Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 5.6e-178 627.5 313 100.0
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 6.2e-177 624.0 313 99.4
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 1.9e-146 522.7 316 83.2
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 1.6e-145 519.6 313 82.1
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 5.3e-144 514.6 318 81.4
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 6.0e-140 501.1 313 78.6
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 7.9e-140 500.7 332 76.2
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 5.9e-135 484.6 316 74.4
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 3.0e-131 472.2 313 73.8
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 5.7e-130 468.0 313 73.2
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 5.7e-130 468.0 312 72.4
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 2.2e-129 466.1 308 75.3
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 1.4e-128 463.4 316 71.8
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 2.4e-128 462.6 309 73.8
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 4.1e-128 461.8 310 70.3
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 9.1e-128 460.7 313 71.6
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 9.1e-128 460.7 313 71.6
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 1.2e-127 460.3 360 64.2
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 1.5e-127 459.9 313 71.9
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 1.5e-127 459.9 313 71.9
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 2.6e-127 459.1 313 71.9
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 3.4e-127 458.8 316 72.8
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 3.4e-127 458.8 308 71.1
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 4.5e-127 458.4 308 74.0
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 4.5e-127 458.4 316 70.9
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 7.7e-127 457.6 316 70.9
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 1.4e-125 453.4 317 69.7
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 1.6e-124 449.9 303 73.3
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 4.7e-124 448.4 313 69.6
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 1.4e-123 446.8 316 70.6
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 2.3e-123 446.0 316 70.3
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 3.0e-123 445.7 314 70.1
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 1.1e-122 443.7 315 68.3
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 1.1e-122 443.7 316 70.3
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 5.7e-122 441.4 310 68.4
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 1.3e-121 440.3 316 70.3
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 4.8e-121 438.3 301 73.8
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 4.1e-120 435.3 313 69.0
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 1.5e-119 433.3 312 67.3
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 2.0e-119 433.0 281 76.9
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 5.9e-119 431.4 311 66.6
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 1.3e-118 430.3 314 67.8
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 1.3e-118 430.3 314 66.2
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.9e-118 429.1 315 67.0
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 3.8e-118 428.7 310 67.4
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 5.0e-118 428.3 312 67.6
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 5.0e-118 428.3 315 67.3
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 6.5e-118 427.9 310 66.5
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 1.9e-117 426.4 310 65.8
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 5.5e-117 424.9 325 64.3
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 1.2e-116 423.7 310 67.7
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 2.1e-116 422.9 310 65.2
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 8.0e-116 421.0 283 73.5
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 1.0e-115 420.6 318 67.0
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 2.3e-115 419.5 312 65.4
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 8.8e-115 417.5 310 66.1
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 8.8e-115 417.5 310 66.1
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 1.1e-114 417.2 310 64.5
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 1.5e-114 416.8 307 67.4
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 2.6e-114 416.0 307 67.4
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 4.4e-114 415.2 279 73.1
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 9.7e-114 414.1 294 68.4
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 9.7e-114 414.1 312 65.7
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 3.7e-113 412.1 296 70.6
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 4.8e-113 411.8 310 66.8
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 1.1e-112 410.6 282 71.6
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 1.8e-112 409.8 314 64.3
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 1.8e-112 409.8 316 67.4
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 4.1e-112 408.7 275 71.6
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 1.6e-111 406.8 280 67.1
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 1.3e-110 403.7 308 65.9
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 1.3e-110 403.7 314 65.9
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 6.5e-110 401.4 315 64.4
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 6.5e-110 401.4 307 64.2
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 1.2e-108 397.1 310 64.5
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 2.1e-108 396.4 327 59.9
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 3.6e-108 395.6 311 64.3
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 8.0e-108 394.4 330 59.4
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 1.8e-107 393.3 326 62.0
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 4.0e-107 392.1 311 63.7
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 1.5e-106 390.2 276 68.8
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 4.1e-104 382.1 233 82.0
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 4.1e-104 382.1 240 79.6
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 9.1e-104 380.9 276 68.5
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 2.7e-103 379.4 282 65.6
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 1.3e-102 377.1 320 57.5
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 9.4e-101 370.9 314 59.2
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 1.0e-99 367.5 312 62.2
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 2.0e-98 363.2 307 60.3
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 2.6e-98 362.8 240 74.2
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 7.5e-98 361.3 277 64.6
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 7.5e-98 361.3 312 58.7
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 1.3e-97 360.5 313 60.7
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 3.1e-96 355.9 312 58.3
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 3.1e-96 355.9 307 59.6
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 7.0e-96 354.8 312 58.0
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 7.0e-96 354.8 310 59.7
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 7.0e-96 354.8 307 58.6
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 9.1e-96 354.4 312 58.0
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 9.1e-96 354.4 311 58.5
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 1.2e-95 354.0 312 58.0
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 3.5e-95 352.4 312 57.7
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 1.0e-94 350.9 312 57.4
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 2.3e-94 349.7 307 58.6
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 2.3e-94 349.7 307 58.6
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 5.0e-94 348.6 312 57.4
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 6.6e-94 348.2 312 56.4
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 6.6e-94 348.2 307 58.3
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 6.6e-94 348.2 307 58.3
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 1.5e-93 347.1 253 66.4
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 2.5e-93 346.3 307 58.3
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 2.5e-93 346.3 275 64.7
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 7.5e-90 334.7 299 57.9
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 7.5e-90 334.7 266 62.0
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 3.7e-89 332.4 250 66.8
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 3.5e-87 325.9 291 57.4
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 3.1e-83 312.8 221 70.1
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 2.5e-77 293.1 276 53.3
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 9.5e-77 291.2 279 52.3
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 3.1e-75 286.2 316 48.7
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 2.7e-71 273.1 282 48.2
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 1.4e-67 260.8 198 63.1
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.8e-52 209.9 191 55.5
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 6.2e-52 208.8 195 60.0
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 6.0e-47 192.2 170 56.5
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 2.5e-45 186.8 135 67.4
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 2.0e-42 177.2 279 40.5
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 2.3e-38 163.7 109 67.9
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 8.1e-36 155.2 114 66.7
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 2.9e-25 120.2 113 51.3
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 1.3e-12 78.2 275 29.1
CDE03G0511 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 4.8e-12 76.3 138 39.1


User provided reference genes

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