Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003387 Camellia sinensis var. sinensis HOM05D005663 ORTHO05D007258 5.0e-71 271.6 201 100.0
CSS0035922 Camellia sinensis var. sinensis HOM05D005663 ORTHO05D007258 3.5e-64 248.8 249 80.7
Prupe.6G163100 Prunus persica HOM05D005663 ORTHO05D007258 1.4e-33 147.1 159 52.8
Actinidia06667 Actinidia chinensis HOM05D005663 ORTHO05D007258 4.1e-33 145.6 193 47.2
RcHm_v2.0_Chr2g0119121 Rosa chinensis HOM05D005663 ORTHO05D007258 2.7e-32 142.9 192 46.4
Lj4A856T34 Lonicera japonica HOM05D005663 ORTHO05D007258 1.7e-31 140.2 154 52.6
CANSAT01G3211 Cannabis sativa HOM05D005663 ORTHO05D007258 2.3e-31 139.8 157 51.6
arahy.Tifrunner.gnm1.ann1.6JE7GZ Arachis hypogaea HOM05D005663 ORTHO05D007258 3.0e-31 139.4 153 51.0
FvH4_1g23570 Fragaria vesca HOM05D005663 ORTHO05D007258 8.6e-31 137.9 191 45.0
FAN26G2344 Fragaria x ananassa HOM05D005663 ORTHO05D007258 8.6e-31 137.9 191 45.0
vmacro18658 Vaccinium macrocarpon HOM05D005663 ORTHO05D007258 2.5e-30 136.3 193 45.1
arahy.Tifrunner.gnm1.ann1.67XQRG Arachis hypogaea HOM05D005663 ORTHO05D007258 4.3e-30 135.6 153 49.7
Hma1.2p1_0006F.1_g004880 Hydrangea macrophylla HOM05D005663 ORTHO05D007258 9.5e-30 134.4 193 43.5
DCAR_027256 Daucus carota HOM05D005663 ORTHO05D007258 4.7e-29 132.1 167 46.7
Manes.13G086600 Manihot esculenta HOM05D005663 ORTHO05D007258 6.2e-29 131.7 201 40.8
arahy.Tifrunner.gnm1.ann1.ILAW0V Arachis hypogaea HOM05D005663 ORTHO05D007258 1.8e-28 130.2 153 47.7
QL06p051868 Quercus lobata HOM05D005663 ORTHO05D007258 2.4e-28 129.8 188 42.6
SalBow2G3104 Salvia bowleyana HOM05D005663 ORTHO05D007258 8.9e-28 127.9 183 43.7
TPR.G2176 Trifolium pratense HOM05D005663 ORTHO05D007258 1.2e-27 127.5 187 41.2
GSVIVG01026586001 Vitis vinifera HOM05D005663 ORTHO05D007258 1.2e-27 127.5 186 41.9
Haze_25191 Corylus avellana HOM05D005663 ORTHO05D007258 1.5e-27 127.1 184 42.4
Psat7g048760 Pisum sativum HOM05D005663 ORTHO05D007258 1.5e-27 127.1 192 40.6
Lsat_1_v5_gn_4_138241 Lactuca sativa HOM05D005663 ORTHO05D007258 3.4e-27 125.9 198 39.9
Medtr8g092680 Medicago truncatula HOM05D005663 ORTHO05D007258 3.4e-27 125.9 187 41.2
CiPaw.03G123800 Carya illinoinensis HOM05D005663 ORTHO05D007258 4.4e-27 125.6 189 42.3
Haze_25195 Corylus avellana HOM05D005663 ORTHO05D007258 4.4e-27 125.6 187 41.7
FAN19G1272 Fragaria x ananassa HOM05D005663 ORTHO05D007258 4.4e-27 125.6 223 38.6
Ciclev10026263m.g Citrus clementina HOM05D005663 ORTHO05D007258 7.6e-27 124.8 188 42.6
Eucgr.I00244 Eucalyptus grandis HOM05D005663 ORTHO05D007258 7.6e-27 124.8 187 42.2
Glyma.08G146300 Glycine max HOM05D005663 ORTHO05D007258 7.6e-27 124.8 187 40.1
Nn5g28726 Nelumbo nucifera HOM05D005663 ORTHO05D007258 7.6e-27 124.8 191 41.4
Potri.001G309300 Populus trichocarpa HOM05D005663 ORTHO05D007258 7.6e-27 124.8 191 41.9
Atru.chr4.540 Acer truncatum HOM05D005663 ORTHO05D007258 9.9e-27 124.4 183 43.2
Thecc.01G121000 Theobroma cacao HOM05D005663 ORTHO05D007258 1.3e-26 124.0 199 40.7
Migut.H01114 Erythranthe guttata HOM05D005663 ORTHO05D007258 2.2e-26 123.2 187 43.3
Glyma.05G188200 Glycine max HOM05D005663 ORTHO05D007258 2.2e-26 123.2 187 40.1
HanXRQChr15g0490251 Helianthus annuus HOM05D005663 ORTHO05D007258 2.2e-26 123.2 194 39.2
Nitab4.5_0002064g0060 Nicotiana tabacum HOM05D005663 ORTHO05D007258 2.2e-26 123.2 204 41.2
Duzib264G0763 Durio zibethinus HOM05D005663 ORTHO05D007258 2.9e-26 122.9 187 41.7
MD15G1343200 Malus domestica HOM05D005663 ORTHO05D007258 3.8e-26 122.5 189 41.8
ECA238G2757 Erigeron canadensis HOM05D005663 ORTHO05D007258 4.9e-26 122.1 191 39.8
Thecc.01G121200 Theobroma cacao HOM05D005663 ORTHO05D007258 6.4e-26 121.7 157 45.2
Phvul.002G269000 Phaseolus vulgaris HOM05D005663 ORTHO05D007258 1.4e-25 120.6 187 39.6
MBI09_g18623_MAGBIO Magnolia biondii HOM05D005663 ORTHO05D007258 1.9e-25 120.2 186 40.9
PSO541G2505 Papaver somniferum HOM05D005663 ORTHO05D007258 3.2e-25 119.4 184 41.3
Ah.03g146600 Amaranthus hybridus HOM05D005663 ORTHO05D007258 4.2e-25 119.0 141 48.2
Gohir.A06G149400 Gossypium hirsutum HOM05D005663 ORTHO05D007258 5.4e-25 118.6 188 39.9
Gorai.010G181700 Gossypium raimondii HOM05D005663 ORTHO05D007258 7.1e-25 118.2 188 39.9
VMungo0251G2076 Vigna mungo HOM05D005663 ORTHO05D007258 7.1e-25 118.2 188 38.8
MBI09_g20114_MAGBIO Magnolia biondii HOM05D005663 ORTHO05D007258 1.2e-24 117.5 186 40.9
TWI75G0275 Tripterygium wilfordii HOM05D005663 ORTHO05D007258 1.6e-24 117.1 191 39.8
PSO675G3544 Papaver somniferum HOM05D005663 ORTHO05D007258 2.1e-24 116.7 184 40.8
Aqoxy3G02633 Aquilegia oxysepala HOM05D005663 ORTHO05D007258 3.5e-24 115.9 188 38.8
Gorai.002G151300 Gossypium raimondii HOM05D005663 ORTHO05D007258 4.6e-24 115.5 187 40.1
unitig_899.g14706 Utricularia gibba HOM05D005663 ORTHO05D007258 4.6e-24 115.5 183 40.4
Hund03480 Selenicereus undatus HOM05D005663 ORTHO05D007258 1.3e-23 114.0 188 38.3
EL10Ac6g15254 Beta vulgaris HOM05D005663 ORTHO05D007258 3.0e-23 112.8 153 43.1
Nitab4.5_0009320g0020 Nicotiana tabacum HOM05D005663 ORTHO05D007258 3.0e-23 112.8 208 38.0
Cc07_g17370 Coffea canephora HOM05D005663 ORTHO05D007258 1.1e-22 110.9 183 38.3
Solyc11g005340.3 Solanum lycopersicum HOM05D005663 ORTHO05D007258 1.5e-22 110.5 191 39.8
SGA_v2.0_scaffold137G35114 Striga asiatica HOM05D005663 ORTHO05D007258 1.5e-22 110.5 201 39.3
Lj4g0014342 Lotus japonicus HOM05D005663 ORTHO05D007258 3.3e-22 109.4 216 35.2
Sopen11g001350 Solanum pennellii HOM05D005663 ORTHO05D007258 4.3e-22 109.0 191 39.8
Zm00001eb083210 Zea mays HOM05D005663 ORTHO05D007258 4.3e-22 109.0 190 36.8
arahy.Tifrunner.gnm1.ann1.SHST7E Arachis hypogaea HOM05D005663 ORTHO05D007258 1.6e-21 107.1 131 47.3
Os04g0422000 Oryza sativa ssp. japonica HOM05D005663 ORTHO05D007258 1.6e-21 107.1 191 35.6
RcHm_v2.0_Chr2g0119061 Rosa chinensis HOM05D005663 ORTHO05D007258 1.6e-21 107.1 150 43.3
AL6G20230 Arabidopsis lyrata HOM05D005663 ORTHO05D007258 2.8e-21 106.3 191 37.2
CDE12G0169 Ceratophyllum demersum HOM05D005663 ORTHO05D007258 6.2e-21 105.1 187 36.9
Dinv15112 Davidia involucrata HOM05D005663 ORTHO05D007258 6.2e-21 105.1 59 84.7
AT5G09820 Arabidopsis thaliana HOM05D005663 ORTHO05D007258 8.1e-21 104.8 191 36.6
CDE04G2754 Ceratophyllum demersum HOM05D005663 ORTHO05D007258 1.1e-20 104.4 187 36.9
PGSC0003DMG400003986 Solanum tuberosum HOM05D005663 ORTHO05D007258 1.4e-20 104.0 175 40.0
A03p04280 Brassica napus HOM05D005663 ORTHO05D007258 1.8e-20 103.6 192 35.4
Carub.0006s0824 Capsella rubella HOM05D005663 ORTHO05D007258 1.8e-20 103.6 190 36.3
Mapoly0058s0022 Marchantia polymorpha HOM05D005663 ORTHO05D007258 2.4e-20 103.2 184 35.3
Aa31LG3G17290 Aethionema arabicum HOM05D005663 ORTHO05D007258 6.9e-20 101.7 186 34.4
Duzib147G1259 Durio zibethinus HOM05D005663 ORTHO05D007258 6.9e-20 101.7 190 35.3
BolC3t13007H Brassica oleracea HOM05D005663 ORTHO05D007258 9.0e-20 101.3 192 34.4
BraA03t09772Z Brassica rapa HOM05D005663 ORTHO05D007258 9.0e-20 101.3 191 35.1
CARHR203580 Cardamine hirsuta HOM05D005663 ORTHO05D007258 1.5e-19 100.5 190 36.3
Pp3c3_12020 Physcomitrium patens HOM05D005663 ORTHO05D007258 2.0e-19 100.1 184 34.8
SEGI_39378 Sequoiadendron giganteum HOM05D005663 ORTHO05D007258 5.8e-19 98.6 184 34.8
FAN28G2344 Fragaria x ananassa HOM05D005663 ORTHO05D007258 7.6e-19 98.2 55 81.8
Sp6g33590 Schrenkiella parvula HOM05D005663 ORTHO05D007258 1.3e-18 97.4 191 35.1
Thhalv10014407m.g Eutrema salsugineum HOM05D005663 ORTHO05D007258 1.7e-18 97.1 186 34.9
HPP92_016149 Vanilla planifolia HOM05D005663 ORTHO05D007258 2.9e-18 96.3 192 35.4
Haze_25187 Corylus avellana HOM05D005663 ORTHO05D007258 6.4e-18 95.1 165 38.2
Lalb_Chr12g0203341 Lupinus albus HOM05D005663 ORTHO05D007258 6.4e-18 95.1 52 80.8
THA.LOC104818465 Tarenaya hassleriana HOM05D005663 ORTHO05D007258 5.4e-17 92.0 197 33.5
Dinv09933 Davidia involucrata HOM05D005663 ORTHO05D007258 4.6e-16 89.0 62 71.0
TAR625G0848 Trochodendron aralioides HOM05D005663 ORTHO05D007258 1.3e-15 87.4 168 36.9
PGR119G0285 Punica granatum HOM05D005663 ORTHO05D007258 1.7e-15 87.0 165 36.4
arahy.Tifrunner.gnm1.ann1.2XR3X5 Arachis hypogaea HOM05D005663 ORTHO05D007258 2.3e-15 86.7 130 44.6
FAN23G0034 Fragaria x ananassa HOM05D005663 ORTHO05D007258 5.1e-15 85.5 61 70.5
Oeu047646.1 Olea europaea HOM05D005663 ORTHO05D007258 1.9e-14 83.6 182 35.2
SMO358G0575 Selaginella moellendorffii HOM05D005663 ORTHO05D007258 9.6e-14 81.3 52 67.3
Rhsim08G0003400 Rhododendron simsii HOM05D005663 ORTHO05D007258 1.3e-13 80.9 61 65.6
COL.COLO4_22418 Corchorus olitorius HOM05D005663 ORTHO05D007258 8.1e-13 78.2 61 62.3
TAR381G0497 Trochodendron aralioides HOM05D005663 ORTHO05D007258 2.4e-12 76.6 61 62.3
COL.COLO4_22420 Corchorus olitorius HOM05D005663 ORTHO05D007258 3.1e-12 76.3 65 61.5
Ca_17664_v3 Cicer arietinum L. HOM05D005663 ORTHO05D007258 9.0e-12 74.7 60 60.0
Lalb_Chr12g0203331 Lupinus albus HOM05D005663 ORTHO05D007258 1.5e-11 73.9 60 58.3
arahy.Tifrunner.gnm1.ann1.3896ZX Arachis hypogaea HOM05D005663 ORTHO05D007258 2.6e-11 73.2 60 60.0
arahy.Tifrunner.gnm1.ann1.YJV2YZ Arachis hypogaea HOM05D005663 ORTHO05D007258 4.5e-11 72.4 53 66.0
CAN.G249.7 Capsicum annuum HOM05D005663 ORTHO05D007258 4.5e-11 72.4 61 60.7
Gohir.D06G155500 Gossypium hirsutum HOM05D005663 ORTHO05D007258 7.6e-11 71.6 61 57.4
Cpa.g.c33395.2 Carica papaya HOM05D005663 ORTHO05D007258 9.9e-11 71.2 65 55.4
Peaxi162Scf00025g02122 Petunia axillaris HOM05D005663 ORTHO05D007258 9.9e-11 71.2 65 58.5
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 9.9e-11 71.2 48 60.4
Cre03.g188700 Chlamydomonas reinhardtii HOM05D005663 ORTHO05D007258 1.7e-10 70.5 190 28.4
C03p04720 Brassica napus HOM05D005663 ORTHO05D007258 2.2e-10 70.1 65 56.9
Sabra16G0195100 Salix brachista HOM05D005663 ORTHO05D007258 2.2e-10 70.1 61 59.0
FAN19G2811 Fragaria x ananassa HOM05D005663 ORTHO05D007258 2.9e-10 69.7 39 82.1
arahy.Tifrunner.gnm1.ann1.4DFA8P Arachis hypogaea HOM05D005663 ORTHO05D007258 4.9e-10 68.9 52 63.5
Atru.chr4.1055 Acer truncatum HOM05D005663 ORTHO05D007258 1.1e-09 67.8 58 60.3
FvH4_1g28530 Fragaria vesca HOM05D005663 ORTHO05D007258 1.4e-09 67.4 38 81.6
Atru.chr4.1044 Acer truncatum HOM05D005663 ORTHO05D007258 1.9e-09 67.0 58 58.6
Sc03g0004740 Simmondsia chinensis HOM05D005663 ORTHO05D007258 2.4e-09 66.6 60 51.7
MD01G1001300 Malus domestica HOM05D005663 ORTHO05D007258 2.1e-08 63.5 51 62.7
arahy.Tifrunner.gnm1.ann1.B1HTRM Arachis hypogaea HOM05D005663 ORTHO05D007258 3.5e-08 62.8 60 56.7


User provided reference genes

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