Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 2.8e-166 588.6 306 100.0
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 3.3e-82 309.3 307 59.0
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 1.3e-78 297.4 274 63.1
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 9.0e-72 274.6 329 51.7
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 2.6e-63 246.5 338 45.0
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 1.7e-62 243.8 354 43.5
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 1.1e-61 241.1 304 49.7
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 1.4e-61 240.7 340 43.8
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 1.4e-61 240.7 354 43.2
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 1.2e-60 237.7 354 45.2
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 1.6e-60 237.3 230 60.0
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 7.9e-60 235.0 354 42.1
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 1.0e-59 234.6 353 43.6
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 3.1e-56 223.0 335 41.5
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 3.1e-56 223.0 345 42.9
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 4.1e-56 222.6 368 40.8
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 6.9e-56 221.9 304 47.0
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 2.0e-55 220.3 305 47.5
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 2.6e-55 219.9 340 41.2
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 2.6e-55 219.9 361 39.9
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 5.9e-55 218.8 366 39.1
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 5.9e-55 218.8 345 42.3
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 7.7e-55 218.4 367 41.7
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 5.0e-54 215.7 358 40.2
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 1.9e-53 213.8 364 40.4
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 3.9e-51 206.1 359 39.0
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 3.9e-51 206.1 359 38.7
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 1.1e-50 204.5 334 41.6
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 1.5e-50 204.1 345 39.7
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 2.5e-50 203.4 359 38.7
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 7.4e-50 201.8 359 38.4
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 7.4e-50 201.8 369 38.2
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 7.4e-50 201.8 351 40.5
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 1.3e-49 201.1 368 38.0
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 1.7e-49 200.7 354 38.1
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 3.7e-49 199.5 340 40.6
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 6.3e-49 198.7 351 37.6
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 8.2e-49 198.4 309 41.7
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 3.1e-48 196.4 352 37.2
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 4.1e-48 196.1 354 39.3
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 6.9e-48 195.3 370 35.4
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 9.1e-48 194.9 363 39.1
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 4.5e-47 192.6 312 39.1
Rhsim06G0021600 Rhododendron simsii HOM05D005472 ORTHO05D005897 1.7e-46 190.7 366 38.8
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 4.2e-45 186.0 335 37.3
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 7.2e-45 185.3 366 35.5
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 9.4e-45 184.9 341 39.3
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 1.2e-44 184.5 270 38.9
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 1.0e-43 181.4 334 37.4
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 1.4e-43 181.0 342 36.0
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 1.8e-43 180.6 365 34.0
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 2.3e-43 180.3 357 36.4
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 8.8e-43 178.3 333 37.2
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 1.5e-42 177.6 365 34.5
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 3.3e-42 176.4 278 38.8
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 3.3e-42 176.4 378 34.7
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 4.4e-42 176.0 297 39.4
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 2.2e-41 173.7 358 34.6
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 2.2e-41 173.7 276 41.7
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 2.8e-41 173.3 250 39.6
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 2.8e-41 173.3 337 37.4
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 3.7e-41 172.9 347 37.2
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 4.8e-41 172.6 347 35.7
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 1.1e-40 171.4 330 34.8
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 2.4e-40 170.2 356 34.0
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 9.1e-40 168.3 332 34.0
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 1.2e-39 167.9 364 34.9
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 1.5e-39 167.5 325 36.6
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 1.5e-39 167.5 355 34.9
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 2.6e-39 166.8 329 35.9
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 2.6e-39 166.8 335 34.3
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 2.6e-39 166.8 299 37.5
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 3.5e-39 166.4 407 33.4
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 5.9e-39 165.6 310 35.2
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 7.7e-39 165.2 309 39.5
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 1.7e-38 164.1 355 34.4
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 2.2e-38 163.7 356 33.7
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 8.5e-38 161.8 330 35.2
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 1.5e-37 161.0 310 33.9
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 1.5e-37 161.0 370 33.0
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 1.5e-37 161.0 369 34.4
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 4.2e-37 159.5 336 34.5
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 1.2e-36 157.9 355 33.8
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 1.6e-36 157.5 356 34.3
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 2.1e-36 157.1 377 35.3
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 2.1e-36 157.1 350 34.9
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 4.7e-36 156.0 265 37.7
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 6.1e-36 155.6 372 34.4
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 1.0e-35 154.8 358 32.7
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 1.4e-35 154.5 309 37.2
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 2.3e-35 153.7 350 35.1
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 3.9e-35 152.9 352 34.1
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 6.7e-35 152.1 320 33.1
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 6.7e-35 152.1 283 35.3
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 1.1e-34 151.4 324 34.3
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 1.1e-34 151.4 353 35.1
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 2.6e-34 150.2 334 32.0
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 2.6e-34 150.2 360 33.6
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 4.4e-34 149.4 312 33.3
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 4.4e-34 149.4 363 32.2
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 9.7e-34 148.3 329 32.5
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 1.3e-33 147.9 330 32.7
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 2.2e-33 147.1 318 32.4
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 3.7e-33 146.4 336 32.7
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 1.4e-32 144.4 368 32.3
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 2.4e-32 143.7 320 33.4
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 3.1e-32 143.3 322 33.5
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 4.1e-32 142.9 209 41.1
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 9.1e-32 141.7 320 33.4
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 1.7e-30 137.5 277 32.5
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 1.7e-30 137.5 309 35.0
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 2.2e-30 137.1 359 34.0
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 1.1e-29 134.8 290 33.4
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 1.8e-27 127.5 367 27.8
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 6.8e-27 125.6 346 31.8
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 3.4e-26 123.2 366 30.3
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 7.5e-26 122.1 347 29.1
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 3.7e-25 119.8 298 32.6
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 6.3e-25 119.0 216 33.8
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 1.8e-24 117.5 354 28.8
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 1.2e-23 114.8 364 29.4
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 2.5e-21 107.1 233 31.8
ECA232G3880 Erigeron canadensis HOM05D005472 ORTHO05D005897 1.2e-20 104.8 199 33.7
MD08G1013200 Malus domestica HOM05D005472 ORTHO05D005897 1.8e-19 100.9 153 47.1
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 2.6e-18 97.1 254 28.3
CANSAT78G2470 Cannabis sativa HOM05D005472 ORTHO05D005897 3.4e-18 96.7 102 46.1
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 4.1e-16 89.7 150 42.0
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 5.4e-16 89.4 103 46.6
SGA_v2.0_scaffold92G28230 Striga asiatica HOM05D005472 ORTHO05D005897 1.2e-15 88.2 348 25.9
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 5.9e-15 85.9 345 27.2
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 3.3e-13 80.1 243 30.5
MD00G1092800 Malus domestica HOM05D005472 ORTHO05D005897 3.6e-12 76.6 105 37.1
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 3.6e-12 76.6 363 22.0
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 4.7e-12 76.3 181 32.0
MBI09_g43704_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 1.2e-10 71.6 131 39.7
Dinv39518 Davidia involucrata HOM05D005472 ORTHO05D005897 2.0e-10 70.9 219 28.8
Aqoxy4G01720 Aquilegia oxysepala HOM05D017957 ORTHO05D005897 9.2e-08 62.0 191 28.8
Aqoxy2G01737 Aquilegia oxysepala HOM05D017957 ORTHO05D005897 4.6e-07 59.7 214 22.9
Aqoxy7G02104 Aquilegia oxysepala HOM05D003461 ORTHO05D005897 4.6e-07 59.7 278 22.7
SEGI_34762 Sequoiadendron giganteum HOM05D005472 ORTHO05D005897 5.9e-07 59.3 287 19.5
SMO351G0278 Selaginella moellendorffii HOM05D029214 ORTHO05D026603 5.0e-06 56.2 268 23.9


User provided reference genes

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