Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003493 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 8.2e-45 183.3 92 100.0
CSS0005375 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 1.4e-39 166.0 92 92.4
CSS0010853 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 1.4e-39 166.0 92 92.4
CSS0012144 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 1.4e-39 166.0 92 92.4
CSS0046948 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 3.8e-34 147.9 96 84.4
Rhsim01G0078400 Rhododendron simsii HOM05D003010 ORTHO05D010439 1.1e-12 76.6 96 56.2
Nn8g39368 Nelumbo nucifera HOM05D003010 ORTHO05D010439 2.4e-12 75.5 93 54.8
Cc06_g08930 Coffea canephora HOM05D018231 ORTHO05D010439 4.5e-11 71.2 90 46.7
DCAR_009212 Daucus carota HOM05D000639 ORTHO05D005966 1.3e-10 69.7 92 50.0
Manes.11G101800 Manihot esculenta HOM05D009305 ORTHO05D010439 5.0e-10 67.8 92 48.9
TAR625G0712 Trochodendron aralioides HOM05D003010 ORTHO05D010439 5.0e-10 67.8 88 47.7
Cfa003337 Carpinus fangiana HOM05D003010 ORTHO05D010439 8.6e-10 67.0 93 52.7
Atru.chr7.1234 Acer truncatum HOM05D009305 ORTHO05D010439 1.1e-09 66.6 98 46.9
HanXRQChr08g0229131 Helianthus annuus HOM05D003010 ORTHO05D003623 1.1e-09 66.6 91 48.4
Ciclev10010147m.g Citrus clementina HOM05D003010 ORTHO05D010439 1.5e-09 66.2 92 47.8
Haze_25626 Corylus avellana HOM05D003010 ORTHO05D010439 3.3e-09 65.1 95 49.5
QL02p087437 Quercus lobata HOM05D009305 ORTHO05D010439 3.3e-09 65.1 91 48.4
CiPaw.04G169500 Carya illinoinensis HOM05D009305 ORTHO05D010439 7.3e-09 63.9 89 49.4
PSO339G5114 Papaver somniferum HOM05D003010 ORTHO05D010439 1.2e-08 63.2 99 44.4
PSO801G0586 Papaver somniferum HOM05D003010 ORTHO05D003623 1.2e-08 63.2 99 44.4
Prupe.7G238200 Prunus persica HOM05D009305 ORTHO05D010439 1.6e-08 62.8 96 45.8
HanXRQChr10g0316761 Helianthus annuus HOM05D003010 ORTHO05D003623 2.1e-08 62.4 92 45.7
Duzib205G1418 Durio zibethinus HOM05D003010 ORTHO05D003623 2.8e-08 62.0 92 37.0
Aqoxy7G02055 Aquilegia oxysepala HOM05D003010 ORTHO05D003623 4.7e-08 61.2 89 44.9
FAN26G0439 Fragaria x ananassa HOM05D009305 ORTHO05D010439 1.0e-07 60.1 89 42.7
Potri.008G015800 Populus trichocarpa HOM05D003010 ORTHO05D010439 1.4e-07 59.7 87 41.4
ECA234G2671 Erigeron canadensis HOM05D003010 ORTHO05D010439 1.8e-07 59.3 92 44.6
RcHm_v2.0_Chr2g0089271 Rosa chinensis HOM05D009305 ORTHO05D010439 1.8e-07 59.3 90 42.2
Thecc.09G121000 Theobroma cacao HOM05D029830 ORTHO05D010439 2.3e-07 58.9 94 43.6
CAN.G761.23 Capsicum annuum HOM05D003010 ORTHO05D003623 3.0e-07 58.5 95 38.9
Cpa.g.sc13.241 Carica papaya HOM05D003010 ORTHO05D003623 3.0e-07 58.5 88 39.8
Gohir.D08G184800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 3.0e-07 58.5 92 37.0
Lsat_1_v5_gn_5_97941 Lactuca sativa HOM05D003010 ORTHO05D003623 3.0e-07 58.5 96 40.6
Oeu017218.3 Olea europaea HOM05D003010 ORTHO05D003623 3.0e-07 58.5 93 40.9
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 4.0e-07 58.2 88 40.9
FAN19G2542 Fragaria x ananassa HOM05D009305 ORTHO05D010439 5.2e-07 57.8 98 42.9
Gohir.A08G165900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 6.8e-07 57.4 92 35.9
EL10Ac5g12296 Beta vulgaris HOM05D003010 ORTHO05D003623 8.9e-07 57.0 91 40.7
Gorai.004G194100 Gossypium raimondii HOM05D003010 ORTHO05D003623 8.9e-07 57.0 92 35.9
CDE01G0248 Ceratophyllum demersum HOM05D003010 ORTHO05D003623 1.2e-06 56.6 96 35.4
Gorai.004G278100 Gossypium raimondii HOM05D029830 ORTHO05D010439 3.4e-06 55.1 92 42.4
arahy.Tifrunner.gnm1.ann1.0EDZ2A Arachis hypogaea HOM05D009305 ORTHO05D010439 5.7e-06 54.3 90 41.1
C03p11370 Brassica napus HOM05D009305 ORTHO05D010439 5.7e-06 54.3 85 42.4
Sed0015404 Sechium edule HOM05D009305 ORTHO05D010439 5.7e-06 54.3 84 48.8
PGSC0003DMG400026255 Solanum tuberosum HOM05D003010 ORTHO05D003623 5.7e-06 54.3 87 42.5
TWI81G0439 Tripterygium wilfordii HOM05D003010 ORTHO05D003623 5.7e-06 54.3 92 38.0
A03p09790 Brassica napus HOM05D009305 ORTHO05D010439 7.5e-06 53.9 85 42.4
BolC3t13610H Brassica oleracea HOM05D009305 ORTHO05D010439 7.5e-06 53.9 85 42.4
Lj4g0006068 Lotus japonicus HOM05D003010 ORTHO05D010439 7.5e-06 53.9 94 40.4
Lj4g0025656 Lotus japonicus HOM05D003010 ORTHO05D010439 7.5e-06 53.9 94 40.4
Potri.008G015100 Populus trichocarpa HOM05D003010 ORTHO05D010439 7.5e-06 53.9 87 41.4
Solyc08g078060.3 Solanum lycopersicum HOM05D003010 ORTHO05D003623 7.5e-06 53.9 87 42.5
Sopen08g026560 Solanum pennellii HOM05D003010 ORTHO05D003623 7.5e-06 53.9 88 42.0
COL.COLO4_35181 Corchorus olitorius HOM05D018231 ORTHO05D010439 9.8e-06 53.5 103 41.7
Gohir.A08G239500 Gossypium hirsutum HOM05D029830 ORTHO05D010439 9.8e-06 53.5 92 42.4


User provided reference genes

Program Settings