Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1792.7 862 100.0
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1786.5 862 99.8
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1499.6 866 82.6
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1494.9 871 81.9
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1380.5 871 75.9
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1360.9 874 75.6
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1358.6 871 75.2
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1357.8 872 76.1
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1349.7 868 75.1
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1344.7 867 74.0
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1335.5 862 73.8
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1332.8 867 73.5
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1328.5 871 73.9
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1326.6 860 73.6
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1324.7 868 73.4
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1323.9 864 73.0
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1322.4 862 73.5
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1322.0 866 72.6
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1320.1 863 72.8
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1314.7 855 72.6
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1314.3 868 71.8
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1308.9 862 73.0
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1307.4 862 72.9
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1305.8 862 72.9
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1298.5 862 71.2
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1291.2 856 71.8
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1290.8 867 72.0
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1289.6 870 71.4
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1285.4 862 70.3
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1284.2 873 70.8
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1283.9 866 70.8
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1283.5 860 71.3
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1281.9 862 71.8
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1280.8 864 71.4
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1280.8 859 71.6
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1280.4 870 70.2
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1277.7 864 71.3
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1273.5 866 70.6
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1272.3 874 69.6
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1270.4 862 70.1
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1269.2 858 71.0
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1268.4 865 71.2
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1267.7 858 70.7
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1266.5 860 70.2
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1266.5 859 70.5
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1266.1 879 68.8
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1266.1 865 70.2
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1265.8 861 70.7
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1265.4 862 70.4
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1263.8 870 69.0
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1263.8 864 70.5
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1262.7 872 69.5
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1261.9 868 70.3
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1260.0 864 70.5
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1260.0 862 70.2
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1259.2 860 70.9
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1258.4 875 68.9
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1258.0 868 69.1
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1258.0 858 70.3
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1256.9 861 69.3
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1256.5 860 70.3
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1254.6 860 70.0
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1254.6 861 70.7
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1252.7 873 69.0
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1251.5 865 69.5
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1250.7 882 68.9
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1250.0 858 69.2
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1249.6 864 68.3
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1249.6 865 69.4
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1249.2 864 68.3
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1248.8 864 68.6
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1247.6 864 68.2
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1247.3 868 68.3
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1246.5 863 70.6
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1245.7 861 70.2
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1245.0 859 69.0
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1245.0 868 68.1
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1243.4 862 68.4
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1241.9 868 68.0
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1241.9 874 68.9
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1240.7 859 69.2
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1239.9 887 67.8
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1235.3 859 68.6
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1228.4 860 68.7
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1228.0 867 68.7
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1223.4 853 68.9
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1216.1 861 68.1
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1214.9 827 70.0
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1137.5 867 63.4
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1123.2 848 64.7
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 0.0e+00 1117.1 744 72.8
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 0.0e+00 1097.4 857 61.7
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 1.5e-310 1069.3 691 72.6
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 1.3e-306 1056.2 647 77.1
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 3.9e-306 1054.7 856 61.2
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 1.5e-305 1052.7 859 62.6
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 1.1e-300 1036.6 692 71.2
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 1.3e-285 986.5 864 55.4
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 3.2e-284 981.9 860 54.3
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 1.3e-280 969.9 852 55.5
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 6.7e-274 947.6 867 52.5
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 9.3e-207 724.5 760 47.8
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 2.2e-184 650.2 388 80.7
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 5.7e-156 555.8 477 58.7
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 5.0e-144 516.2 460 55.4
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 1.1e-119 435.3 362 59.7
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 2.4e-101 374.4 307 62.2
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 1.3e-70 272.3 204 63.7
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 2.2e-67 261.5 168 72.6
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 1.7e-54 218.8 161 66.5
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 1.4e-50 205.7 169 59.8
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 3.8e-43 181.0 196 52.0
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 9.1e-37 159.8 216 43.1
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.0e-32 146.4 85 82.4
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 8.8e-32 143.3 118 60.2
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 4.4e-31 141.0 149 46.3
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 1.2e-25 122.9 86 73.3
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 2.2e-22 112.1 69 72.5
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 8.3e-22 110.2 90 60.0
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 7.0e-21 107.1 81 63.0
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 2.5e-18 98.6 112 50.0
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.2e-14 85.5 274 25.2
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 1.6e-12 79.3 381 24.1
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 3.5e-12 78.2 331 24.8
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 3.9e-11 74.7 329 24.3
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 5.0e-11 74.3 314 24.8
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 3.3e-10 71.6 97 46.4
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 2.1e-09 68.9 33 90.9
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 2.1e-09 68.9 311 26.7
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 2.8e-09 68.6 64 51.6
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 1.8e-08 65.9 299 26.8
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 4.0e-08 64.7 250 23.2
Cre02.g146650 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.2e-07 63.2 302 26.8
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 2.0e-07 62.4 190 27.9
AagrBONN_evm.TU.Sc2ySwM_369.291 Anthoceros agrestis HOM05D008676 ORTHO05D010936 5.8e-07 60.8 173 26.0
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 5.8e-07 60.8 274 22.3
ATR0511G001 Amborella trichopoda HOM05D006378 ORTHO05D007959 2.9e-06 58.5 83 38.6
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 2.9e-06 58.5 301 24.9
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 2.9e-06 58.5 298 24.2


User provided reference genes

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