Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003505 Camellia sinensis var. sinensis HOM05D003668 ORTHO05D004242 1.9e-206 722.2 350 100.0
CSS0008273 Camellia sinensis var. sinensis HOM05D003668 ORTHO05D004242 2.7e-197 691.8 346 98.0
Dinv16191 Davidia involucrata HOM05D003668 ORTHO05D004242 3.7e-170 601.7 353 81.9
Dinv05883 Davidia involucrata HOM05D003668 ORTHO05D004242 3.6e-165 585.1 346 80.9
Actinidia14944 Actinidia chinensis HOM05D003668 ORTHO05D004242 4.4e-163 578.2 346 80.9
GSVIVG01011788001 Vitis vinifera HOM05D003668 ORTHO05D004242 5.3e-161 571.2 353 77.3
Hma1.2p1_0601F.1_g187240 Hydrangea macrophylla HOM05D003668 ORTHO05D004242 1.7e-159 566.2 355 77.5
Haze_11039 Corylus avellana HOM05D003668 ORTHO05D004242 5.0e-159 564.7 343 80.5
Thecc.02G278000 Theobroma cacao HOM05D003668 ORTHO05D004242 5.0e-159 564.7 353 76.8
Duzib268G0050 Durio zibethinus HOM05D003668 ORTHO05D004242 7.2e-158 560.8 346 77.2
CSS0021848 Camellia sinensis var. sinensis HOM05D003668 ORTHO05D004242 3.6e-157 558.5 347 79.8
Gohir.A03G123600 Gossypium hirsutum HOM05D003668 ORTHO05D004242 3.3e-155 552.0 353 75.6
RcHm_v2.0_Chr4g0440821 Rosa chinensis HOM05D003668 ORTHO05D004242 3.7e-154 548.5 343 77.3
TWI79G0359 Tripterygium wilfordii HOM05D003668 ORTHO05D004242 3.7e-154 548.5 349 74.8
CiPaw.05G247100 Carya illinoinensis HOM05D003668 ORTHO05D004242 6.3e-154 547.7 353 75.6
MD13G1028500 Malus domestica HOM05D003668 ORTHO05D004242 8.2e-154 547.4 336 78.0
TAR622G1157 Trochodendron aralioides HOM05D003668 ORTHO05D004242 1.1e-153 547.0 346 76.3
COL.COLO4_20446 Corchorus olitorius HOM05D003668 ORTHO05D004242 1.8e-153 546.2 346 75.1
Gohir.A05G309600 Gossypium hirsutum HOM05D003668 ORTHO05D004242 1.8e-153 546.2 354 72.9
Sabra10G0085600 Salix brachista HOM05D003668 ORTHO05D004242 1.8e-153 546.2 344 75.3
Potri.010G115700 Populus trichocarpa HOM05D003668 ORTHO05D004242 2.4e-153 545.8 343 75.8
Prupe.1G321800 Prunus persica HOM05D003668 ORTHO05D004242 4.1e-153 545.0 336 78.0
Cpa.g.sc65.109 Carica papaya HOM05D003668 ORTHO05D004242 9.1e-153 543.9 346 75.4
Duzib251G0842 Durio zibethinus HOM05D003668 ORTHO05D004242 1.6e-152 543.1 347 74.6
Gohir.D05G310500 Gossypium hirsutum HOM05D003668 ORTHO05D004242 2.0e-152 542.7 354 72.6
FAN07G1823 Fragaria x ananassa HOM05D003668 ORTHO05D004242 1.0e-151 540.4 343 76.7
FvH4_4g32120 Fragaria vesca HOM05D003668 ORTHO05D004242 1.3e-151 540.0 343 76.7
FAN12G3685 Fragaria x ananassa HOM05D003668 ORTHO05D004242 2.9e-151 538.9 343 76.4
Gohir.D02G146200 Gossypium hirsutum HOM05D003668 ORTHO05D004242 6.5e-151 537.7 347 75.2
Solyc04g007610.3 Solanum lycopersicum HOM05D003668 ORTHO05D004242 1.1e-150 537.0 343 75.2
Nitab4.5_0004692g0030 Nicotiana tabacum HOM05D003668 ORTHO05D004242 2.5e-150 535.8 343 73.8
Eucgr.B02887 Eucalyptus grandis HOM05D003668 ORTHO05D004242 3.2e-150 535.4 346 74.9
Gorai.005G163600 Gossypium raimondii HOM05D003668 ORTHO05D004242 3.2e-150 535.4 346 74.6
Lalb_Chr06g0165651 Lupinus albus HOM05D003668 ORTHO05D004242 5.5e-150 534.6 353 71.7
Cc11_g09050 Coffea canephora HOM05D003668 ORTHO05D004242 1.2e-149 533.5 353 73.9
Sc11g0004080 Simmondsia chinensis HOM05D003668 ORTHO05D004242 1.2e-149 533.5 348 74.7
Sopen04g002690 Solanum pennellii HOM05D003668 ORTHO05D004242 1.2e-149 533.5 343 74.6
Psat6g222240 Pisum sativum HOM05D003668 ORTHO05D004242 1.6e-149 533.1 344 72.4
CiPaw.06G013800 Carya illinoinensis HOM05D003668 ORTHO05D004242 2.7e-149 532.3 350 75.7
Lj6C749G7 Lonicera japonica HOM05D003668 ORTHO05D004242 2.7e-149 532.3 350 74.6
Atru.chr11.362 Acer truncatum HOM05D003668 ORTHO05D004242 6.1e-149 531.2 336 75.3
Glyma.20G124700 Glycine max HOM05D003668 ORTHO05D004242 1.0e-148 530.4 346 73.4
Nitab4.5_0000414g0090 Nicotiana tabacum HOM05D003668 ORTHO05D004242 1.0e-148 530.4 336 74.1
Peaxi162Scf00119g01535 Petunia axillaris HOM05D003668 ORTHO05D004242 1.0e-148 530.4 335 74.6
Gorai.009G331400 Gossypium raimondii HOM05D003668 ORTHO05D004242 2.3e-148 529.3 347 72.9
QL01p002314 Quercus lobata HOM05D003668 ORTHO05D004242 6.7e-148 527.7 346 75.7
TPR.G4938 Trifolium pratense HOM05D003668 ORTHO05D004242 6.7e-148 527.7 346 72.3
Phvul.007G035900 Phaseolus vulgaris HOM05D003668 ORTHO05D004242 8.8e-148 527.3 343 71.7
FAN22G1857 Fragaria x ananassa HOM05D003668 ORTHO05D004242 1.2e-147 526.9 336 76.5
TWI31G1185 Tripterygium wilfordii HOM05D003668 ORTHO05D004242 2.6e-147 525.8 347 74.4
CANSAT01G1684 Cannabis sativa HOM05D003668 ORTHO05D004242 3.3e-147 525.4 336 75.3
Nitab4.5_0004092g0020 Nicotiana tabacum HOM05D003668 ORTHO05D004242 4.4e-147 525.0 335 73.7
Lj3A875T61 Lonicera japonica HOM05D003668 ORTHO05D004242 7.5e-147 524.2 343 73.5
Medtr1g108590 Medicago truncatula HOM05D003668 ORTHO05D004242 7.5e-147 524.2 346 71.7
DCAR_030206 Daucus carota HOM05D003668 ORTHO05D004242 2.2e-146 522.7 336 74.7
PGR102G1044 Punica granatum HOM05D003668 ORTHO05D004242 3.7e-146 521.9 346 72.8
Glyma.10G265900 Glycine max HOM05D003668 ORTHO05D004242 4.8e-146 521.5 346 72.0
Potri.008G127300 Populus trichocarpa HOM05D003668 ORTHO05D004242 4.8e-146 521.5 346 73.4
Oeu004307.1 Olea europaea HOM05D003668 ORTHO05D004242 6.3e-146 521.2 346 72.5
PGSC0003DMG400005962 Solanum tuberosum HOM05D003668 ORTHO05D004242 1.4e-145 520.0 336 74.1
Lj5g0008039 Lotus japonicus HOM05D003668 ORTHO05D004242 1.8e-145 519.6 336 73.8
CAN.G359.7 Capsicum annuum HOM05D003668 ORTHO05D004242 3.1e-145 518.8 344 72.4
Manes.06G062100 Manihot esculenta HOM05D003668 ORTHO05D004242 4.1e-145 518.5 349 71.9
Sabra08G0096100 Salix brachista HOM05D003668 ORTHO05D004242 4.1e-145 518.5 346 72.8
Rhsim09G0101100 Rhododendron simsii HOM05D003668 ORTHO05D004242 9.1e-145 517.3 420 64.5
Nn3g18032 Nelumbo nucifera HOM05D003668 ORTHO05D004242 1.6e-144 516.5 340 70.6
VMungo0720G2186 Vigna mungo HOM05D003668 ORTHO05D004242 1.0e-143 513.8 336 72.9
CsaV3_5G034880 Cucumis sativus L. HOM05D003668 ORTHO05D004242 1.7e-143 513.1 341 73.6
vmacro10624 Vaccinium macrocarpon HOM05D003668 ORTHO05D004242 1.7e-143 513.1 411 65.2
Ca_11103_v3 Cicer arietinum L. HOM05D003668 ORTHO05D004242 2.9e-143 512.3 347 70.0
Peaxi162Scf00205g00617 Petunia axillaris HOM05D003668 ORTHO05D004242 2.9e-143 512.3 357 70.9
ECA246G0677 Erigeron canadensis HOM05D003668 ORTHO05D004242 8.5e-143 510.8 341 72.1
MELO3C012298.2 Cucumis melo HOM05D003668 ORTHO05D004242 9.4e-142 507.3 337 73.6
Nn4g24060 Nelumbo nucifera HOM05D003668 ORTHO05D004242 9.4e-142 507.3 336 71.4
arahy.Tifrunner.gnm1.ann1.V9FAYY Arachis hypogaea HOM05D003668 ORTHO05D004242 3.6e-141 505.4 346 69.1
Aqoxy3G00162 Aquilegia oxysepala HOM05D003668 ORTHO05D004242 8.0e-141 504.2 346 70.5
arahy.Tifrunner.gnm1.ann1.P86RCB Arachis hypogaea HOM05D003668 ORTHO05D004242 2.3e-140 502.7 346 68.8
Sed0001529 Sechium edule HOM05D003668 ORTHO05D004242 4.0e-140 501.9 341 70.4
HanXRQChr15g0477351 Helianthus annuus HOM05D003668 ORTHO05D004242 4.4e-139 498.4 341 70.1
Sabra10G0087300 Salix brachista HOM05D003668 ORTHO05D004242 4.4e-139 498.4 391 64.2
SalBow8G3356 Salvia bowleyana HOM05D003668 ORTHO05D004242 2.8e-138 495.7 339 68.7
Lalb_Chr02g0145561 Lupinus albus HOM05D003668 ORTHO05D004242 4.8e-138 495.0 347 68.9
CAN.G1693.10 Capsicum annuum HOM05D003668 ORTHO05D004242 1.4e-137 493.4 335 70.1
Nitab4.5_0001648g0080 Nicotiana tabacum HOM05D003668 ORTHO05D004242 1.2e-136 490.3 317 72.6
Manes.14G135800 Manihot esculenta HOM05D003668 ORTHO05D004242 2.0e-136 489.6 336 70.5
SGA_v2.0_scaffold50G18529 Striga asiatica HOM05D003668 ORTHO05D004242 2.7e-136 489.2 340 68.8
PSO017G0236 Papaver somniferum HOM05D003668 ORTHO05D004242 6.5e-135 484.6 350 67.1
Lsat_1_v5_gn_3_54180 Lactuca sativa HOM05D003668 ORTHO05D004242 1.9e-134 483.0 347 68.9
Oeu044332.1 Olea europaea HOM05D003668 ORTHO05D004242 4.2e-134 481.9 359 66.3
MSTRG.884 Avicennia marina HOM05D003668 ORTHO05D004242 2.1e-133 479.6 350 66.9
Migut.L00659 Erythranthe guttata HOM05D003668 ORTHO05D004242 1.4e-132 476.9 357 68.6
Sed0014721 Sechium edule HOM05D003668 ORTHO05D004242 1.8e-132 476.5 347 67.7
ATR0326G075 Amborella trichopoda HOM05D003668 ORTHO05D004242 7.5e-131 471.1 353 65.7
CARHR143800 Cardamine hirsuta HOM05D003668 ORTHO05D004242 9.8e-131 470.7 340 66.8
BcaC03g17018 Brassica carinata HOM05D003668 ORTHO05D004242 1.7e-130 469.9 345 65.5
Thhalv10000862m.g Eutrema salsugineum HOM05D003668 ORTHO05D004242 2.2e-130 469.5 344 64.5
MBI05_g00408_MAGBIO Magnolia biondii HOM05D003668 ORTHO05D004242 2.8e-130 469.2 337 68.8
Migut.L00756 Erythranthe guttata HOM05D003668 ORTHO05D004242 6.3e-130 468.0 350 68.9
ClCG05G022250 Citrullus lanatus HOM05D003668 ORTHO05D004242 8.3e-130 467.6 337 69.1
AUR62014140 Chenopodium quinoa HOM05D003668 ORTHO05D004242 1.4e-129 466.8 377 61.0
PSO478G1788 Papaver somniferum HOM05D003668 ORTHO05D004242 2.4e-129 466.1 371 62.5
EL10Ac6g14242 Beta vulgaris HOM05D003668 ORTHO05D004242 4.1e-129 465.3 340 66.5
Sp1g13410 Schrenkiella parvula HOM05D003668 ORTHO05D004242 7.0e-129 464.5 348 64.4
AUR62041242 Chenopodium quinoa HOM05D003668 ORTHO05D004242 2.0e-128 463.0 391 58.8
Carub.0005s0025 Capsella rubella HOM05D003668 ORTHO05D004242 7.8e-128 461.1 355 63.9
DCAR_007279 Daucus carota HOM05D003668 ORTHO05D004242 7.8e-128 461.1 337 64.1
TAR629G1414 Trochodendron aralioides HOM05D003668 ORTHO05D004242 7.8e-128 461.1 353 65.2
CARHR015560 Cardamine hirsuta HOM05D003668 ORTHO05D004242 1.3e-127 460.3 343 65.3
AL1G27090 Arabidopsis lyrata HOM05D003668 ORTHO05D004242 1.7e-127 459.9 348 64.4
Aa31LG2G8640 Aethionema arabicum HOM05D003668 ORTHO05D004242 5.0e-127 458.4 347 64.0
BolC2t11016H Brassica oleracea HOM05D003668 ORTHO05D004242 1.5e-126 456.8 338 64.8
A02p31850 Brassica napus HOM05D003668 ORTHO05D004242 3.3e-126 455.7 338 65.1
AT1G15020 Arabidopsis thaliana HOM05D003668 ORTHO05D004242 4.3e-126 455.3 348 63.8
C02p49290 Brassica napus HOM05D003668 ORTHO05D004242 4.3e-126 455.3 338 64.8
BraA02t08194Z Brassica rapa HOM05D003668 ORTHO05D004242 5.6e-126 454.9 338 65.1
AL5G10220 Arabidopsis lyrata HOM05D003668 ORTHO05D004242 9.5e-126 454.1 350 63.1
CDE07G1523 Ceratophyllum demersum HOM05D003668 ORTHO05D004242 1.2e-125 453.8 348 62.1
AT2G01270 Arabidopsis thaliana HOM05D003668 ORTHO05D004242 2.8e-125 452.6 350 63.4
BcaB07g30412 Brassica carinata HOM05D003668 ORTHO05D004242 6.1e-125 451.4 355 62.0
C05p13170 Brassica napus HOM05D003668 ORTHO05D004242 1.4e-124 450.3 339 63.4
Lsat_1_v5_gn_8_42960 Lactuca sativa HOM05D003668 ORTHO05D004242 3.0e-124 449.1 350 64.9
BcaB02g06567 Brassica carinata HOM05D003668 ORTHO05D004242 5.2e-124 448.4 337 64.7
BcaC05g25439 Brassica carinata HOM05D003668 ORTHO05D004242 1.2e-123 447.2 339 63.4
Migut.E00406 Erythranthe guttata HOM05D003668 ORTHO05D004242 1.5e-123 446.8 337 64.7
BraA06t24284Z Brassica rapa HOM05D003668 ORTHO05D004242 4.4e-123 445.3 340 63.2
HanXRQChr08g0212821 Helianthus annuus HOM05D003668 ORTHO05D004242 4.4e-123 445.3 339 66.1
Ciclev10015050m.g Citrus clementina HOM05D003668 ORTHO05D004242 7.5e-123 444.5 337 65.0
Sp2g12730 Schrenkiella parvula HOM05D003668 ORTHO05D004242 1.7e-122 443.4 350 62.3
BolC5t30053H Brassica oleracea HOM05D003668 ORTHO05D004242 2.9e-122 442.6 339 63.1
HanXRQChr15g0488541 Helianthus annuus HOM05D003668 ORTHO05D004242 2.9e-122 442.6 337 64.4
A06p11040 Brassica napus HOM05D003668 ORTHO05D004242 4.9e-122 441.8 340 62.6
MBI10_g37695_MAGBIO Magnolia biondii HOM05D003668 ORTHO05D004242 2.4e-121 439.5 339 64.0
A09p61640 Brassica napus HOM05D003668 ORTHO05D004242 5.4e-121 438.3 339 63.1
BraA09t41536Z Brassica rapa HOM05D003668 ORTHO05D004242 5.4e-121 438.3 339 63.1
Aa31LG1G80 Aethionema arabicum HOM05D003668 ORTHO05D004242 1.2e-120 437.2 360 61.4
BolC8t52070H Brassica oleracea HOM05D003668 ORTHO05D004242 1.3e-119 433.7 339 62.5
C08p45220 Brassica napus HOM05D003668 ORTHO05D004242 3.0e-119 432.6 339 62.2
BcaB02g06571 Brassica carinata HOM05D003668 ORTHO05D004242 8.6e-119 431.0 338 62.1
Thhalv10007339m.g Eutrema salsugineum HOM05D003668 ORTHO05D004242 1.9e-118 429.9 348 62.1
CDE06G0369 Ceratophyllum demersum HOM05D003668 ORTHO05D004242 1.4e-113 413.7 341 59.5
Carub.0001s1479 Capsella rubella HOM05D003668 ORTHO05D004242 3.2e-113 412.5 337 60.2
HPP92_020133 Vanilla planifolia HOM05D003668 ORTHO05D004242 4.0e-108 395.6 326 57.4
ECA233G5938 Erigeron canadensis HOM05D003668 ORTHO05D004242 7.8e-104 381.3 347 57.9
C07p31700 Brassica napus HOM05D003668 ORTHO05D004242 5.8e-99 365.2 293 59.7
BolC7t43709H Brassica oleracea HOM05D003668 ORTHO05D004242 1.3e-95 354.0 286 59.1
Zm00001eb295030 Zea mays HOM05D003668 ORTHO05D004242 3.0e-95 352.8 255 65.9
Dinv09244 Davidia involucrata HOM05D003668 ORTHO05D004242 6.9e-92 341.7 193 82.4
SMO092G0001 Selaginella moellendorffii HOM05D003668 ORTHO05D004242 2.0e-75 287.0 337 43.3
Mapoly0013s0166 Marchantia polymorpha HOM05D003668 ORTHO05D004242 7.1e-65 251.9 347 38.3
SMO351G0322 Selaginella moellendorffii HOM05D003668 ORTHO05D004242 2.3e-63 246.9 335 39.4
Pp3c20_23660 Physcomitrium patens HOM05D003668 ORTHO05D004242 5.1e-63 245.7 337 40.7
CBR_g58693 Chara braunii HOM05D003668 ORTHO05D004242 2.2e-58 230.3 335 37.6
unitig_27.g25262 Utricularia gibba HOM05D003668 ORTHO05D004242 6.5e-58 228.8 144 70.8
Lalb_Chr21g0308541 Lupinus albus HOM05D003668 ORTHO05D004242 7.7e-51 205.3 146 67.8
Pp3c21_14060 Physcomitrium patens HOM05D003668 ORTHO05D004242 8.5e-50 201.8 302 38.1
Hma1.2p1_0114F.1_g055240 Hydrangea macrophylla HOM05D003668 ORTHO05D004242 7.2e-49 198.7 137 75.2
Hma1.2p1_0114F.1_g055230 Hydrangea macrophylla HOM05D003668 ORTHO05D004242 2.6e-46 190.3 123 74.0
Pp3c19_11370 Physcomitrium patens HOM05D003668 ORTHO05D004242 5.0e-42 176.0 307 34.5
Pp3c1_7010 Physcomitrium patens HOM05D003668 ORTHO05D004242 5.0e-42 176.0 249 36.9
HPP92_020123 Vanilla planifolia HOM05D003668 ORTHO05D004242 1.1e-36 158.3 328 34.5
Lalb_Chr21g0308531 Lupinus albus HOM05D003668 ORTHO05D004242 1.2e-35 154.8 184 46.2
SEGI_30172 Sequoiadendron giganteum HOM05D003668 ORTHO05D004242 5.0e-34 149.4 124 52.4
Cre04.g230928 Chlamydomonas reinhardtii HOM05D003668 ORTHO05D004242 4.2e-33 146.4 267 34.1
MCO15G061 Micromonas commoda HOM05D003668 ORTHO05D004242 4.7e-32 142.9 304 31.9
PRCOL_00000170 Prasinoderma coloniale HOM05D003668 ORTHO05D004242 1.2e-30 138.3 236 36.9
Medtr1g108520 Medicago truncatula HOM05D003668 ORTHO05D004242 4.8e-21 106.3 150 42.7
SHI16330 Sapria himalayana HOM05D003668 ORTHO05D004242 7.0e-20 102.4 79 65.8
HanXRQChr02g0056061 Helianthus annuus HOM05D003668 ORTHO05D221127 5.9e-19 99.4 167 38.9
SHI16331 Sapria himalayana HOM05D000002 ORTHO05D000001 1.9e-17 94.4 108 47.2
Medtr0121s0090 Medicago truncatula HOM05D003668 ORTHO05D004242 3.6e-16 90.1 82 56.1
Nn6g35717 Nelumbo nucifera HOM05D003668 ORTHO05D004242 5.0e-10 69.7 47 66.0
vmacro01048 Vaccinium macrocarpon HOM05D001299 ORTHO05D004242 1.9e-09 67.8 109 45.9
SHI16328 Sapria himalayana HOM05D003668 ORTHO05D004242 9.5e-09 65.5 48 62.5
Eucgr.B02885 Eucalyptus grandis HOM05D003668 ORTHO05D004242 8.0e-08 62.4 57 57.9
Glyma.20G135000 Glycine max HOM05D003668 ORTHO05D004242 1.0e-07 62.0 48 64.6
QL01p002329 Quercus lobata HOM05D000125 ORTHO05D000120 8.9e-07 58.9 35 82.9


User provided reference genes

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