Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003365 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 5.0e-60 234.2 114 100.0
CSS0023477 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.7e-52 209.1 102 99.0
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 4.4e-32 141.4 70 94.3
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.1e-30 136.7 71 90.1
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 6.0e-29 131.0 71 84.5
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 1.0e-28 130.2 69 88.4
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 2.3e-28 129.0 71 84.5
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 3.9e-28 128.3 69 85.5
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 3.9e-28 128.3 71 83.1
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 5.1e-28 127.9 71 83.1
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 8.6e-28 127.1 71 83.1
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 8.6e-28 127.1 71 81.7
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 1.1e-27 126.7 71 81.7
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 1.1e-27 126.7 70 82.9
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 1.5e-27 126.3 71 81.7
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 1.5e-27 126.3 71 81.7
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 1.5e-27 126.3 71 81.7
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 1.5e-27 126.3 71 81.7
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 1.5e-27 126.3 71 83.1
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 1.9e-27 125.9 71 80.3
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 2.5e-27 125.6 72 83.3
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 3.3e-27 125.2 71 80.3
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 3.3e-27 125.2 71 81.7
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 5.6e-27 124.4 71 80.3
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 5.6e-27 124.4 70 81.4
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 5.6e-27 124.4 71 78.9
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 5.6e-27 124.4 73 76.7
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 7.3e-27 124.0 71 80.3
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 7.3e-27 124.0 71 80.3
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 1.2e-26 123.2 73 76.7
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 1.2e-26 123.2 71 78.9
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.2e-26 123.2 71 80.3
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 1.2e-26 123.2 72 79.2
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 1.2e-26 123.2 71 77.5
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 1.2e-26 123.2 72 81.9
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 1.2e-26 123.2 71 78.9
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 1.2e-26 123.2 71 78.9
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 1.6e-26 122.9 71 78.9
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 1.6e-26 122.9 71 77.5
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 1.6e-26 122.9 71 78.9
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 1.6e-26 122.9 71 80.3
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 2.1e-26 122.5 71 78.9
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 2.1e-26 122.5 71 78.9
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 2.1e-26 122.5 72 81.9
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 2.1e-26 122.5 72 81.9
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 2.1e-26 122.5 72 80.6
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 2.1e-26 122.5 72 80.6
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 2.1e-26 122.5 72 80.6
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 2.8e-26 122.1 71 77.5
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 2.8e-26 122.1 71 77.5
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 2.8e-26 122.1 71 76.1
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 2.8e-26 122.1 71 77.5
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 2.8e-26 122.1 71 78.9
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 2.8e-26 122.1 71 77.5
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 2.8e-26 122.1 70 80.0
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 3.6e-26 121.7 69 81.2
COL.COLO4_06310 Corchorus olitorius HOM05D004030 ORTHO05D004952 3.6e-26 121.7 71 78.9
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 3.6e-26 121.7 71 78.9
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 3.6e-26 121.7 71 78.9
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 3.6e-26 121.7 71 78.9
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 3.6e-26 121.7 71 77.5
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 3.6e-26 121.7 72 81.9
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 3.6e-26 121.7 71 77.5
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 4.7e-26 121.3 74 78.4
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 6.2e-26 120.9 71 77.5
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 6.2e-26 120.9 71 77.5
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 6.2e-26 120.9 71 78.9
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 8.1e-26 120.6 68 80.9
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 8.1e-26 120.6 71 76.1
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 8.1e-26 120.6 71 77.5
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 8.1e-26 120.6 71 77.5
SalBow5G5223 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.1e-25 120.2 72 79.2
HPP92_010042 Vanilla planifolia HOM05D004030 ORTHO05D004952 1.1e-25 120.2 71 73.2
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 1.4e-25 119.8 72 75.0
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 1.8e-25 119.4 67 82.1
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 1.8e-25 119.4 72 73.6
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.8e-25 119.4 70 80.0
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 2.4e-25 119.0 71 77.5
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 2.4e-25 119.0 71 77.5
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 2.4e-25 119.0 71 77.5
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 3.1e-25 118.6 69 78.3
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 3.1e-25 118.6 71 74.6
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 3.1e-25 118.6 71 74.6
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 3.1e-25 118.6 71 71.8
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 4.0e-25 118.2 68 79.4
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 4.0e-25 118.2 71 80.3
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 4.0e-25 118.2 69 76.8
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 4.0e-25 118.2 71 76.1
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 5.2e-25 117.9 72 79.2
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 5.2e-25 117.9 70 74.3
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 6.9e-25 117.5 76 72.4
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 8.9e-25 117.1 70 75.7
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 1.2e-24 116.7 71 78.9
TWI63G1163 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 1.2e-24 116.7 70 74.3
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 1.5e-24 116.3 71 71.8
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.0e-24 115.9 71 73.2
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.0e-24 115.9 69 75.4
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 2.0e-24 115.9 74 71.6
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 2.0e-24 115.9 71 77.5
Ah.16g108320 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.6e-24 115.5 69 76.8
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 2.6e-24 115.5 70 71.4
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 2.6e-24 115.5 67 80.6
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 3.4e-24 115.2 70 74.3
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 3.4e-24 115.2 72 75.0
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 3.4e-24 115.2 71 73.2
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 4.4e-24 114.8 70 74.3
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 5.8e-24 114.4 78 69.2
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 9.9e-24 113.6 70 74.3
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 9.9e-24 113.6 70 74.3
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 2.2e-23 112.5 69 73.9
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 2.9e-23 112.1 76 69.7
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 2.9e-23 112.1 69 73.9
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 3.8e-23 111.7 77 67.5
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 4.9e-23 111.3 70 72.9
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 4.9e-23 111.3 70 72.9
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 4.9e-23 111.3 70 74.3
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 4.9e-23 111.3 70 72.9
SHI28530 Sapria himalayana HOM05D004030 ORTHO05D004952 8.4e-23 110.5 69 68.1
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 1.9e-22 109.4 68 75.0
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 2.4e-22 109.0 72 70.8
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 7.1e-22 107.5 70 71.4
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 7.1e-22 107.5 70 71.4
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 7.1e-22 107.5 70 70.0
Peaxi162Scf00912g00019 Petunia axillaris HOM05D004030 ORTHO05D004952 1.6e-21 106.3 72 73.6
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 1.6e-21 106.3 69 71.0
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 2.7e-21 105.5 71 67.6
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 8.7e-20 100.5 69 63.8
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 9.6e-19 97.1 71 62.0
Lsat_1_v5_gn_6_74880 Lactuca sativa HOM05D004030 ORTHO05D004952 1.6e-18 96.3 76 57.9
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 8.1e-18 94.0 71 59.2
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 8.1e-18 94.0 66 62.1
Aqoxy2G00428 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 2.4e-17 92.4 53 75.5
Nitab4.5_0004602g0020 Nicotiana tabacum HOM05D004030 ORTHO05D004952 9.0e-17 90.5 70 64.3
Pp3c22_6900 Physcomitrium patens HOM05D004030 ORTHO05D004952 3.4e-16 88.6 74 54.1
SMO266G0004 Selaginella moellendorffii HOM05D004030 ORTHO05D004952 4.5e-16 88.2 69 55.1
Nitab4.5_0000271g0330 Nicotiana tabacum HOM05D004030 ORTHO05D004952 5.8e-16 87.8 70 62.9
CAN.G566.51 Capsicum annuum HOM05D004030 ORTHO05D004952 2.2e-15 85.9 74 54.1
CBR_g31948 Chara braunii HOM05D004030 ORTHO05D004952 4.2e-14 81.6 99 43.4
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 1.1e-09 67.0 80 46.2
BcaB03g13895 Brassica carinata HOM05D004030 ORTHO05D004952 9.0e-09 63.9 44 63.6
MCO08G144 Micromonas commoda HOM05D004030 ORTHO05D004952 2.6e-08 62.4 75 40.0
Actinidia37045 Actinidia chinensis HOM05D004030 ORTHO05D004952 5.8e-08 61.2 37 75.7
Pp3c21_660 Physcomitrium patens HOM05D004030 ORTHO05D004952 4.9e-07 58.2 51 49.0


User provided reference genes

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