossypium hirsutum HOM05D000706 ORTHO05D013538 1.2e-06 58.5 37 64.9
Gohir.D13G142000 Gossypium hirsutum HOM05D000706 ORTHO05D013538 1.2e-06 58.5 49 55.1
Gorai.010G148400 Gossypium raimondii HOM05D000706 ORTHO05D013538 1.2e-06 58.5 37 64.9
Gohir.D03G122500 Gossypium hirsutum HOM05D000706 ORTHO05D013538 1.6e-06 58.2 37 64.9
Gohir.D09G143401 Gossypium hirsutum HOM05D000706 ORTHO05D013538 1.6e-06 58.2 49 55.1
Gohir.D06G138051 Gossypium hirsutum HOM05D000706 ORTHO05D013538 3.5e-06 57.0 37 64.9


User provided reference genes

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