Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 4.4e-107 391.3 204 100.0
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 6.4e-106 387.5 204 99.0
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 3.3e-94 348.6 202 88.6
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.3e-90 336.7 201 86.6
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 1.4e-89 333.2 204 84.3
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 1.4e-89 333.2 204 83.8
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 2.1e-88 329.3 201 83.1
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 6.0e-88 327.8 202 81.2
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 1.7e-87 326.2 202 80.7
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 3.9e-87 325.1 202 82.2
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 1.5e-86 323.2 202 82.2
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 1.9e-86 322.8 200 82.0
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 4.3e-86 321.6 201 81.1
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 7.3e-86 320.9 198 81.8
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 9.5e-86 320.5 202 80.2
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 9.5e-86 320.5 202 80.2
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 1.2e-85 320.1 202 77.2
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 1.6e-85 319.7 204 78.9
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 1.6e-85 319.7 202 82.2
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 2.1e-85 319.3 204 78.9
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 6.2e-85 317.8 203 78.8
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 1.4e-84 316.6 201 80.6
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 3.1e-84 315.5 202 80.2
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 6.8e-84 314.3 204 77.9
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 1.2e-83 313.5 202 78.7
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 2.6e-83 312.4 202 79.2
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 2.6e-83 312.4 202 78.7
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 4.4e-83 311.6 204 77.9
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 4.4e-83 311.6 202 79.2
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 5.8e-83 311.2 200 79.5
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 1.3e-82 310.1 202 76.7
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.3e-82 310.1 200 79.0
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 2.2e-82 309.3 204 77.0
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 2.9e-82 308.9 198 78.8
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 4.9e-82 308.1 198 76.3
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 8.4e-82 307.4 192 78.6
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 8.4e-82 307.4 200 76.5
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 8.4e-82 307.4 202 78.7
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 8.4e-82 307.4 198 76.3
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 1.9e-81 306.2 195 79.5
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 1.9e-81 306.2 195 79.5
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 2.4e-81 305.8 198 75.8
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 2.4e-81 305.8 202 77.7
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 2.4e-81 305.8 201 76.1
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 5.4e-81 304.7 204 77.9
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 9.2e-81 303.9 195 79.0
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 1.6e-80 303.1 195 78.5
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 1.6e-80 303.1 195 78.5
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 3.5e-80 302.0 200 77.0
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 4.6e-80 301.6 200 78.5
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 6.0e-80 301.2 200 76.0
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 1.0e-79 300.4 198 75.8
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 2.3e-79 299.3 202 74.8
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 2.3e-79 299.3 202 73.3
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 3.0e-79 298.9 198 76.3
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 3.0e-79 298.9 198 76.8
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 3.0e-79 298.9 204 74.5
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 3.9e-79 298.5 198 76.3
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 3.9e-79 298.5 201 75.1
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 3.9e-79 298.5 201 75.1
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 5.1e-79 298.1 197 77.7
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 6.6e-79 297.7 202 74.8
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 1.1e-78 297.0 198 75.8
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.5e-78 296.6 200 76.5
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 1.5e-78 296.6 191 79.6
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 1.5e-78 296.6 198 77.3
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 9.6e-78 293.9 202 73.8
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 9.6e-78 293.9 202 74.3
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 9.6e-78 293.9 205 72.7
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 1.2e-77 293.5 192 74.5
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 1.2e-77 293.5 202 72.3
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 1.2e-77 293.5 202 72.3
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 1.2e-77 293.5 202 72.3
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 1.2e-77 293.5 202 72.3
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.2e-77 293.5 200 75.5
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 1.2e-77 293.5 202 75.7
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 2.1e-77 292.7 202 72.3
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 4.7e-77 291.6 202 71.8
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 6.2e-77 291.2 195 76.4
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 1.1e-76 290.4 201 76.6
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.4e-76 290.0 200 73.5
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 3.1e-76 288.9 201 75.1
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 3.1e-76 288.9 198 73.7
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 4.0e-76 288.5 201 76.1
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 1.2e-75 287.0 332 52.7
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 5.8e-75 284.6 182 80.2
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 7.6e-75 284.3 181 79.6
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 9.9e-75 283.9 195 73.8
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.3e-74 283.5 210 70.5
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 1.3e-74 283.5 200 70.5
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 1.7e-74 283.1 201 73.6
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 2.2e-74 282.7 202 70.3
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 2.9e-74 282.3 201 72.6
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 4.9e-74 281.6 200 70.5
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 4.9e-74 281.6 199 71.4
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 1.4e-73 280.0 198 72.7
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 1.4e-73 280.0 198 72.2
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 1.9e-73 279.6 196 73.0
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 1.9e-73 279.6 197 72.1
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 4.6e-72 275.0 200 70.5
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 6.0e-72 274.6 204 71.6
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 5.1e-71 271.6 198 72.7
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 5.1e-71 271.6 200 68.0
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 8.7e-71 270.8 200 69.5
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.9e-70 269.6 200 71.5
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 4.3e-70 268.5 181 75.1
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 5.6e-70 268.1 184 74.5
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 5.6e-70 268.1 198 67.7
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 4.0e-68 261.9 184 69.0
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 1.5e-67 260.0 177 73.4
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 2.6e-67 259.2 254 60.2
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 4.4e-67 258.5 198 68.2
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 7.6e-67 257.7 181 72.9
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 9.9e-67 257.3 193 64.8
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 4.9e-66 255.0 199 67.3
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 2.4e-65 252.7 175 74.3
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 1.6e-64 250.0 168 79.2
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 3.9e-63 245.4 217 61.3
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 6.6e-63 244.6 238 59.7
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 4.5e-59 231.9 220 59.1
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 7.1e-57 224.6 235 56.6
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 3.3e-54 215.7 167 68.9
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 2.8e-53 212.6 225 56.4
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 9.0e-52 207.6 190 56.3
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 1.2e-51 207.2 198 54.0
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 5.8e-51 204.9 112 90.2
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 3.2e-49 199.1 128 80.5
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 8.7e-47 191.0 192 54.2
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 5.3e-44 181.8 112 76.8
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 9.0e-44 181.0 146 67.1
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 2.5e-41 172.9 119 71.4
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 1.3e-39 167.2 180 51.1
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 6.7e-39 164.9 194 47.9
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 9.7e-38 161.0 83 95.2
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 2.8e-37 159.5 83 94.0
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 2.0e-35 153.3 112 68.8
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 4.5e-35 152.1 166 51.8
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 2.7e-32 142.9 88 75.0
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 1.0e-31 141.0 85 80.0
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 5.7e-30 135.2 89 77.5
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 3.7e-29 132.5 103 66.0
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 1.4e-28 130.6 204 39.7
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 2.6e-27 126.3 209 39.7
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 2.2e-26 123.2 80 75.0
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 9.4e-25 117.9 126 53.2
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 2.1e-24 116.7 130 52.3
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 6.1e-24 115.2 103 63.1
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 3.9e-23 112.5 73 82.2
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.0e-19 100.1 72 69.4
PRCOL_00002884 Prasinoderma coloniale HOM05D004366 ORTHO05D005058 2.0e-19 100.1 197 35.0
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 7.7e-19 98.2 77 62.3
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 1.7e-18 97.1 77 63.6
C08p04780 Brassica napus HOM05D004366 ORTHO05D005058 2.2e-18 96.7 73 64.4
arahy.Tifrunner.gnm1.ann1.8CQ436 Arachis hypogaea HOM05D004366 ORTHO05D005058 6.5e-18 95.1 68 70.6
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 2.5e-17 93.2 105 48.6
BolC8t47277H Brassica oleracea HOM05D004366 ORTHO05D005058 4.2e-17 92.4 78 61.5
arahy.Tifrunner.gnm1.ann1.NKT7G2 Arachis hypogaea HOM05D004366 ORTHO05D005058 4.7e-16 89.0 112 49.1
Cre05.g244850 Chlamydomonas reinhardtii HOM05D004366 ORTHO05D005058 1.8e-15 87.0 195 32.8
SalBow1G5797 Salvia bowleyana HOM05D004366 ORTHO05D005058 6.3e-13 78.6 45 80.0
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 5.9e-11 72.0 49 67.3
AUR62028525 Chenopodium quinoa HOM05D004366 ORTHO05D000022 1.9e-09 67.0 44 72.7
PSO339G3282 Papaver somniferum HOM05D000073 ORTHO05D000033 5.5e-09 65.5 52 63.5
TAR624G1239 Trochodendron aralioides HOM05D049658 ORTHO05D051498 1.0e-07 61.2 42 76.2
Atru.chr9.1643 Acer truncatum HOM05D004366 ORTHO05D005058 5.2e-07 58.9 45 62.2
A08p04480 Brassica napus HOM05D004366 ORTHO05D005058 6.8e-07 58.5 72 43.1
TAR626G1697 Trochodendron aralioides HOM05D049658 ORTHO05D051498 8.8e-07 58.2 40 77.5
BraA08t32473Z Brassica rapa HOM05D004366 ORTHO05D005058 4.4e-06 55.8 42 59.5


User provided reference genes

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