Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003252 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 4.0e-44 181.0 90 100.0
CSS0026502 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 8.9e-36 153.3 78 98.7
CSS0032221 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 8.9e-28 126.7 76 80.3
CSS0024088 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 7.5e-27 123.6 76 78.9
CiPaw.08G147100 Carya illinoinensis HOM05D005427 ORTHO05D006461 1.1e-25 119.8 78 74.4
Dinv21205 Davidia involucrata HOM05D005427 ORTHO05D006461 9.2e-25 116.7 78 74.4
GSVIVG01017423001 Vitis vinifera HOM05D005427 ORTHO05D006461 1.2e-24 116.3 75 74.7
TAR628G1492 Trochodendron aralioides HOM05D001631 ORTHO05D001591 2.1e-24 115.5 82 70.7
Thecc.01G082100 Theobroma cacao HOM05D005427 ORTHO05D006461 2.7e-24 115.2 83 67.5
Atru.chr3.1127 Acer truncatum HOM05D005427 ORTHO05D006461 1.0e-23 113.2 75 69.3
Atru.chr3.1136 Acer truncatum HOM05D005427 ORTHO05D006461 1.0e-23 113.2 75 69.3
Dinv36993 Davidia involucrata HOM05D005427 ORTHO05D006461 1.0e-23 113.2 78 73.1
Rhsim07G0122400 Rhododendron simsii HOM05D005427 ORTHO05D006461 1.0e-23 113.2 76 69.7
Nn1g05775 Nelumbo nucifera HOM05D005427 ORTHO05D006461 1.3e-23 112.8 75 70.7
QL06p037683 Quercus lobata HOM05D005427 ORTHO05D006461 8.6e-23 110.2 76 65.8
TWI74G0676 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 1.1e-22 109.8 89 58.4
Ciclev10026408m.g Citrus clementina HOM05D005427 ORTHO05D006461 1.5e-22 109.4 78 70.5
Rhsim10G0082400 Rhododendron simsii HOM05D005427 ORTHO05D006461 1.5e-22 109.4 76 68.4
Migut.F01758 Erythranthe guttata HOM05D005427 ORTHO05D006461 1.9e-22 109.0 81 67.9
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 3.3e-22 108.2 78 70.5
Manes.13G105100 Manihot esculenta HOM05D005427 ORTHO05D006461 3.3e-22 108.2 88 61.4
Cc09_g03000 Coffea canephora HOM05D005427 ORTHO05D006461 4.3e-22 107.8 76 68.4
DCAR_006436 Daucus carota HOM05D005427 ORTHO05D006461 5.6e-22 107.5 83 67.5
Gohir.D11G216500 Gossypium hirsutum HOM05D005427 ORTHO05D006461 5.6e-22 107.5 83 63.9
Gorai.007G232600 Gossypium raimondii HOM05D005427 ORTHO05D006461 5.6e-22 107.5 83 63.9
Prupe.6G211100 Prunus persica HOM05D005427 ORTHO05D006461 1.2e-21 106.3 78 66.7
HanXRQChr12g0368771 Helianthus annuus HOM05D005427 ORTHO05D006461 2.1e-21 105.5 77 66.2
Lsat_1_v5_gn_8_18901 Lactuca sativa HOM05D005427 ORTHO05D006461 2.1e-21 105.5 78 65.4
Potri.017G091300 Populus trichocarpa HOM05D005427 ORTHO05D006461 2.1e-21 105.5 73 69.9
Eucgr.H02348 Eucalyptus grandis HOM05D005427 ORTHO05D006461 3.6e-21 104.8 78 64.1
Gohir.A11G206966 Gossypium hirsutum HOM05D005427 ORTHO05D006461 4.7e-21 104.4 83 63.9
ECA233G5189 Erigeron canadensis HOM05D005427 ORTHO05D006461 8.1e-21 103.6 78 61.5
Aqoxy3G03178 Aquilegia oxysepala HOM05D005427 ORTHO05D006461 1.1e-20 103.2 76 64.5
PGR102G2470 Punica granatum HOM05D005427 ORTHO05D006461 1.1e-20 103.2 76 63.2
vmacro05473 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 1.4e-20 102.8 83 59.0
vmacro07282 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 1.4e-20 102.8 83 57.8
Cpa.g.sc3.369 Carica papaya HOM05D005427 ORTHO05D006461 1.2e-19 99.8 90 54.4
COL.COLO4_11665 Corchorus olitorius HOM05D005427 ORTHO05D006461 1.2e-19 99.8 84 59.5
Cfa001616 Carpinus fangiana HOM05D005427 ORTHO05D006461 2.0e-19 99.0 78 57.7
Solyc09g008680.4 Solanum lycopersicum HOM05D005427 ORTHO05D006461 2.0e-19 99.0 88 56.8
MD00G1139600 Malus domestica HOM05D005427 ORTHO05D006461 3.4e-19 98.2 58 82.8
MD04G1240700 Malus domestica HOM05D005427 ORTHO05D006461 3.4e-19 98.2 58 82.8
Sopen09g003480 Solanum pennellii HOM05D005427 ORTHO05D006461 7.6e-19 97.1 90 57.8
RcHm_v2.0_Chr2g0109701 Rosa chinensis HOM05D005427 ORTHO05D006461 9.9e-19 96.7 77 62.3
AT3G49645 Arabidopsis thaliana HOM05D005427 ORTHO05D006461 1.3e-18 96.3 82 57.3
RcHm_v2.0_Chr5g0054161 Rosa chinensis HOM05D005427 ORTHO05D006461 1.3e-18 96.3 77 62.3
Actinidia11934 Actinidia chinensis HOM05D005427 ORTHO05D006461 1.7e-18 95.9 78 66.7
Nitab4.5_0004281g0090 Nicotiana tabacum HOM05D005427 ORTHO05D006461 2.2e-18 95.5 81 56.8
PGSC0003DMG400012980 Solanum tuberosum HOM05D005427 ORTHO05D006461 2.2e-18 95.5 83 59.0
AL7G47510 Arabidopsis lyrata HOM05D005427 ORTHO05D006461 2.9e-18 95.1 82 57.3
Peaxi162Scf00500g00116 Petunia axillaris HOM05D005427 ORTHO05D006461 3.8e-18 94.7 76 59.2
Thhalv10019696m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 6.4e-18 94.0 87 55.2
TAR376G0349 Trochodendron aralioides HOM05D005427 ORTHO05D006461 8.4e-18 93.6 62 71.0
EL10Ac9g20957 Beta vulgaris HOM05D005427 ORTHO05D006461 1.1e-17 93.2 75 65.3
CANSAT01G2304 Cannabis sativa HOM05D005427 ORTHO05D006461 1.4e-17 92.8 91 56.0
Peaxi162Scf01051g00142 Petunia axillaris HOM05D005427 ORTHO05D006461 1.9e-17 92.4 82 57.3
Carub.0005s1599 Capsella rubella HOM05D005427 ORTHO05D006461 5.4e-17 90.9 76 56.6
Lalb_Chr04g0263231 Lupinus albus HOM05D005427 ORTHO05D006461 7.1e-17 90.5 78 55.1
THA.LOC104819282 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 7.1e-17 90.5 93 48.4
Ah.01g003640 Amaranthus hybridus HOM05D000109 ORTHO05D000520 9.2e-17 90.1 84 54.8
CARHR158680 Cardamine hirsuta HOM05D005427 ORTHO05D006461 9.2e-17 90.1 77 55.8
Thhalv10010700m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 9.2e-17 90.1 76 59.2
Carub.0005s0959 Capsella rubella HOM05D005427 ORTHO05D006461 1.6e-16 89.4 76 56.6
CsaV3_7G007450 Cucumis sativus L. HOM05D005427 ORTHO05D006461 1.6e-16 89.4 91 48.4
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 2.1e-16 89.0 81 58.0
FvH4_1g18830 Fragaria vesca HOM05D005427 ORTHO05D006461 2.1e-16 89.0 71 62.0
FAN26G2664 Fragaria x ananassa HOM05D005427 ORTHO05D006461 2.1e-16 89.0 71 62.0
ClCG09G016510 Citrullus lanatus HOM05D005427 ORTHO05D006461 2.7e-16 88.6 74 56.8
BcaC01g02424 Brassica carinata HOM05D005427 ORTHO05D006461 3.5e-16 88.2 83 51.8
A06p28350 Brassica napus HOM05D005427 ORTHO05D006461 3.5e-16 88.2 83 51.8
C03p65440 Brassica napus HOM05D005427 ORTHO05D006461 3.5e-16 88.2 83 51.8
BolC3t18796H Brassica oleracea HOM05D005427 ORTHO05D006461 3.5e-16 88.2 83 51.8
BraA06t25777Z Brassica rapa HOM05D005427 ORTHO05D006461 3.5e-16 88.2 83 51.8
A07p22100 Brassica napus HOM05D005427 ORTHO05D006461 4.6e-16 87.8 83 49.4
BraA07t29893Z Brassica rapa HOM05D005427 ORTHO05D006461 4.6e-16 87.8 83 49.4
FAN23G0196 Fragaria x ananassa HOM05D005427 ORTHO05D006461 4.6e-16 87.8 71 60.6
FAN27G1155 Fragaria x ananassa HOM05D005427 ORTHO05D006461 6.0e-16 87.4 70 61.4
BcaB01g00686 Brassica carinata HOM05D005427 ORTHO05D006461 7.8e-16 87.0 78 50.0
BcaC07g39428 Brassica carinata HOM05D005427 ORTHO05D006461 7.8e-16 87.0 80 51.2
Sed0018601 Sechium edule HOM05D005427 ORTHO05D006461 7.8e-16 87.0 78 51.3
CAN.G1830.8 Capsicum annuum HOM05D005427 ORTHO05D006461 1.0e-15 86.7 65 66.2
AUR62041740 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.0e-15 86.7 77 58.4
FAN19G1732 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.0e-15 86.7 71 60.6
Lj3g0020172 Lotus japonicus HOM05D005427 ORTHO05D006461 1.0e-15 86.7 57 71.9
SGA_v2.0_scaffold70G23436 Striga asiatica HOM05D005427 ORTHO05D006461 1.0e-15 86.7 65 66.2
MBI16_g26727_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 1.3e-15 86.3 64 64.1
Ah.01g015840 Amaranthus hybridus HOM05D005427 ORTHO05D006461 1.7e-15 85.9 81 56.8
THA.LOC104799739 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 3.9e-15 84.7 78 51.3
Phvul.003G285800 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 5.1e-15 84.3 76 55.3
SGA_v2.0_scaffold147G36350 Striga asiatica HOM05D005427 ORTHO05D006461 5.1e-15 84.3 70 58.6
Phvul.002G065300 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 6.6e-15 84.0 76 55.3
Phvul.003G285200 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 6.6e-15 84.0 76 53.9
Aa31LG4G18120 Aethionema arabicum HOM05D005427 ORTHO05D006461 8.7e-15 83.6 83 49.4
Psat4g120800 Pisum sativum HOM05D005427 ORTHO05D006461 1.5e-14 82.8 64 60.9
SGA_v2.0_scaffold4G02171 Striga asiatica HOM05D005427 ORTHO05D006461 1.5e-14 82.8 70 60.0
TPR.G15264 Trifolium pratense HOM05D005427 ORTHO05D006461 1.5e-14 82.8 64 59.4
MELO3C018556.2 Cucumis melo HOM05D005427 ORTHO05D006461 2.5e-14 82.0 76 52.6
AUR62024067 Chenopodium quinoa HOM05D005427 ORTHO05D006461 3.3e-14 81.6 75 57.3
VMungo1309G2225 Vigna mungo HOM05D005427 ORTHO05D006461 3.3e-14 81.6 63 61.9
AUR62019836 Chenopodium quinoa HOM05D005427 ORTHO05D006461 4.3e-14 81.3 75 56.0
Glyma.08G273000 Glycine max HOM05D005427 ORTHO05D006461 4.3e-14 81.3 82 51.2
AL5G29490 Arabidopsis lyrata HOM05D007023 ORTHO05D008684 5.6e-14 80.9 63 65.1
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 5.6e-14 80.9 75 54.7
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 7.3e-14 80.5 75 54.7
Sp5g12450 Schrenkiella parvula HOM05D005427 ORTHO05D006461 7.3e-14 80.5 80 50.0
Hund15020 Selenicereus undatus HOM05D005427 ORTHO05D006461 9.6e-14 80.1 72 52.8
Glyma.20G162400 Glycine max HOM05D005427 ORTHO05D006461 1.6e-13 79.3 82 51.2
Sc06g0009050 Simmondsia chinensis HOM05D005427 ORTHO05D006461 1.6e-13 79.3 75 54.7
AUR62012052 Chenopodium quinoa HOM05D005427 ORTHO05D006461 2.1e-13 79.0 56 69.6
Hund13132 Selenicereus undatus HOM05D005427 ORTHO05D006461 2.1e-13 79.0 72 52.8
BcaB02g09598 Brassica carinata HOM05D005427 ORTHO05D006461 2.8e-13 78.6 80 47.5
A06p18060 Brassica napus HOM05D007023 ORTHO05D008684 4.7e-13 77.8 75 50.7
Hund00873 Selenicereus undatus HOM05D005427 ORTHO05D006461 1.1e-12 76.6 76 50.0
Medtr8g067265 Medicago truncatula HOM05D005427 ORTHO05D006461 1.4e-12 76.3 66 54.5
PSO761G0697 Papaver somniferum HOM05D005427 ORTHO05D006461 1.8e-12 75.9 86 46.5
BraA06t24896Z Brassica rapa HOM05D007023 ORTHO05D008684 4.0e-12 74.7 75 49.3
PSO210G5957 Papaver somniferum HOM05D005427 ORTHO05D006461 5.3e-12 74.3 86 46.5
HPP92_024834 Vanilla planifolia HOM05D005427 ORTHO05D006461 2.0e-11 72.4 75 42.7
HPP92_026626 Vanilla planifolia HOM05D005427 ORTHO05D006461 2.0e-11 72.4 75 42.7
Zm00001eb064010 Zea mays HOM05D005427 ORTHO05D006461 2.6e-11 72.0 79 41.8
Zm00001eb210960 Zea mays HOM05D005427 ORTHO05D006461 5.8e-11 70.9 62 48.4
C08p24660 Brassica napus HOM05D007023 ORTHO05D008684 7.6e-11 70.5 66 54.5
BolC8t50081H Brassica oleracea HOM05D007023 ORTHO05D008684 7.6e-11 70.5 66 54.5
Os10g0360900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 1.3e-10 69.7 62 43.5
Haze_16903 Corylus avellana HOM05D005427 ORTHO05D006461 2.9e-10 68.6 44 65.9
Os07g0264900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 2.4e-09 65.5 77 39.0
SEGI_00262 Sequoiadendron giganteum HOM05D005427 ORTHO05D006461 2.4e-09 65.5 62 46.8
AagrBONN_evm.TU.Sc2ySwM_344.3300 Anthoceros agrestis HOM05D005427 ORTHO05D006461 7.1e-09 63.9 76 39.5
SMO367G1008 Selaginella moellendorffii HOM05D005427 ORTHO05D006461 9.3e-09 63.5 54 48.1
AagrBONN_evm.TU.Sc2ySwM_228.2937 Anthoceros agrestis HOM05D005427 ORTHO05D006461 1.2e-08 63.2 76 38.2
Pp3c24_9930 Physcomitrium patens HOM05D005427 ORTHO05D006461 1.3e-07 59.7 57 42.1
Mapoly0002s0147 Marchantia polymorpha HOM05D005427 ORTHO05D006461 1.1e-06 56.6 62 41.9


User provided reference genes

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