Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 1.1e-85 320.1 187 100.0
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 7.2e-56 221.1 199 66.3
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 4.7e-55 218.4 193 64.2
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 5.4e-51 204.9 184 63.0
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 2.7e-50 202.6 194 63.4
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 1.3e-49 200.3 169 65.7
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 2.9e-49 199.1 188 62.2
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 6.5e-49 198.0 176 64.8
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 1.9e-48 196.4 169 66.9
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 6.1e-47 191.4 181 61.3
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 3.0e-46 189.1 168 61.9
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 1.2e-45 187.2 191 62.8
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 3.4e-45 185.7 183 57.9
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 4.4e-45 185.3 188 59.0
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 7.5e-45 184.5 201 61.2
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 9.8e-45 184.1 186 57.0
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 2.2e-44 183.0 201 60.7
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 2.2e-44 183.0 186 55.4
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 4.9e-44 181.8 179 57.0
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 8.3e-44 181.0 168 60.7
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 1.1e-43 180.6 170 62.4
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 1.4e-43 180.3 179 56.4
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 1.4e-43 180.3 169 59.8
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 1.8e-43 179.9 201 60.2
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 2.4e-43 179.5 177 55.9
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 2.4e-43 179.5 183 56.3
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 5.4e-43 178.3 193 56.5
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 7.0e-43 177.9 188 56.4
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 3.5e-42 175.6 186 57.5
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 3.5e-42 175.6 189 61.4
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 5.9e-42 174.9 182 53.3
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 5.9e-42 174.9 184 56.5
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 1.3e-41 173.7 170 64.1
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 2.3e-41 172.9 164 61.6
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 2.3e-41 172.9 251 48.6
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 3.3e-40 169.1 191 51.3
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 2.8e-39 166.0 183 53.6
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 4.7e-39 165.2 182 52.2
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 4.7e-39 165.2 178 56.7
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 1.4e-38 163.7 169 55.6
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 1.4e-38 163.7 176 52.3
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 2.3e-38 162.9 185 51.4
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 4.0e-38 162.2 191 53.9
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 6.8e-38 161.4 173 54.9
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 6.8e-38 161.4 187 50.8
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 6.8e-38 161.4 187 50.8
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 8.9e-38 161.0 199 53.3
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 1.5e-37 160.2 187 50.3
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 2.0e-37 159.8 187 50.3
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 2.0e-37 159.8 160 56.2
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 2.6e-37 159.5 167 55.1
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 4.4e-37 158.7 173 53.8
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 9.8e-37 157.5 174 53.4
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 9.8e-37 157.5 174 53.4
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 9.8e-37 157.5 173 52.6
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.7e-36 156.8 178 51.7
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 2.2e-36 156.4 182 51.6
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 2.9e-36 156.0 182 52.7
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 3.7e-36 155.6 155 57.4
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 3.7e-36 155.6 155 57.4
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 4.9e-36 155.2 177 53.1
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 6.4e-36 154.8 182 52.2
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 1.1e-35 154.1 195 48.2
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 1.1e-35 154.1 163 54.6
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.8e-35 153.3 182 51.1
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 2.4e-35 152.9 184 54.9
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 9.2e-35 151.0 189 55.6
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 9.2e-35 151.0 195 50.8
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 2.7e-34 149.4 195 52.8
CSS0041532 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 3.5e-34 149.1 182 58.2
CSS0044809 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 3.5e-34 149.1 182 58.2
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 3.5e-34 149.1 193 49.2
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 5.9e-34 148.3 200 54.5
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 7.8e-34 147.9 169 56.8
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 1.7e-33 146.7 199 54.8
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 1.7e-33 146.7 169 56.2
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 2.3e-33 146.4 177 49.2
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 2.3e-33 146.4 177 49.2
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 3.9e-33 145.6 178 51.7
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 5.0e-33 145.2 159 52.8
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 6.6e-33 144.8 172 57.0
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 6.6e-33 144.8 186 50.0
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 1.5e-32 143.7 183 50.8
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 1.5e-32 143.7 174 53.4
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 3.3e-32 142.5 223 43.5
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 4.3e-32 142.1 178 49.4
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 9.5e-32 141.0 171 57.3
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 1.2e-31 140.6 186 51.6
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 2.1e-31 139.8 204 47.1
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 2.8e-31 139.4 174 52.3
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 4.7e-31 138.7 191 46.6
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 6.2e-31 138.3 161 54.7
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 1.0e-30 137.5 189 52.9
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 1.4e-30 137.1 168 47.0
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 3.1e-30 136.0 191 48.7
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 8.9e-30 134.4 203 44.8
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 1.2e-29 134.0 194 47.9
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 1.5e-29 133.7 154 50.6
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 7.5e-29 131.3 200 51.0
Oeu006186.1 Olea europaea HOM05D005061 ORTHO05D006001 9.8e-29 131.0 109 67.0
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 1.3e-28 130.6 170 55.3
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 1.7e-28 130.2 196 53.1
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 2.2e-28 129.8 196 51.5
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 2.9e-28 129.4 177 45.8
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 8.3e-28 127.9 181 53.0
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 1.1e-27 127.5 156 51.3
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 2.4e-27 126.3 154 56.5
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 2.4e-27 126.3 154 56.5
TWI34G0245 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 2.4e-27 126.3 187 51.3
MELO3C006306.2 Cucumis melo HOM05D005061 ORTHO05D006001 2.3e-25 119.8 180 47.2
DCAR_026627 Daucus carota HOM05D005061 ORTHO05D006001 3.0e-25 119.4 123 62.6
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 5.0e-25 118.6 195 42.1
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 8.6e-25 117.9 195 49.7
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 1.6e-23 113.6 190 42.1
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 1.1e-22 110.9 186 47.3
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 5.2e-22 108.6 183 39.9
Potri.001G317300 Populus trichocarpa HOM05D005061 ORTHO05D006001 5.2e-22 108.6 186 47.3
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 1.2e-21 107.5 169 45.6
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 1.5e-21 107.1 161 49.7
CiPaw.01G118900 Carya illinoinensis HOM05D005061 ORTHO05D006001 2.2e-20 103.2 197 45.7
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 4.9e-20 102.1 169 46.2
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 1.9e-19 100.1 131 45.8
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 2.7e-18 96.3 143 44.1
TWI34G1372 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 2.7e-18 96.3 187 43.3
arahy.Tifrunner.gnm1.ann1.IKZ5YQ Arachis hypogaea HOM05D000225 ORTHO05D001595 3.0e-17 92.8 103 53.4
Lsat_1_v5_gn_6_60821 Lactuca sativa HOM05D005061 ORTHO05D006001 3.0e-17 92.8 192 45.8
SEGI_31023 Sequoiadendron giganteum HOM05D005061 ORTHO05D006001 2.5e-16 89.7 187 32.6
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 4.3e-16 89.0 130 43.8
arahy.Tifrunner.gnm1.ann1.SQKG7P Arachis hypogaea HOM05D005061 ORTHO05D006001 7.3e-16 88.2 103 61.2
CsaV3_3G010880 Cucumis sativus L. HOM05D005061 ORTHO05D006001 8.1e-15 84.7 124 46.8
ATR0745G004 Amborella trichopoda HOM05D005061 ORTHO05D006001 4.0e-14 82.4 179 42.5
Sc19g0007210 Simmondsia chinensis HOM05D005061 ORTHO05D006001 2.0e-13 80.1 65 63.1
arahy.Tifrunner.gnm1.ann1.16QZ2B Arachis hypogaea HOM05D001164 ORTHO05D026902 3.4e-13 79.3 89 56.2
arahy.Tifrunner.gnm1.ann1.KB0HQZ Arachis hypogaea HOM05D005061 ORTHO05D006001 3.4e-13 79.3 103 57.3
FAN12G0303 Fragaria x ananassa HOM05D005061 ORTHO05D006001 3.4e-13 79.3 57 75.4
arahy.Tifrunner.gnm1.ann1.W60CWR Arachis hypogaea HOM05D005061 ORTHO05D006001 3.7e-12 75.9 125 50.4
Thhalv10009372m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 9.2e-11 71.2 74 48.6
FvH4_4g13580 Fragaria vesca HOM05D005061 ORTHO05D006001 2.7e-10 69.7 174 39.1
FAN12G1864 Fragaria x ananassa HOM05D005061 ORTHO05D006001 2.7e-10 69.7 174 39.1
arahy.Tifrunner.gnm1.ann1.J1UTGX Arachis hypogaea HOM05D005061 ORTHO05D016631 6.0e-10 68.6 103 55.3
arahy.Tifrunner.gnm1.ann1.L4TH9M Arachis hypogaea HOM05D005061 ORTHO05D006001 1.3e-09 67.4 121 48.8
Lj3P401T12 Lonicera japonica HOM05D005061 ORTHO05D006001 1.2e-07 60.8 42 59.5
BolC9t53436H Brassica oleracea HOM05D005061 ORTHO05D006001 6.2e-07 58.5 48 64.6
Pp3c15_23810 Physcomitrium patens HOM05D024020 ORTHO05D023538 3.1e-06 56.2 127 33.1
Pp3c15_23812 Physcomitrium patens HOM05D024020 ORTHO05D023538 3.1e-06 56.2 127 33.1
Actinidia38751 Actinidia chinensis HOM05D002342 ORTHO05D002407 5.2e-06 55.5 69 58.0


User provided reference genes

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