Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 5.8e-236 820.5 400 100.0
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 5.8e-236 820.5 400 100.0
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 2.0e-172 609.4 417 73.4
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 7.2e-170 600.9 438 71.2
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 4.6e-169 598.2 429 71.8
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.8e-168 596.3 429 70.9
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 5.7e-167 591.3 431 70.5
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 7.7e-164 580.9 438 68.7
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 1.0e-160 570.5 436 68.3
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 3.9e-160 568.5 440 66.8
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.4e-157 559.3 429 68.8
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 2.4e-157 559.3 439 65.6
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 9.1e-157 557.4 437 65.4
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 7.7e-156 554.3 437 65.7
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 5.0e-155 551.6 438 65.5
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 4.2e-154 548.5 439 65.1
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 2.1e-153 546.2 432 64.8
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 3.6e-153 545.4 438 64.6
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 1.8e-152 543.1 435 65.3
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 2.3e-152 542.7 437 64.1
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 4.0e-152 542.0 436 64.9
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 5.2e-152 541.6 427 63.9
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 1.5e-151 540.0 430 63.7
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 1.5e-151 540.0 439 64.0
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 2.6e-151 539.3 438 63.2
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 2.6e-151 539.3 436 64.7
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 1.7e-150 536.6 436 64.4
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 2.2e-150 536.2 434 64.5
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 2.8e-150 535.8 436 64.2
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 3.7e-150 535.4 437 63.8
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 6.3e-150 534.6 436 63.3
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 1.4e-149 533.5 426 64.1
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 2.4e-149 532.7 432 64.1
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 1.6e-148 530.0 432 63.4
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 2.0e-148 529.6 402 67.9
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 2.6e-148 529.3 430 63.5
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 3.5e-148 528.9 434 62.2
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 1.0e-147 527.3 434 63.4
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 5.0e-147 525.0 434 63.6
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 8.5e-147 524.2 439 63.3
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 1.1e-146 523.9 432 63.4
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 3.2e-146 522.3 436 62.6
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 5.5e-146 521.5 436 61.5
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 5.5e-146 521.5 435 62.8
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 5.5e-146 521.5 439 62.9
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 1.2e-145 520.4 428 62.4
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 1.2e-145 520.4 435 63.9
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 1.6e-145 520.0 430 61.9
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 2.1e-145 519.6 434 64.1
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 2.1e-145 519.6 409 66.7
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 4.7e-145 518.5 434 61.3
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 4.7e-145 518.5 435 63.2
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 6.1e-145 518.1 435 62.1
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 1.0e-144 517.3 439 62.0
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 1.4e-144 516.9 441 62.1
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 1.8e-144 516.5 434 59.9
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 2.3e-144 516.2 438 62.1
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 3.0e-144 515.8 424 63.0
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 5.2e-144 515.0 434 63.6
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 6.8e-144 514.6 431 61.3
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 8.8e-144 514.2 435 62.5
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 2.0e-143 513.1 429 62.2
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 1.3e-142 510.4 435 60.2
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 2.8e-142 509.2 437 62.2
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 8.3e-142 507.7 432 62.0
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 8.3e-142 507.7 432 62.0
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 8.3e-142 507.7 437 60.4
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 3.1e-141 505.8 411 62.0
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 4.1e-141 505.4 431 61.7
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 4.5e-140 501.9 433 60.3
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 1.0e-139 500.7 439 60.8
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 1.0e-139 500.7 410 63.7
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 1.3e-139 500.4 430 61.4
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 1.3e-139 500.4 430 61.4
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 1.7e-139 500.0 427 62.1
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 6.5e-139 498.0 430 59.5
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 3.2e-138 495.7 423 61.5
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 5.5e-138 495.0 410 63.7
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 3.0e-136 489.2 382 66.2
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 5.2e-136 488.4 451 57.4
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 1.5e-135 486.9 416 60.8
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 8.3e-134 481.1 423 60.8
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 2.4e-133 479.6 419 58.7
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 2.4e-133 479.6 363 64.7
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 5.4e-133 478.4 423 60.3
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 1.2e-132 477.2 369 66.7
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 1.3e-131 473.8 425 58.6
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 3.8e-131 472.2 343 70.3
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 5.0e-131 471.9 421 57.7
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 7.3e-130 468.0 442 56.8
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 4.7e-129 465.3 372 65.1
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 2.3e-128 463.0 421 59.1
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 4.0e-128 462.2 428 57.7
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.5e-127 460.3 332 67.2
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 7.5e-127 458.0 436 56.4
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 9.8e-127 457.6 370 62.7
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 1.7e-126 456.8 429 57.3
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 8.3e-126 454.5 437 55.8
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 2.4e-125 453.0 422 56.6
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 4.1e-125 452.2 434 57.6
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 5.4e-125 451.8 423 57.9
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 7.0e-125 451.4 429 57.3
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 7.0e-125 451.4 366 63.7
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 7.0e-125 451.4 424 57.5
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 9.2e-125 451.1 366 63.9
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 9.2e-125 451.1 366 63.9
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 9.2e-125 451.1 422 58.1
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 1.6e-124 450.3 422 57.8
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 1.3e-123 447.2 420 57.6
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 8.6e-123 444.5 408 58.3
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 1.1e-122 444.1 426 57.0
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 3.3e-122 442.6 353 64.3
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 5.6e-122 441.8 350 64.6
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 2.8e-121 439.5 350 63.1
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 1.4e-120 437.2 381 59.3
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 1.4e-120 437.2 431 57.3
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 7.5e-119 431.4 423 55.3
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 1.4e-117 427.2 423 54.8
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 4.1e-117 425.6 429 54.8
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 3.5e-116 422.5 429 54.5
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 4.6e-116 422.2 354 62.1
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 6.0e-116 421.8 429 56.2
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 1.1e-114 417.5 410 53.9
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 9.2e-109 397.9 313 63.6
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 7.8e-108 394.8 318 63.2
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 1.4e-104 384.0 412 52.7
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 1.9e-98 363.6 326 58.9
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 4.4e-95 352.4 293 60.8
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 4.4e-95 352.4 293 60.8
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 1.9e-90 337.0 361 53.7
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 4.0e-88 329.3 354 49.7
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 3.1e-80 303.1 411 44.0
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 5.3e-72 275.8 229 62.9
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 1.5e-63 247.7 355 42.8
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 5.0e-62 242.7 183 66.1
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 2.2e-54 217.2 148 71.6
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.4e-53 214.5 238 51.7
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.6e-52 211.1 164 62.8
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 4.2e-45 186.4 258 43.8
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 3.6e-36 156.8 132 58.3
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 7.0e-32 142.5 107 64.5
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 1.7e-30 137.9 136 55.9
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 1.4e-24 118.2 109 60.6
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 1.6e-23 114.8 110 57.3
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 1.9e-21 107.8 99 56.6
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 1.4e-11 75.1 49 67.3
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 4.6e-07 60.1 54 51.9
Thhalv10007203m.g Eutrema salsugineum HOM05D000076 ORTHO05D001150 3.9e-06 57.0 203 25.6


User provided reference genes

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