Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.3e-44 182.6 85 100.0
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.3e-40 166.8 85 91.8
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.0e-37 158.7 85 88.2
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.2e-34 149.4 76 92.1
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.0e-34 147.1 76 89.5
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.0e-34 147.1 76 89.5
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.0e-34 147.1 76 90.8
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.6e-31 139.0 68 94.1
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 3.7e-31 137.9 76 84.2
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 4.0e-30 134.4 76 81.6
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 1.2e-29 132.9 76 81.6
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 1.2e-29 132.9 76 81.6
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 4.5e-29 131.0 74 79.7
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 5.8e-29 130.6 76 78.9
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 9.9e-29 129.8 76 78.9
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 2.9e-28 128.3 76 76.3
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 6.4e-28 127.1 76 76.3
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 1.1e-27 126.3 76 77.6
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 1.4e-27 125.9 74 74.3
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.9e-27 125.6 76 75.0
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.9e-27 125.6 76 76.3
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 2.4e-27 125.2 74 73.0
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 2.4e-27 125.2 76 72.4
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 3.2e-27 124.8 74 78.4
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 3.2e-27 124.8 76 77.6
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 3.2e-27 124.8 74 77.0
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 7.1e-27 123.6 76 75.0
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 7.1e-27 123.6 76 71.1
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 9.3e-27 123.2 76 75.0
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 9.3e-27 123.2 76 76.3
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 1.2e-26 122.9 76 73.7
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.6e-26 122.5 76 72.4
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.6e-26 122.5 76 72.4
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 2.7e-26 121.7 76 71.1
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 3.5e-26 121.3 74 71.6
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.5e-26 121.3 74 71.6
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.5e-26 121.3 74 71.6
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 3.5e-26 121.3 74 74.3
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 4.6e-26 120.9 76 73.7
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 4.6e-26 120.9 76 72.4
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 4.6e-26 120.9 76 72.4
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 4.6e-26 120.9 76 72.4
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 4.6e-26 120.9 76 69.7
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 6.0e-26 120.6 74 75.7
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 6.0e-26 120.6 76 72.4
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 6.0e-26 120.6 76 71.1
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 6.0e-26 120.6 76 72.4
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 7.9e-26 120.2 76 71.1
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 7.9e-26 120.2 76 72.4
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.3e-25 119.4 74 70.3
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.8e-25 119.0 76 71.1
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 1.8e-25 119.0 76 71.1
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 1.8e-25 119.0 76 71.1
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 1.8e-25 119.0 76 71.1
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 1.8e-25 119.0 76 71.1
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 1.8e-25 119.0 76 71.1
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 1.8e-25 119.0 76 71.1
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 2.3e-25 118.6 74 70.3
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 2.3e-25 118.6 74 71.6
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 2.3e-25 118.6 74 71.6
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 3.0e-25 118.2 76 69.7
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 3.0e-25 118.2 76 71.1
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 3.0e-25 118.2 76 71.1
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 3.0e-25 118.2 76 71.1
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 3.0e-25 118.2 76 69.7
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 3.9e-25 117.9 76 69.7
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 3.9e-25 117.9 74 73.0
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 5.1e-25 117.5 74 70.3
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 6.7e-25 117.1 76 69.7
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 6.7e-25 117.1 74 73.0
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 6.7e-25 117.1 76 69.7
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 8.7e-25 116.7 76 69.7
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 8.7e-25 116.7 76 69.7
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 8.7e-25 116.7 76 69.7
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 8.7e-25 116.7 76 68.4
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 1.1e-24 116.3 76 64.5
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 1.9e-24 115.5 76 69.7
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 1.9e-24 115.5 76 69.7
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 1.9e-24 115.5 76 65.8
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 1.9e-24 115.5 76 69.7
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 2.5e-24 115.2 76 68.4
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 3.3e-24 114.8 76 68.4
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 3.3e-24 114.8 78 66.7
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 3.3e-24 114.8 76 68.4
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 5.6e-24 114.0 74 70.3
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 7.4e-24 113.6 76 67.1
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 7.4e-24 113.6 76 68.4
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 1.3e-23 112.8 76 67.1
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 1.3e-23 112.8 76 67.1
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 1.3e-23 112.8 76 67.1
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 1.3e-23 112.8 76 67.1
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 1.3e-23 112.8 76 68.4
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 1.3e-23 112.8 76 65.8
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 1.3e-23 112.8 76 67.1
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 1.6e-23 112.5 76 65.8
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 1.6e-23 112.5 76 65.8
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 1.6e-23 112.5 74 67.6
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 1.6e-23 112.5 74 68.9
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 1.6e-23 112.5 78 65.4
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 1.6e-23 112.5 76 67.1
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 1.6e-23 112.5 76 64.5
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 2.1e-23 112.1 80 61.2
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.1e-23 112.1 76 68.4
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 2.1e-23 112.1 76 67.1
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 2.8e-23 111.7 76 67.1
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 2.8e-23 111.7 74 66.2
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 3.7e-23 111.3 76 67.1
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 3.7e-23 111.3 76 68.4
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 3.7e-23 111.3 76 65.8
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 6.2e-23 110.5 76 63.2
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 8.2e-23 110.2 76 65.8
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 8.2e-23 110.2 76 65.8
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 1.1e-22 109.8 71 67.6
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 1.8e-22 109.0 74 63.5
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 2.4e-22 108.6 76 64.5
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.4e-22 108.6 76 65.8
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 2.4e-22 108.6 74 64.9
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 2.4e-22 108.6 74 64.9
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 3.1e-22 108.2 74 66.2
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 4.0e-22 107.8 76 64.5
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 4.0e-22 107.8 76 63.2
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 4.0e-22 107.8 76 63.2
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 4.0e-22 107.8 76 63.2
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 6.9e-22 107.1 76 61.8
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 9.0e-22 106.7 76 64.5
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 1.2e-21 106.3 76 61.8
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 1.2e-21 106.3 76 63.2
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 1.2e-21 106.3 76 63.2
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 2.0e-21 105.5 74 64.9
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 3.4e-21 104.8 76 59.2
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 3.4e-21 104.8 76 59.2
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 1.0e-20 103.2 76 61.8
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 1.0e-20 103.2 76 61.8
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 1.0e-20 103.2 76 61.8
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.0e-20 103.2 76 61.8
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 1.3e-20 102.8 74 59.5
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.3e-20 102.8 74 62.2
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 2.2e-20 102.1 74 67.6
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 6.5e-20 100.5 76 59.2
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 8.4e-20 100.1 74 63.5
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.9e-19 99.0 76 67.1
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 7.1e-19 97.1 74 58.1
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 2.1e-18 95.5 71 59.2
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 6.0e-18 94.0 76 55.3
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 3.0e-17 91.7 74 59.5
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 4.1e-14 81.3 76 48.7
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 1.3e-12 76.3 62 59.7
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 1.1e-11 73.2 74 41.9
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 1.9e-11 72.4 72 45.8
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 4.2e-11 71.2 77 44.2
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 1.4e-09 66.2 73 38.4
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 1.4e-06 56.2 67 41.8


User provided reference genes

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