Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003287 Camellia sinensis var. sinensis HOM05D006357 ORTHO05D007925 7.0e-96 354.0 184 100.0
Dinv22833 Davidia involucrata HOM05D006357 ORTHO05D007925 2.0e-74 282.7 184 75.5
Hma1.2p1_0587F.1_g184180 Hydrangea macrophylla HOM05D006357 ORTHO05D007925 4.4e-74 281.6 182 76.4
Rhsim01G0204700 Rhododendron simsii HOM05D006357 ORTHO05D007925 1.7e-73 279.6 179 77.7
Actinidia37077 Actinidia chinensis HOM05D006357 ORTHO05D007925 2.2e-73 279.3 182 75.8
CiPaw.13G134700 Carya illinoinensis HOM05D006357 ORTHO05D007925 8.3e-73 277.3 184 74.5
PGR119G0351 Punica granatum HOM05D006357 ORTHO05D007925 1.9e-72 276.2 185 75.7
Prupe.6G132700 Prunus persica HOM05D006357 ORTHO05D007925 3.2e-72 275.4 184 71.7
Phvul.011G095000 Phaseolus vulgaris HOM05D006357 ORTHO05D007925 9.2e-72 273.9 181 73.5
Cfa010003 Carpinus fangiana HOM05D006357 ORTHO05D007925 1.6e-71 273.1 184 73.4
MBI01_g14623_MAGBIO Magnolia biondii HOM05D006357 ORTHO05D007925 1.6e-71 273.1 176 75.6
VMungo1127G1055 Vigna mungo HOM05D006357 ORTHO05D007925 2.1e-71 272.7 181 72.4
Thecc.09G281200 Theobroma cacao HOM05D006357 ORTHO05D007925 2.7e-71 272.3 184 72.3
Ciclev10029363m.g Citrus clementina HOM05D006357 ORTHO05D007925 3.5e-71 271.9 184 72.3
GSVIVG01036107001 Vitis vinifera HOM05D006357 ORTHO05D007925 3.5e-71 271.9 185 74.1
Atru.chr3.3206 Acer truncatum HOM05D006357 ORTHO05D007925 7.8e-71 270.8 184 74.5
MD03G1147800 Malus domestica HOM05D006357 ORTHO05D007925 7.8e-71 270.8 184 71.7
Nitab4.5_0006120g0030 Nicotiana tabacum HOM05D006357 ORTHO05D007925 1.0e-70 270.4 176 73.3
FvH4_3g25140 Fragaria vesca HOM05D006357 ORTHO05D007925 1.3e-70 270.0 178 74.2
arahy.Tifrunner.gnm1.ann1.5186VC Arachis hypogaea HOM05D006357 ORTHO05D007925 1.7e-70 269.6 185 73.0
Lj2P966T16 Lonicera japonica HOM05D006357 ORTHO05D007925 1.7e-70 269.6 184 71.2
TAR633G1946 Trochodendron aralioides HOM05D006357 ORTHO05D007925 1.7e-70 269.6 180 73.9
Atru.chr3.3208 Acer truncatum HOM05D006357 ORTHO05D007925 3.0e-70 268.9 184 73.4
Solyc11g068550.1 Solanum lycopersicum HOM05D006357 ORTHO05D007925 3.0e-70 268.9 178 73.0
Sopen11g027270 Solanum pennellii HOM05D006357 ORTHO05D007925 3.0e-70 268.9 178 73.0
Nitab4.5_0005641g0010 Nicotiana tabacum HOM05D006357 ORTHO05D007925 3.9e-70 268.5 176 73.3
Prupe.6G132600 Prunus persica HOM05D006357 ORTHO05D007925 3.9e-70 268.5 180 73.3
QL01p012073 Quercus lobata HOM05D006357 ORTHO05D007925 3.9e-70 268.5 180 75.0
Glyma.11G182400 Glycine max HOM05D006357 ORTHO05D007925 5.1e-70 268.1 177 72.9
Lalb_Chr01g0004891 Lupinus albus HOM05D006357 ORTHO05D007925 5.1e-70 268.1 181 70.7
arahy.Tifrunner.gnm1.ann1.JXBE2X Arachis hypogaea HOM05D006357 ORTHO05D007925 6.6e-70 267.7 185 72.4
ClCG02G022220 Citrullus lanatus HOM05D006357 ORTHO05D007925 6.6e-70 267.7 184 71.7
FAN21G3578 Fragaria x ananassa HOM05D006357 ORTHO05D007925 6.6e-70 267.7 178 73.6
Cc01_g08980 Coffea canephora HOM05D006357 ORTHO05D007925 1.9e-69 266.2 178 71.9
Lsat_1_v5_gn_1_59200 Lactuca sativa HOM05D006357 ORTHO05D007925 1.9e-69 266.2 180 70.0
MELO3C014499.2 Cucumis melo HOM05D006357 ORTHO05D007925 3.3e-69 265.4 182 71.4
QL01p012091 Quercus lobata HOM05D006357 ORTHO05D007925 3.3e-69 265.4 180 73.9
Aqoxy2G01095 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 4.3e-69 265.0 183 71.0
CANSAT54G2809 Cannabis sativa HOM05D006357 ORTHO05D007925 1.6e-68 263.1 181 70.2
CsaV3_6G038350 Cucumis sativus L. HOM05D006357 ORTHO05D007925 2.1e-68 262.7 182 70.3
Manes.11G162800 Manihot esculenta HOM05D006357 ORTHO05D007925 2.8e-68 262.3 184 69.6
Duzib150G0376 Durio zibethinus HOM05D006357 ORTHO05D007925 3.6e-68 261.9 184 70.1
Eucgr.J00502 Eucalyptus grandis HOM05D006357 ORTHO05D007925 3.6e-68 261.9 184 70.1
unitig_699.g19178 Utricularia gibba HOM05D006357 ORTHO05D007925 6.2e-68 261.2 182 70.9
Gohir.A08G005700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 1.1e-67 260.4 184 69.6
SalBow3G2384 Salvia bowleyana HOM05D006357 ORTHO05D007925 1.8e-67 259.6 176 71.0
A06p22010 Brassica napus HOM05D006357 ORTHO05D007925 2.4e-67 259.2 184 69.0
BraA06t25289Z Brassica rapa HOM05D006357 ORTHO05D007925 2.4e-67 259.2 184 69.0
MD11G1166600 Malus domestica HOM05D006357 ORTHO05D007925 2.4e-67 259.2 180 70.6
Gohir.D08G016000 Gossypium hirsutum HOM05D006357 ORTHO05D007925 3.1e-67 258.8 183 68.9
Gorai.004G010300 Gossypium raimondii HOM05D006357 ORTHO05D007925 3.1e-67 258.8 183 68.9
RcHm_v2.0_Chr5g0046241 Rosa chinensis HOM05D006357 ORTHO05D007925 3.1e-67 258.8 181 70.2
THA.LOC104814785 Tarenaya hassleriana HOM05D006357 ORTHO05D007925 5.2e-67 258.1 183 69.9
MSTRG.12374 Avicennia marina HOM05D006357 ORTHO05D007925 8.9e-67 257.3 181 68.5
Lj3g0017887 Lotus japonicus HOM05D006357 ORTHO05D007925 8.9e-67 257.3 183 66.7
Gorai.001G122700 Gossypium raimondii HOM05D006357 ORTHO05D007925 1.2e-66 256.9 180 68.9
Ah.08g215640 Amaranthus hybridus HOM05D006357 ORTHO05D007925 1.5e-66 256.5 179 70.9
Gohir.D07G114400 Gossypium hirsutum HOM05D006357 ORTHO05D007925 1.5e-66 256.5 180 68.9
Sp5g16810 Schrenkiella parvula HOM05D006357 ORTHO05D007925 2.0e-66 256.1 184 68.5
Sc06g0008780 Simmondsia chinensis HOM05D006357 ORTHO05D007925 2.0e-66 256.1 182 65.4
Thhalv10010749m.g Eutrema salsugineum HOM05D006357 ORTHO05D007925 2.6e-66 255.8 184 69.6
Gohir.A07G110700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 3.4e-66 255.4 181 68.0
EL10Ac7g15835 Beta vulgaris HOM05D006357 ORTHO05D007925 9.9e-66 253.8 179 68.7
BcaB01g01165 Brassica carinata HOM05D006357 ORTHO05D007925 9.9e-66 253.8 183 68.3
BcaC01g02047 Brassica carinata HOM05D006357 ORTHO05D007925 1.3e-65 253.4 184 67.9
C03p69190 Brassica napus HOM05D006357 ORTHO05D007925 1.3e-65 253.4 184 67.9
BolC3t19173H Brassica oleracea HOM05D006357 ORTHO05D007925 1.3e-65 253.4 184 67.9
CARHR104480 Cardamine hirsuta HOM05D006357 ORTHO05D007925 1.3e-65 253.4 181 69.1
Migut.N02483 Erythranthe guttata HOM05D006357 ORTHO05D007925 2.9e-65 252.3 173 71.1
AT3G44380 Arabidopsis thaliana HOM05D006357 ORTHO05D007925 4.9e-65 251.5 181 69.1
PSO339G3266 Papaver somniferum HOM05D006357 ORTHO05D007925 4.9e-65 251.5 177 69.5
PSO801G0234 Papaver somniferum HOM05D006357 ORTHO05D007925 6.4e-65 251.1 177 68.9
HanXRQChr01g0024501 Helianthus annuus HOM05D006357 ORTHO05D007925 1.1e-64 250.4 180 67.2
Carub.0005s1011 Capsella rubella HOM05D006357 ORTHO05D007925 1.4e-64 250.0 181 68.0
Potri.001G218400 Populus trichocarpa HOM05D006357 ORTHO05D007925 2.4e-64 249.2 185 66.5
Sabra16G0125700 Salix brachista HOM05D006357 ORTHO05D007925 4.2e-64 248.4 185 67.0
Ca_19414_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 1.2e-63 246.9 180 65.0
FvH4_3g25160 Fragaria vesca HOM05D006357 ORTHO05D007925 1.2e-63 246.9 178 68.5
FAN25G2095 Fragaria x ananassa HOM05D006357 ORTHO05D007925 1.6e-63 246.5 178 68.5
Haze_23361 Corylus avellana HOM05D006357 ORTHO05D007925 2.7e-63 245.7 164 75.0
Medtr4g052840 Medicago truncatula HOM05D006357 ORTHO05D007925 2.7e-63 245.7 175 67.4
AL5G22540 Arabidopsis lyrata HOM05D006357 ORTHO05D007925 3.5e-63 245.4 181 67.4
TWI75G1708 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 3.5e-63 245.4 182 65.9
Psat7g187640 Pisum sativum HOM05D006357 ORTHO05D007925 1.3e-62 243.4 179 65.4
SGA_v2.0_scaffold177G39425 Striga asiatica HOM05D006357 ORTHO05D007925 1.7e-62 243.0 175 68.0
Aqoxy4G02740 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 3.9e-62 241.9 182 67.0
TWI79G0514 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 3.9e-62 241.9 182 64.8
TPR.G17225 Trifolium pratense HOM05D006357 ORTHO05D007925 6.6e-62 241.1 179 65.4
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 8.7e-62 240.7 179 67.6
Ca_26666_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 1.1e-61 240.4 178 64.6
Nn6g34850 Nelumbo nucifera HOM05D006357 ORTHO05D007925 1.9e-61 239.6 176 67.0
FAN11G2870 Fragaria x ananassa HOM05D006357 ORTHO05D007925 4.3e-61 238.4 171 68.4
Dinv42541 Davidia involucrata HOM05D006357 ORTHO05D007925 5.6e-61 238.0 168 71.4
Sed0020794 Sechium edule HOM05D006357 ORTHO05D007925 1.6e-60 236.5 183 65.6
PGR102G0344 Punica granatum HOM05D006357 ORTHO05D007925 6.9e-59 231.1 180 63.3
Lalb_Chr03g0028161 Lupinus albus HOM05D006357 ORTHO05D007925 9.9e-58 227.3 180 63.3
Sc21g0007020 Simmondsia chinensis HOM05D006357 ORTHO05D007925 2.7e-55 219.2 189 57.7
Nn6g34849 Nelumbo nucifera HOM05D006357 ORTHO05D007925 6.0e-55 218.0 184 57.6
DCAR_006168 Daucus carota HOM05D006357 ORTHO05D007925 3.3e-53 212.2 176 59.7
Os08g0558300 Oryza sativa ssp. japonica HOM05D006357 ORTHO05D007925 1.4e-51 206.8 175 61.1
AUR62009745 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.8e-51 206.5 202 53.0
Ah.15g095880 Amaranthus hybridus HOM05D006357 ORTHO05D007925 2.6e-50 202.6 194 53.6
AUR62036192 Chenopodium quinoa HOM05D006357 ORTHO05D007925 3.4e-50 202.2 201 51.7
PSO339G1489 Papaver somniferum HOM05D006357 ORTHO05D007925 3.4e-50 202.2 158 66.5
PSO384G0917 Papaver somniferum HOM05D006357 ORTHO05D007925 4.5e-50 201.8 158 66.5
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 7.6e-50 201.1 137 73.0
AUR62036201 Chenopodium quinoa HOM05D006357 ORTHO05D007925 2.5e-45 186.0 141 67.4
PGSC0003DMG400026335 Solanum tuberosum HOM05D006357 ORTHO05D007925 2.0e-42 176.4 106 76.4
AagrBONN_evm.TU.Sc2ySwM_117.3687 Anthoceros agrestis HOM05D006357 ORTHO05D007925 3.7e-36 155.6 169 46.2
RcHm_v2.0_Chr5g0046191 Rosa chinensis HOM05D006357 ORTHO05D007925 8.2e-36 154.5 115 68.7
Mapoly0079s0020 Marchantia polymorpha HOM05D006357 ORTHO05D007925 1.1e-35 154.1 178 45.5
SMO347G0335 Selaginella moellendorffii HOM05D006357 ORTHO05D007925 2.0e-34 149.8 173 46.2
ATR0820G064 Amborella trichopoda HOM05D006357 ORTHO05D007925 3.4e-34 149.1 180 46.1
Cpa.g.sc195.8 Carica papaya HOM05D006357 ORTHO05D007925 1.4e-32 143.7 107 69.2
Actinidia35469 Actinidia chinensis HOM05D006357 ORTHO05D007925 7.2e-32 141.4 90 73.3
SEGI_40876 Sequoiadendron giganteum HOM05D006357 ORTHO05D007925 3.5e-31 139.0 175 43.4
Pp3c21_10640 Physcomitrium patens HOM05D006357 ORTHO05D007925 5.1e-30 135.2 181 42.0
Pp3c2_16750 Physcomitrium patens HOM05D006357 ORTHO05D007925 4.3e-29 132.1 187 40.1
AUR62036200 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.4e-27 127.1 95 64.2
Pp3c9_9450 Physcomitrium patens HOM05D006357 ORTHO05D007925 4.1e-27 125.6 170 40.0
ATR0820G202 Amborella trichopoda HOM05D006357 ORTHO05D007925 3.4e-26 122.5 130 50.8
AUR62044742 Chenopodium quinoa HOM05D006357 ORTHO05D007925 7.4e-21 104.8 75 68.0
ATR0820G128 Amborella trichopoda HOM05D006357 ORTHO05D007925 2.6e-18 96.3 93 53.8
Glyma.12G090400 Glycine max HOM05D006357 ORTHO05D007925 1.6e-10 70.5 71 43.7
CBR_g44534 Chara braunii HOM05D006357 ORTHO05D007925 1.0e-09 67.8 182 28.0
PSO782G1457 Papaver somniferum HOM05D003111 ORTHO05D003502 1.6e-07 60.5 146 28.1
HanXRQChr14g0456011 Helianthus annuus HOM05D003111 ORTHO05D003502 2.1e-07 60.1 144 29.2
PSO063G2693 Papaver somniferum HOM05D003111 ORTHO05D003502 2.1e-07 60.1 115 33.9
Ciclev10009328m.g Citrus clementina HOM05D003111 ORTHO05D003502 1.4e-06 57.4 164 26.8
Os12g0119800 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D000273 1.4e-06 57.4 154 32.5
DCAR_016220 Daucus carota HOM05D003111 ORTHO05D003502 2.3e-06 56.6 165 27.3
TWI34G0805 Tripterygium wilfordii HOM05D003111 ORTHO05D003502 3.0e-06 56.2 147 23.8
HPP92_019617 Vanilla planifolia HOM05D003111 ORTHO05D003502 4.0e-06 55.8 164 27.4
HPP92_019623 Vanilla planifolia HOM05D003111 ORTHO05D003502 4.0e-06 55.8 164 27.4


User provided reference genes

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