Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1493.8 731 100.0
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1478.4 731 99.0
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 0.0e+00 1402.9 731 92.9
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1380.9 732 91.9
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1367.4 773 86.4
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 0.0e+00 1362.1 732 89.5
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1361.7 732 89.5
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1359.4 778 85.3
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1359.4 778 85.3
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 0.0e+00 1357.0 732 89.3
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 0.0e+00 1355.5 734 90.1
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1351.7 732 89.1
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 0.0e+00 1351.7 732 88.0
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 0.0e+00 1351.7 734 88.6
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1347.4 732 88.8
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 0.0e+00 1346.6 732 88.7
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1345.1 732 87.7
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 0.0e+00 1345.1 733 88.4
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1343.6 732 88.3
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 0.0e+00 1343.2 732 88.3
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 0.0e+00 1342.8 732 88.1
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 0.0e+00 1342.0 746 87.7
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 0.0e+00 1342.0 734 87.6
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1338.9 724 89.1
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1337.8 732 87.7
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 0.0e+00 1337.8 732 86.9
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 0.0e+00 1337.4 732 87.8
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1337.0 732 87.7
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 0.0e+00 1335.1 732 87.0
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1335.1 732 87.8
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 0.0e+00 1334.7 733 87.7
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 0.0e+00 1334.7 732 88.1
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1332.8 734 87.2
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 0.0e+00 1332.4 732 88.1
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1330.9 732 86.3
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 0.0e+00 1330.5 733 87.9
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 0.0e+00 1330.5 732 88.5
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 0.0e+00 1329.3 730 86.2
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 0.0e+00 1328.9 732 87.8
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1328.5 732 86.1
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 0.0e+00 1328.2 734 87.1
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1328.2 732 85.9
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1328.2 730 86.0
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1328.2 730 86.0
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 0.0e+00 1326.6 732 86.9
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 0.0e+00 1326.6 733 87.4
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1323.9 734 86.5
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 0.0e+00 1322.0 733 87.4
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 0.0e+00 1318.9 732 87.2
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1314.7 733 87.2
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 0.0e+00 1314.7 733 86.8
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1313.9 735 87.2
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1310.8 782 82.5
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1310.8 732 86.5
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1309.3 735 84.9
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 0.0e+00 1308.9 733 85.1
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1308.9 775 82.7
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 0.0e+00 1308.5 749 85.0
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1305.8 733 85.5
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 0.0e+00 1305.4 732 85.7
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 0.0e+00 1303.5 732 85.8
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 0.0e+00 1302.0 732 86.3
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 0.0e+00 1301.2 697 89.2
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1298.5 732 84.8
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1297.7 732 85.2
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 0.0e+00 1297.7 732 84.7
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1295.0 734 84.7
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 0.0e+00 1295.0 734 85.1
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1294.3 734 84.7
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1292.3 733 84.3
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 0.0e+00 1290.0 732 85.0
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1288.5 734 84.5
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1288.1 732 84.4
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 0.0e+00 1285.8 733 85.0
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 0.0e+00 1285.4 732 85.8
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1283.5 727 84.7
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 0.0e+00 1281.9 732 83.6
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 0.0e+00 1275.8 732 83.5
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 0.0e+00 1275.4 830 77.3
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1270.4 732 82.9
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 0.0e+00 1270.0 732 83.2
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1269.2 732 83.2
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1268.8 732 82.8
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 0.0e+00 1265.8 732 85.4
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 0.0e+00 1265.4 732 83.6
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1265.0 732 83.1
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 0.0e+00 1265.0 732 82.9
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1264.6 732 83.1
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1263.8 732 83.2
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 0.0e+00 1263.4 732 83.1
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1261.9 732 83.1
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 0.0e+00 1261.1 732 82.8
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1259.6 732 82.8
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1257.7 732 82.4
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 0.0e+00 1248.8 732 84.2
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1245.0 706 83.7
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1236.9 736 81.1
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1236.5 730 81.0
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1234.6 663 88.7
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1226.5 733 79.7
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1223.8 751 79.4
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 0.0e+00 1219.1 732 81.7
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1216.1 744 79.7
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1215.7 744 79.8
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1214.9 743 79.7
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 0.0e+00 1212.6 735 80.4
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1210.7 735 80.3
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1201.4 659 87.1
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 0.0e+00 1200.3 667 87.1
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1190.3 723 78.8
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 0.0e+00 1182.9 741 77.6
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 0.0e+00 1161.7 733 76.4
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 0.0e+00 1156.4 616 90.9
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 0.0e+00 1156.4 616 90.7
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1146.0 699 78.4
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 0.0e+00 1145.2 707 77.2
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 0.0e+00 1139.4 734 75.3
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 0.0e+00 1130.5 585 94.0
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 0.0e+00 1095.1 733 72.6
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1091.6 732 74.0
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 0.0e+00 1077.0 706 74.6
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 0.0e+00 1075.8 751 72.3
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 2.7e-284 981.9 702 70.1
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 5.1e-283 977.6 735 64.9
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 1.5e-282 976.1 733 64.3
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 2.2e-281 972.2 715 65.5
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 2.2e-262 909.1 506 87.9
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 1.4e-259 899.8 690 62.8
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 6.8e-259 897.5 670 65.5
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 1.2e-258 896.7 567 77.6
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 2.2e-257 892.5 654 65.7
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 1.1e-248 863.6 697 60.4
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 9.5e-237 823.9 502 80.1
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 1.4e-232 810.1 702 57.3
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 4.0e-227 792.0 786 52.5
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 2.1e-223 779.6 417 90.6
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 1.5e-205 720.3 702 53.4
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.4e-184 650.6 422 75.4
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 1.8e-158 563.9 377 72.7
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 1.3e-156 557.8 303 90.8
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.6e-151 540.8 357 75.1
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 5.2e-150 535.8 317 81.7
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 1.2e-149 534.6 311 84.6
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 1.6e-143 514.2 349 76.8
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 7.0e-131 472.2 338 69.5
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 2.2e-116 424.1 287 72.8
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 5.6e-112 409.5 306 67.0
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 9.0e-94 349.0 209 79.4
Gohir.A08G111640 Gossypium hirsutum HOM05D003895 ORTHO05D004723 2.2e-92 344.4 182 85.7
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 5.8e-85 319.7 431 47.1
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 4.8e-79 300.1 353 50.1
SalBow2G0791 Salvia bowleyana HOM05D003895 ORTHO05D004723 2.8e-71 274.2 168 73.8
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 4.8e-71 273.5 221 63.8
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 5.5e-67 260.0 215 60.0
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 1.5e-64 251.9 204 64.2
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 7.2e-51 206.5 179 61.5
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 3.1e-46 191.0 101 82.2
AagrBONN_evm.TU.Sc2ySwM_228.4951 Anthoceros agrestis HOM05D003895 ORTHO05D004723 2.6e-45 188.0 218 44.5
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 5.9e-45 186.8 101 82.2
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 2.9e-44 184.5 207 52.2
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 6.1e-34 150.2 80 81.2
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 7.7e-29 133.3 140 50.7
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 7.7e-29 133.3 161 50.3
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 1.0e-25 122.9 101 63.4
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 1.1e-22 112.8 63 76.2
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 2.7e-21 108.2 187 36.9
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 4.5e-21 107.5 187 36.9
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 7.8e-21 106.7 60 83.3
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 7.8e-21 106.7 127 52.0
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 1.1e-19 102.8 111 50.5
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 3.6e-18 97.8 110 51.8
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 1.3e-15 89.4 54 70.4
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 2.5e-11 75.1 49 77.6
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 4.3e-11 74.3 74 52.7
Atru.chr9.1960 Acer truncatum HOM05D003895 ORTHO05D004723 5.6e-11 73.9 45 77.8
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 5.6e-11 73.9 73 53.4
Glyma.17G110701 Glycine max HOM05D003895 ORTHO05D004723 9.8e-08 63.2 34 85.3
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 1.3e-07 62.8 46 69.6
PGSC0003DMG400033059 Solanum tuberosum HOM05D003895 ORTHO05D004723 1.3e-07 62.8 40 70.0
Nitab4.5_0000050g0220 Nicotiana tabacum HOM05D003895 ORTHO05D285100 8.3e-07 60.1 43 76.7
Medtr3g108170 Medicago truncatula HOM05D003895 ORTHO05D260611 1.9e-06 58.9 52 59.6


User provided reference genes

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