Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 8.2e-235 816.6 395 100.0
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 9.6e-159 563.9 355 81.1
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 9.6e-159 563.9 355 81.1
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.6e-156 555.8 378 74.1
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 7.6e-156 554.3 377 74.0
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 9.9e-156 553.9 377 74.8
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 3.8e-155 552.0 363 74.4
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 9.3e-154 547.4 377 72.9
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 3.0e-152 542.3 377 71.1
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 3.3e-151 538.9 378 73.3
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.4e-141 506.9 364 67.3
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 1.8e-141 506.5 389 64.0
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 2.4e-141 506.1 377 65.8
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 4.0e-141 505.4 379 65.7
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 9.0e-141 504.2 390 64.1
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 9.0e-141 504.2 376 65.7
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 9.0e-141 504.2 377 64.7
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 1.5e-140 503.4 375 66.1
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 2.6e-140 502.7 366 66.7
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 3.4e-140 502.3 377 65.8
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 4.5e-140 501.9 364 66.2
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 7.6e-140 501.1 377 66.6
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 7.6e-140 501.1 377 64.7
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 7.6e-140 501.1 364 66.5
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.0e-139 500.7 385 68.1
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 1.3e-139 500.4 375 65.3
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 1.3e-139 500.4 364 66.8
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 2.9e-139 499.2 364 66.5
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 4.9e-139 498.4 387 63.3
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 4.9e-139 498.4 364 66.8
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 4.9e-139 498.4 376 65.4
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 6.5e-139 498.0 390 63.3
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.1e-138 497.3 380 64.5
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 1.9e-138 496.5 366 66.1
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 1.9e-138 496.5 364 65.7
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 2.5e-138 496.1 390 63.6
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 4.2e-138 495.4 364 65.7
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 4.2e-138 495.4 361 65.4
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 5.5e-138 495.0 366 65.0
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 5.5e-138 495.0 376 64.9
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 5.5e-138 495.0 376 64.9
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 7.1e-138 494.6 364 64.8
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 7.1e-138 494.6 366 65.3
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 9.3e-138 494.2 364 65.9
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 9.3e-138 494.2 376 65.7
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 1.2e-137 493.8 364 66.5
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.2e-137 493.8 381 64.0
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 1.6e-137 493.4 366 65.6
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 1.6e-137 493.4 365 64.9
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 2.1e-137 493.0 388 62.6
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 2.7e-137 492.7 376 64.6
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 3.5e-137 492.3 364 65.9
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 4.6e-137 491.9 377 64.7
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 6.0e-137 491.5 376 64.4
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.3e-136 490.3 376 64.1
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 2.3e-136 489.6 364 64.6
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 3.9e-136 488.8 371 64.2
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 3.9e-136 488.8 366 65.8
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 3.9e-136 488.8 379 64.6
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 8.7e-136 487.6 364 65.4
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 1.1e-135 487.3 370 63.5
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.1e-135 487.3 456 57.7
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 1.9e-135 486.5 371 63.9
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 2.5e-135 486.1 387 62.5
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 3.3e-135 485.7 363 64.5
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 9.7e-135 484.2 364 64.0
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 9.7e-135 484.2 363 66.9
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 1.6e-134 483.4 364 64.3
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 2.2e-134 483.0 364 63.5
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 2.2e-134 483.0 386 63.0
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 2.8e-134 482.6 377 62.6
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 5.3e-133 478.4 375 61.6
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 5.3e-133 478.4 375 61.9
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 6.9e-133 478.0 386 62.4
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 9.0e-133 477.6 363 65.0
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 1.5e-132 476.9 352 63.9
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 4.5e-132 475.3 364 63.2
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 2.9e-131 472.6 402 60.7
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 2.9e-131 472.6 377 62.1
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 5.0e-131 471.9 364 62.6
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 1.1e-130 470.7 377 61.5
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 1.1e-130 470.7 396 59.6
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 1.4e-130 470.3 364 62.6
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 2.5e-130 469.5 389 62.2
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 4.2e-130 468.8 377 61.8
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 5.5e-130 468.4 363 61.7
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 5.5e-130 468.4 400 59.5
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 9.4e-130 467.6 377 60.2
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 1.2e-129 467.2 378 61.9
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 2.1e-129 466.5 364 62.4
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 4.6e-129 465.3 387 62.3
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 1.0e-128 464.2 368 60.9
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 3.0e-128 462.6 400 59.8
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 3.0e-128 462.6 364 62.4
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 3.9e-128 462.2 377 60.2
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 2.5e-127 459.5 377 60.2
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 4.3e-127 458.8 377 59.9
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 7.4e-127 458.0 366 62.3
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 2.8e-126 456.1 375 60.0
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 4.8e-126 455.3 377 59.4
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 4.8e-126 455.3 377 59.7
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 6.3e-126 454.9 377 59.7
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 8.2e-126 454.5 380 60.8
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 3.1e-125 452.6 383 57.7
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 9.1e-125 451.1 367 61.0
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 9.1e-125 451.1 377 59.2
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 9.1e-125 451.1 377 59.7
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 9.1e-125 451.1 377 59.2
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 4.5e-124 448.7 377 59.2
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 4.5e-124 448.7 377 59.4
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 4.5e-124 448.7 377 59.2
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 4.5e-124 448.7 377 59.2
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 1.3e-123 447.2 380 59.7
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 1.7e-123 446.8 377 59.4
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 2.2e-123 446.4 368 60.6
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 2.2e-123 446.4 377 59.2
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 3.8e-123 445.7 377 58.6
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 5.0e-123 445.3 377 58.6
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.9e-122 443.4 375 58.9
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 9.4e-122 441.0 364 62.1
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 8.8e-120 434.5 377 58.1
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 1.1e-119 434.1 388 55.7
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 1.1e-119 434.1 365 59.5
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 3.3e-119 432.6 363 57.0
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 1.8e-117 426.8 422 52.1
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 1.8e-117 426.8 380 57.9
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 7.0e-117 424.9 544 46.0
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 1.5e-116 423.7 389 56.0
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 5.9e-116 421.8 377 56.2
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 1.1e-114 417.5 389 56.0
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 2.5e-114 416.4 389 55.0
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 4.4e-111 405.6 390 53.6
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 1.2e-108 397.5 369 56.4
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 7.2e-106 388.3 372 54.6
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 1.5e-103 380.6 275 66.2
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 3.2e-98 362.8 383 50.9
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 7.5e-95 351.7 351 51.6
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 2.5e-90 336.7 367 46.3
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 9.5e-90 334.7 380 44.7
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 8.0e-89 331.6 377 49.3
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 2.3e-88 330.1 373 44.8
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.4e-85 320.9 242 66.9
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 2.8e-81 306.6 364 42.9
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 3.4e-71 273.1 269 54.6
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 5.8e-71 272.3 439 36.0
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 5.1e-51 206.1 248 46.4
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 2.4e-45 187.2 175 54.9
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 3.0e-43 180.3 129 68.2
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 1.1e-37 161.8 124 58.9
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 4.6e-36 156.4 159 51.6
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.5e-34 151.4 177 49.7
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 1.1e-29 135.2 257 32.3
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 1.4e-29 134.8 110 57.3
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 6.7e-27 125.9 101 64.4
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 8.2e-25 119.0 99 56.6
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.4e-24 118.2 86 65.1
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 2.0e-23 114.4 92 67.4
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 3.4e-23 113.6 92 67.4
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 3.9e-19 100.1 394 26.1
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 1.5e-18 98.2 81 56.8
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.3e-18 96.7 98 63.3
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 5.0e-14 83.2 131 40.5
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 6.5e-14 82.8 71 54.9
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 7.9e-12 75.9 48 75.0
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 5.7e-10 69.7 62 54.8
MELO3C018376.2 Cucumis melo HOM05D003877 ORTHO05D004647 1.7e-09 68.2 45 64.4
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 2.4e-08 64.3 88 47.7
Lsat_1_v5_gn_6_23680 Lactuca sativa HOM05D001176 ORTHO05D014361 2.6e-07 60.8 59 54.2


User provided reference genes

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