Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003257 Camellia sinensis var. sinensis HOM05D000291 ORTHO05D000879 1.6e-35 152.5 92 100.0
CSS0005835 Camellia sinensis var. sinensis HOM05D021829 ORTHO05D000879 7.0e-28 127.1 95 72.6
CSS0028682 Camellia sinensis var. sinensis HOM05D021829 ORTHO05D109265 2.0e-22 109.0 86 69.8
CSS0036968 Camellia sinensis var. sinensis HOM05D021829 ORTHO05D000879 1.2e-19 99.8 107 55.1
CSS0022375 Camellia sinensis var. sinensis HOM05D021829 ORTHO05D109211 1.1e-17 93.2 106 53.8
CSS0025856 Camellia sinensis var. sinensis HOM05D021829 ORTHO05D110646 2.5e-17 92.0 105 54.3
CSS0039170 Camellia sinensis var. sinensis HOM05D000291 ORTHO05D000879 8.8e-15 83.6 90 67.8
CSS0044659 Camellia sinensis var. sinensis HOM05D021829 ORTHO05D000879 2.0e-14 82.4 88 60.2
Cfa013450 Carpinus fangiana HOM05D000291 ORTHO05D000879 3.1e-12 75.1 80 52.5
Phvul.003G141500 Phaseolus vulgaris HOM05D000291 ORTHO05D000879 9.2e-12 73.6 45 82.2
Ca_02104_v3 Cicer arietinum L. HOM05D000291 ORTHO05D000879 1.2e-11 73.2 45 82.2
GSVIVG01010864001 Vitis vinifera HOM05D000291 ORTHO05D000879 2.0e-11 72.4 43 81.4
Medtr2g037980 Medicago truncatula HOM05D000291 ORTHO05D000879 2.7e-11 72.0 41 87.8
Glyma.13G100400 Glycine max HOM05D000291 ORTHO05D000879 3.5e-11 71.6 74 55.4
Actinidia01277 Actinidia chinensis HOM05D000291 ORTHO05D000879 5.9e-11 70.9 98 48.0
CSS0022651 Camellia sinensis var. sinensis HOM05D000291 ORTHO05D000879 5.9e-11 70.9 43 76.7
Potri.018G142800 Populus trichocarpa HOM05D000291 ORTHO05D000879 5.9e-11 70.9 39 92.3
Sabra18G0116600 Salix brachista HOM05D000291 ORTHO05D000879 5.9e-11 70.9 74 59.5
VMungo1215G0077 Vigna mungo HOM05D000291 ORTHO05D000879 7.8e-11 70.5 45 80.0
CiPaw.07G196800 Carya illinoinensis HOM05D000291 ORTHO05D000879 1.0e-10 70.1 91 51.6
Cc00_g20360 Coffea canephora HOM05D000291 ORTHO05D000879 1.7e-10 69.3 98 45.9
Dinv25439 Davidia involucrata HOM05D000291 ORTHO05D000879 2.3e-10 68.9 100 45.0
vmacro20816 Vaccinium macrocarpon HOM05D000291 ORTHO05D000879 2.3e-10 68.9 85 49.4
Hma1.2p1_1326F.1_g275810 Hydrangea macrophylla HOM05D000291 ORTHO05D000879 3.8e-10 68.2 85 50.6
Dinv41173 Davidia involucrata HOM05D000291 ORTHO05D000879 8.6e-10 67.0 89 48.3
CAN.G67.5 Capsicum annuum HOM05D000291 ORTHO05D000879 1.1e-09 66.6 98 40.8
Ca_21253_v3 Cicer arietinum L. HOM05D000291 ORTHO05D000879 1.1e-09 66.6 42 83.3
Haze_22017 Corylus avellana HOM05D000291 ORTHO05D000879 1.1e-09 66.6 77 50.6
Solyc12g017430.3 Solanum lycopersicum HOM05D000291 ORTHO05D000879 1.1e-09 66.6 41 78.0
Psat1g145640 Pisum sativum HOM05D000291 ORTHO05D000879 1.5e-09 66.2 41 80.5
Sabra06G0056500 Salix brachista HOM05D000291 ORTHO05D000879 1.5e-09 66.2 85 52.9
Thecc.09G185800 Theobroma cacao HOM05D000291 ORTHO05D000879 1.5e-09 66.2 73 57.5
Glyma.17G059500 Glycine max HOM05D000291 ORTHO05D000879 1.9e-09 65.9 45 80.0
Nitab4.5_0000007g0370 Nicotiana tabacum HOM05D000291 ORTHO05D000879 1.9e-09 65.9 99 43.4
Potri.006G075800 Populus trichocarpa HOM05D000291 ORTHO05D000879 1.9e-09 65.9 39 84.6
Lj4g0023693 Lotus japonicus HOM05D000291 ORTHO05D000879 2.5e-09 65.5 45 77.8
TPR.G5434 Trifolium pratense HOM05D000291 ORTHO05D000879 2.5e-09 65.5 45 75.6
Glyma.15G165800 Glycine max HOM05D000291 ORTHO05D000879 4.3e-09 64.7 40 85.0
MD16G1249100 Malus domestica HOM05D000291 ORTHO05D000879 4.3e-09 64.7 44 79.5
PGSC0003DMG400009667 Solanum tuberosum HOM05D000291 ORTHO05D000879 5.6e-09 64.3 95 42.1
Cpa.g.sc95.13 Carica papaya HOM05D000291 ORTHO05D000879 9.5e-09 63.5 74 58.1
Gorai.009G002600 Gossypium raimondii HOM05D000291 ORTHO05D000879 9.5e-09 63.5 45 73.3
Nitab4.5_0000018g0040 Nicotiana tabacum HOM05D000291 ORTHO05D000879 9.5e-09 63.5 43 69.8
Eucgr.C02326 Eucalyptus grandis HOM05D000291 ORTHO05D000879 1.2e-08 63.2 38 81.6
Lalb_Chr11g0074781 Lupinus albus HOM05D000291 ORTHO05D000879 1.2e-08 63.2 41 80.5
Psat4g013400 Pisum sativum HOM05D000291 ORTHO05D000879 1.2e-08 63.2 41 75.6
Gohir.A05G002400 Gossypium hirsutum HOM05D000291 ORTHO05D000879 1.6e-08 62.8 80 47.5
Lalb_Chr13g0300021 Lupinus albus HOM05D000291 ORTHO05D000879 1.6e-08 62.8 45 73.3
Oeu055539.1 Olea europaea HOM05D000291 ORTHO05D000879 1.6e-08 62.8 43 74.4
Nitab4.5_0001995g0060 Nicotiana tabacum HOM05D000291 ORTHO05D000879 2.1e-08 62.4 100 39.0
THA.LOC104811775 Tarenaya hassleriana HOM05D000291 ORTHO05D000879 2.1e-08 62.4 45 75.6
CsaV3_2G008710 Cucumis sativus L. HOM05D000291 ORTHO05D000879 2.8e-08 62.0 74 51.4
Duzib168G0006 Durio zibethinus HOM05D000291 ORTHO05D000879 2.8e-08 62.0 96 45.8
Duzib150G0075 Durio zibethinus HOM05D000291 ORTHO05D000879 3.6e-08 61.6 92 47.8
Lj6g0024154 Lotus japonicus HOM05D000291 ORTHO05D000879 3.6e-08 61.6 40 80.0
Hma1.2p1_0022F.1_g014490 Hydrangea macrophylla HOM05D000291 ORTHO05D000879 4.7e-08 61.2 37 78.4
Medtr4g127440 Medicago truncatula HOM05D000291 ORTHO05D000879 4.7e-08 61.2 45 68.9
MBI13_g34039_MAGBIO Magnolia biondii HOM05D000291 ORTHO05D000879 6.1e-08 60.8 41 75.6
TWI34G0787 Tripterygium wilfordii HOM05D000291 ORTHO05D000879 6.1e-08 60.8 71 53.5
TAR383G0754 Trochodendron aralioides HOM05D000291 ORTHO05D000879 6.1e-08 60.8 97 41.2
Atru.chr7.758 Acer truncatum HOM05D000291 ORTHO05D000879 8.0e-08 60.5 73 49.3
Atru.chr7.780 Acer truncatum HOM05D000291 ORTHO05D000879 8.0e-08 60.5 73 49.3
ClCG11G011780 Citrullus lanatus HOM05D000291 ORTHO05D000879 8.0e-08 60.5 74 52.7
Gohir.D05G003000 Gossypium hirsutum HOM05D000291 ORTHO05D000879 8.0e-08 60.5 45 71.1
QL02p046816 Quercus lobata HOM05D000291 ORTHO05D000879 8.0e-08 60.5 42 71.4
Sc14g0001450 Simmondsia chinensis HOM05D000291 ORTHO05D000879 8.0e-08 60.5 43 72.1
TPR.G9000 Trifolium pratense HOM05D000291 ORTHO05D000879 8.0e-08 60.5 42 73.8
Aa31LG3G13100 Aethionema arabicum HOM05D000291 ORTHO05D000879 1.0e-07 60.1 45 73.3
Nitab4.5_0001835g0010 Nicotiana tabacum HOM05D000291 ORTHO05D000879 1.0e-07 60.1 43 67.4
Peaxi162Scf00124g00044 Petunia axillaris HOM05D000291 ORTHO05D000879 1.4e-07 59.7 43 67.4
Ah.09g230230 Amaranthus hybridus HOM05D000291 ORTHO05D000879 1.8e-07 59.3 40 77.5
MSTRG.19374 Avicennia marina HOM05D000291 ORTHO05D000879 1.8e-07 59.3 75 50.7
MELO3C003976.2 Cucumis melo HOM05D000291 ORTHO05D000879 2.3e-07 58.9 98 44.9
Prupe.1G075800 Prunus persica HOM05D000291 ORTHO05D000879 2.3e-07 58.9 40 80.0
PGR044G0232 Punica granatum HOM05D000291 ORTHO05D000879 2.3e-07 58.9 41 78.0
THA.LOC104817777 Tarenaya hassleriana HOM05D000291 ORTHO05D000879 2.3e-07 58.9 42 76.2
COL.COLO4_07058 Corchorus olitorius HOM05D000291 ORTHO05D000879 3.0e-07 58.5 42 76.2
MD13G1242200 Malus domestica HOM05D000291 ORTHO05D000879 3.0e-07 58.5 42 73.8
TWI63G0722 Tripterygium wilfordii HOM05D000291 ORTHO05D000879 3.0e-07 58.5 41 73.2
VMungo1309G2753 Vigna mungo HOM05D000291 ORTHO05D000879 3.0e-07 58.5 42 76.2
CARHR270990 Cardamine hirsuta HOM05D000291 ORTHO05D000879 4.0e-07 58.2 42 73.8
Thhalv10013043m.g Eutrema salsugineum HOM05D000291 ORTHO05D000879 5.2e-07 57.8 42 73.8
BcaB05g22327 Brassica carinata HOM05D000291 ORTHO05D000879 6.8e-07 57.4 40 72.5
BcaB08g36078 Brassica carinata HOM05D000291 ORTHO05D000879 6.8e-07 57.4 42 73.8
CAN.G306.5 Capsicum annuum HOM05D000291 ORTHO05D000879 6.8e-07 57.4 90 53.3
Migut.L01883 Erythranthe guttata HOM05D000291 ORTHO05D000879 6.8e-07 57.4 41 65.9
A10p14590 Brassica napus HOM05D000291 ORTHO05D000879 8.9e-07 57.0 42 73.8
BraA10t43546Z Brassica rapa HOM05D000291 ORTHO05D000879 8.9e-07 57.0 42 73.8
Glyma.09G059500 Glycine max HOM05D000291 ORTHO05D000879 8.9e-07 57.0 42 73.8
Peaxi162Scf00006g02414 Petunia axillaris HOM05D000291 ORTHO05D000879 8.9e-07 57.0 101 36.6
BcaC04g19990 Brassica carinata HOM05D000291 ORTHO05D000879 1.2e-06 56.6 35 80.0
C09p49030 Brassica napus HOM05D000291 ORTHO05D000879 1.2e-06 56.6 35 80.0
BolC9t57754H Brassica oleracea HOM05D000291 ORTHO05D000879 1.2e-06 56.6 35 80.0
Carub.0008s1771 Capsella rubella HOM05D000291 ORTHO05D000879 1.2e-06 56.6 42 71.4
FAN07G2671 Fragaria x ananassa HOM05D000291 ORTHO05D000879 1.2e-06 56.6 41 75.6
FAN17G1456 Fragaria x ananassa HOM05D000291 ORTHO05D000879 1.2e-06 56.6 41 75.6
FAN22G1254 Fragaria x ananassa HOM05D000291 ORTHO05D000879 1.2e-06 56.6 41 75.6
PSO063G1003 Papaver somniferum HOM05D000291 ORTHO05D000879 1.2e-06 56.6 31 90.3
PSO170G1249 Papaver somniferum HOM05D000291 ORTHO05D000879 1.2e-06 56.6 31 90.3
Rhsim01G0117200 Rhododendron simsii HOM05D000291 ORTHO05D000879 1.2e-06 56.6 89 55.1
AL7G27060 Arabidopsis lyrata HOM05D000291 ORTHO05D000879 1.5e-06 56.2 33 81.8
AT4G25940 Arabidopsis thaliana HOM05D000291 ORTHO05D000879 1.5e-06 56.2 33 81.8
A02p08660 Brassica napus HOM05D000291 ORTHO05D000879 1.5e-06 56.2 45 68.9
BraA02t05936Z Brassica rapa HOM05D000291 ORTHO05D000879 1.5e-06 56.2 45 68.9
Ciclev10010653m.g Citrus clementina HOM05D000291 ORTHO05D000879 1.5e-06 56.2 44 70.5
Nn8g40788 Nelumbo nucifera HOM05D000291 ORTHO05D000879 1.5e-06 56.2 65 61.5
Hund09060 Selenicereus undatus HOM05D000291 ORTHO05D000879 1.5e-06 56.2 40 75.0
Aqoxy7G02793 Aquilegia oxysepala HOM05D000291 ORTHO05D000879 2.0e-06 55.8 34 82.4
Manes.14G158100 Manihot esculenta HOM05D000291 ORTHO05D000879 2.0e-06 55.8 43 72.1
Phvul.009G236300 Phaseolus vulgaris HOM05D000291 ORTHO05D000879 2.0e-06 55.8 37 73.0
Sp6g18930 Schrenkiella parvula HOM05D000291 ORTHO05D000879 2.0e-06 55.8 42 71.4
Sed0015547 Sechium edule HOM05D000291 ORTHO05D000879 2.6e-06 55.5 98 43.9
CDE07G0665 Ceratophyllum demersum HOM05D000751 ORTHO05D000889 3.4e-06 55.1 81 42.0
PGSC0003DMG400014096 Solanum tuberosum HOM05D000291 ORTHO05D000879 3.4e-06 55.1 43 65.1
AL8G33170 Arabidopsis lyrata HOM05D000291 ORTHO05D000879 4.4e-06 54.7 42 69.0
CARHR233450 Cardamine hirsuta HOM05D000291 ORTHO05D000879 4.4e-06 54.7 33 78.8
FvH4_4g07320 Fragaria vesca HOM05D000291 ORTHO05D000879 4.4e-06 54.7 41 73.2
Os06g0699800 Oryza sativa ssp. japonica HOM05D000291 ORTHO05D000879 4.4e-06 54.7 32 81.2
HPP92_020433 Vanilla planifolia HOM05D000291 ORTHO05D000879 4.4e-06 54.7 86 43.0
Aa31LG3G310 Aethionema arabicum HOM05D000291 ORTHO05D000879 5.7e-06 54.3 75 46.7
BcaC03g14175 Brassica carinata HOM05D000291 ORTHO05D000879 5.7e-06 54.3 42 71.4
C02p14500 Brassica napus HOM05D000291 ORTHO05D000879 5.7e-06 54.3 42 71.4
BolC2t07574H Brassica oleracea HOM05D000291 ORTHO05D000879 5.7e-06 54.3 42 71.4
FAN12G3828 Fragaria x ananassa HOM05D000291 ORTHO05D000879 5.7e-06 54.3 41 73.2
RcHm_v2.0_Chr4g0399681 Rosa chinensis HOM05D000291 ORTHO05D000879 5.7e-06 54.3 31 83.9
Sp7g23950 Schrenkiella parvula HOM05D000291 ORTHO05D000879 5.7e-06 54.3 33 78.8
Thhalv10024721m.g Eutrema salsugineum HOM05D000291 ORTHO05D000879 7.5e-06 53.9 33 78.8
AT5G57200 Arabidopsis thaliana HOM05D000291 ORTHO05D000879 9.8e-06 53.5 42 66.7
DCAR_005820 Daucus carota HOM05D000291 ORTHO05D000879 9.8e-06 53.5 45 64.4


User provided reference genes

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