Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003239 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 5.2e-96 354.4 178 100.0
CSS0014814 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 5.7e-95 350.9 178 98.9
vmacro01564 Vaccinium macrocarpon HOM05D001340 ORTHO05D005342 3.3e-58 228.8 155 73.5
Rhsim11G0095300 Rhododendron simsii HOM05D001340 ORTHO05D005342 9.9e-55 217.2 155 73.5
Dinv30896 Davidia involucrata HOM05D000961 ORTHO05D000841 4.2e-53 211.8 189 62.4
Dinv24447 Davidia involucrata HOM05D000961 ORTHO05D000841 1.6e-52 209.9 186 62.9
Actinidia35520 Actinidia chinensis HOM05D001340 ORTHO05D005342 1.1e-50 203.8 152 71.1
Hma1.2p1_0008F-1.1_g005585 Hydrangea macrophylla HOM05D001340 ORTHO05D005342 7.4e-50 201.1 152 67.8
Cfa006706 Carpinus fangiana HOM05D001340 ORTHO05D002318 1.3e-43 180.3 153 64.1
CANSAT54G2301 Cannabis sativa HOM05D001340 ORTHO05D005342 3.9e-43 178.7 153 60.8
TAR633G1496 Trochodendron aralioides HOM05D000961 ORTHO05D000841 5.1e-43 178.3 190 53.7
QL03p013901 Quercus lobata HOM05D001340 ORTHO05D005342 5.6e-42 174.9 152 61.8
Sc09g0002630 Simmondsia chinensis HOM05D001340 ORTHO05D005342 9.6e-42 174.1 152 59.2
COL.COLO4_05548 Corchorus olitorius HOM05D001340 ORTHO05D005342 1.6e-41 173.3 147 61.9
Haze_04058 Corylus avellana HOM05D001340 ORTHO05D005342 6.2e-41 171.4 158 61.4
Manes.09G177200 Manihot esculenta HOM05D001340 ORTHO05D005342 1.1e-40 170.6 153 60.8
CiPaw.08G155200 Carya illinoinensis HOM05D001340 ORTHO05D005342 4.0e-40 168.7 152 61.2
Gohir.A11G273700 Gossypium hirsutum HOM05D001340 ORTHO05D005342 4.0e-40 168.7 151 60.9
HanXRQChr06g0173421 Helianthus annuus HOM05D001340 ORTHO05D005342 6.9e-40 167.9 181 54.7
Oeu000006.2 Olea europaea HOM05D001340 ORTHO05D005342 6.9e-40 167.9 162 55.6
PGR083G1716 Punica granatum HOM05D001340 ORTHO05D005342 6.9e-40 167.9 152 59.2
DCAR_029350 Daucus carota HOM05D001340 ORTHO05D005342 9.0e-40 167.5 144 64.6
Gorai.007G306700 Gossypium raimondii HOM05D001340 ORTHO05D005342 9.0e-40 167.5 150 60.7
CsaV3_2G007140 Cucumis sativus L. HOM05D001340 ORTHO05D005342 3.4e-39 165.6 152 59.9
Prupe.6G312500 Prunus persica HOM05D001340 ORTHO05D002318 3.4e-39 165.6 151 56.3
GSVIVG01031244001 Vitis vinifera HOM05D001340 ORTHO05D002318 7.6e-39 164.5 155 57.4
Lj5C332T2 Lonicera japonica HOM05D001340 ORTHO05D005342 1.0e-38 164.1 112 75.9
SGA_v2.0_scaffold4G01971 Striga asiatica HOM05D001340 ORTHO05D005342 1.3e-38 163.7 154 55.2
RcHm_v2.0_Chr3g0457141 Rosa chinensis HOM05D001340 ORTHO05D005342 2.9e-38 162.5 152 56.6
Atru.chr2.201 Acer truncatum HOM05D001340 ORTHO05D005342 4.9e-38 161.8 147 61.2
Cpa.g.sc48.165 Carica papaya HOM05D001340 ORTHO05D005342 8.4e-38 161.0 153 58.8
Migut.B00963 Erythranthe guttata HOM05D001340 ORTHO05D005342 8.4e-38 161.0 162 52.5
Ciclev10003914m.g Citrus clementina HOM05D001340 ORTHO05D002318 1.9e-37 159.8 145 59.3
SalBow7G3618 Salvia bowleyana HOM05D001340 ORTHO05D005342 3.2e-37 159.1 163 52.8
MSTRG.20379 Avicennia marina HOM05D001340 ORTHO05D005342 4.2e-37 158.7 157 54.1
Eucgr.L00263 Eucalyptus grandis HOM05D001340 ORTHO05D005342 9.3e-37 157.5 152 58.6
FvH4_6g07471 Fragaria vesca HOM05D001340 ORTHO05D005342 1.2e-36 157.1 152 53.9
Nitab4.5_0007698g0020 Nicotiana tabacum HOM05D001340 ORTHO05D005342 1.2e-36 157.1 159 54.7
Sabra05G0022300 Salix brachista HOM05D001340 ORTHO05D005342 2.1e-36 156.4 155 56.8
MD12G1205500 Malus domestica HOM05D001340 ORTHO05D005342 3.5e-36 155.6 143 55.9
Sed0025878 Sechium edule HOM05D001340 ORTHO05D005342 4.6e-36 155.2 152 55.9
Nn4g25585 Nelumbo nucifera HOM05D001340 ORTHO05D005342 6.0e-36 154.8 183 47.0
TWI36G1129 Tripterygium wilfordii HOM05D001340 ORTHO05D005342 2.3e-35 152.9 143 56.6
THA.LOC104816892 Tarenaya hassleriana HOM05D001340 ORTHO05D005342 6.7e-35 151.4 148 56.1
Carub.0002s0770 Capsella rubella HOM05D001340 ORTHO05D005342 8.7e-35 151.0 152 55.3
Thhalv10023436m.g Eutrema salsugineum HOM05D001340 ORTHO05D005342 1.9e-34 149.8 153 54.9
Sp2g06370 Schrenkiella parvula HOM05D001340 ORTHO05D005342 1.9e-34 149.8 152 52.6
AT1G56440 Arabidopsis thaliana HOM05D001340 ORTHO05D005342 5.7e-34 148.3 154 54.5
EL10Ac4g09460 Beta vulgaris HOM05D001340 ORTHO05D005342 5.7e-34 148.3 142 56.3
Cc02_g35070 Coffea canephora HOM05D001340 ORTHO05D005342 5.7e-34 148.3 147 55.8
Sabra13G0007100 Salix brachista HOM05D001340 ORTHO05D005342 1.6e-33 146.7 187 48.1
PSO170G0183 Papaver somniferum HOM05D001340 ORTHO05D005342 2.2e-33 146.4 152 53.9
AUR62006743 Chenopodium quinoa HOM05D001340 ORTHO05D005342 4.8e-33 145.2 142 54.9
AL1G66140 Arabidopsis lyrata HOM05D001340 ORTHO05D005342 8.2e-33 144.4 154 53.9
Potri.013G008400 Populus trichocarpa HOM05D001340 ORTHO05D005342 8.2e-33 144.4 152 54.6
PSO357G0240 Papaver somniferum HOM05D001340 ORTHO05D005342 1.8e-32 143.3 152 53.3
Solyc10g045540.2 Solanum lycopersicum HOM05D001340 ORTHO05D005342 1.8e-32 143.3 161 50.9
Sopen10g015810 Solanum pennellii HOM05D001340 ORTHO05D005342 3.1e-32 142.5 161 50.9
Gohir.D11G283800 Gossypium hirsutum HOM05D001340 ORTHO05D005342 4.1e-32 142.1 150 55.3
BolC4t24084H Brassica oleracea HOM05D001340 ORTHO05D005342 9.0e-32 141.0 157 51.6
ClCG02G014870 Citrullus lanatus HOM05D001340 ORTHO05D005342 9.0e-32 141.0 139 56.1
BcaC02g10729 Brassica carinata HOM05D001340 ORTHO05D005342 1.5e-31 140.2 152 52.6
Nitab4.5_0000155g0120 Nicotiana tabacum HOM05D001340 ORTHO05D005342 5.9e-31 138.3 141 54.6
TAR706G0001 Trochodendron aralioides HOM05D001340 ORTHO05D005342 5.9e-31 138.3 106 67.0
Aa31LG2G11470 Aethionema arabicum HOM05D001340 ORTHO05D005342 7.6e-31 137.9 157 51.6
TPR.G2618 Trifolium pratense HOM05D001340 ORTHO05D005342 1.0e-30 137.5 140 55.7
BraA03t15714Z Brassica rapa HOM05D001340 ORTHO05D005342 1.3e-30 137.1 157 50.3
FAN05G0225 Fragaria x ananassa HOM05D001340 ORTHO05D005342 1.7e-30 136.7 137 54.7
Thecc.05G323400 Theobroma cacao HOM05D001340 ORTHO05D005342 1.7e-30 136.7 142 54.9
MBI19_g40070_MAGBIO Magnolia biondii HOM05D001340 ORTHO05D005342 2.2e-30 136.3 153 49.0
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 5.0e-30 135.2 154 51.3
Potri.005G014100 Populus trichocarpa HOM05D001340 ORTHO05D005342 5.0e-30 135.2 153 52.9
Sabra05G0021300 Salix brachista HOM05D001340 ORTHO05D005342 5.0e-30 135.2 155 52.9
Medtr1g084100 Medicago truncatula HOM05D001340 ORTHO05D005342 1.9e-29 133.3 140 54.3
C01p35320 Brassica napus HOM05D001340 ORTHO05D005342 2.5e-29 132.9 176 47.2
BolC1t03489H Brassica oleracea HOM05D001340 ORTHO05D005342 2.5e-29 132.9 176 47.2
BcaC09g49556 Brassica carinata HOM05D001340 ORTHO05D005342 4.2e-29 132.1 153 50.3
Aqoxy7G01123 Aquilegia oxysepala HOM05D001340 ORTHO05D005342 9.3e-29 131.0 153 52.3
Duzib106G0021 Durio zibethinus HOM05D001340 ORTHO05D005342 7.9e-28 127.9 117 59.8
Peaxi162Scf00595g00424 Petunia axillaris HOM05D001340 ORTHO05D005342 7.9e-28 127.9 132 53.0
A03p66580 Brassica napus HOM05D001340 ORTHO05D005342 3.9e-27 125.6 158 49.4
Lsat_1_v5_gn_9_121900 Lactuca sativa HOM05D001340 ORTHO05D005342 5.1e-27 125.2 163 45.4
FAN02G4226 Fragaria x ananassa HOM05D001340 ORTHO05D005342 8.8e-27 124.4 165 46.7
Lj5g0009841 Lotus japonicus HOM05D001340 ORTHO05D005342 5.7e-26 121.7 138 50.0
FAN14G4490 Fragaria x ananassa HOM05D001340 ORTHO05D005342 9.7e-26 120.9 132 49.2
FAN09G1839 Fragaria x ananassa HOM05D001340 ORTHO05D005342 1.3e-25 120.6 132 50.0
A01p27480 Brassica napus HOM05D001340 ORTHO05D005342 2.8e-25 119.4 153 47.1
BraA01t02887Z Brassica rapa HOM05D001340 ORTHO05D005342 2.8e-25 119.4 153 47.1
Ah.04g158660 Amaranthus hybridus HOM05D001340 ORTHO05D005342 6.3e-25 118.2 142 45.8
Glyma.10G146800 Glycine max HOM05D001340 ORTHO05D005342 1.4e-24 117.1 140 50.7
C04p27080 Brassica napus HOM05D001340 ORTHO05D005342 1.8e-24 116.7 157 46.5
ATR0796G093 Amborella trichopoda HOM05D001340 ORTHO05D005342 1.2e-23 114.0 154 44.8
AUR62000388 Chenopodium quinoa HOM05D001340 ORTHO05D005342 2.0e-23 113.2 101 58.4
arahy.Tifrunner.gnm1.ann1.6LPS1E Arachis hypogaea HOM05D001340 ORTHO05D005342 2.6e-23 112.8 158 46.2
CARHR055170 Cardamine hirsuta HOM05D001340 ORTHO05D005342 2.6e-23 112.8 151 47.7
Psat0s3278g0040 Pisum sativum HOM05D001340 ORTHO05D005342 3.4e-23 112.5 130 51.5
Sabra05G0010800 Salix brachista HOM05D001340 ORTHO05D005342 5.9e-23 111.7 134 51.5
VMungo0720G0959 Vigna mungo HOM05D001340 ORTHO05D005342 1.3e-22 110.5 139 48.9
BcaB04g20162 Brassica carinata HOM05D001340 ORTHO05D005342 1.7e-22 110.2 152 46.7
Lalb_Chr02g0147791 Lupinus albus HOM05D001340 ORTHO05D005342 1.9e-21 106.7 140 45.7
Ca_10175_v3 Cicer arietinum L. HOM05D001340 ORTHO05D005342 2.5e-21 106.3 107 58.9
CAN.G1.66 Capsicum annuum HOM05D001340 ORTHO05D005342 9.4e-21 104.4 80 67.5
Lj5g0005524 Lotus japonicus HOM05D001340 ORTHO05D005342 1.0e-19 100.9 75 70.7
Glyma.20G096900 Glycine max HOM05D001340 ORTHO05D005342 3.9e-19 99.0 107 57.0
Phvul.007G201600 Phaseolus vulgaris HOM05D001340 ORTHO05D005342 2.0e-18 96.7 105 54.3
Sabra01G0113700 Salix brachista HOM05D001340 ORTHO05D005342 5.7e-18 95.1 111 50.5
Peaxi162Scf00750g00034 Petunia axillaris HOM05D001340 ORTHO05D005342 9.7e-18 94.4 73 65.8
Glyma.06G236676 Glycine max HOM05D000961 ORTHO05D005342 2.2e-17 93.2 106 56.6
HPP92_013522 Vanilla planifolia HOM05D001340 ORTHO05D005342 8.2e-17 91.3 143 37.8
CDE01G0158 Ceratophyllum demersum HOM05D000961 ORTHO05D000841 1.2e-15 87.4 61 67.2
Os05g0129900 Oryza sativa ssp. japonica HOM05D001340 ORTHO05D005342 2.6e-15 86.3 58 69.0
BcaC06g31772 Brassica carinata HOM05D001340 ORTHO05D005342 3.4e-15 85.9 128 43.0
EL10Ac3g04962 Beta vulgaris HOM05D001340 ORTHO05D005342 4.5e-15 85.5 86 52.3
Sabra05G0021500 Salix brachista HOM05D001340 ORTHO05D005342 4.5e-15 85.5 136 42.6
Zm00001eb354870 Zea mays HOM05D001340 ORTHO05D005342 4.5e-15 85.5 80 53.8
Sabra05G0010300 Salix brachista HOM05D001340 ORTHO05D005342 1.3e-14 84.0 112 46.4
PSO675G7546 Papaver somniferum HOM05D001340 ORTHO05D005342 1.7e-14 83.6 51 78.4
SEGI_40234 Sequoiadendron giganteum HOM05D001340 ORTHO05D005342 2.9e-14 82.8 99 49.5
Pp3c24_17620 Physcomitrium patens HOM05D001340 ORTHO05D005342 5.0e-14 82.0 133 39.1
SMO119G0158 Selaginella moellendorffii HOM05D001340 ORTHO05D005342 1.4e-13 80.5 184 33.2
CBR_g18648 Chara braunii HOM05D001340 ORTHO05D005342 7.2e-13 78.2 65 58.5
CBR_g3787 Chara braunii HOM05D001340 ORTHO05D005342 9.4e-13 77.8 55 63.6
Mapoly0127s0050 Marchantia polymorpha HOM05D001340 ORTHO05D005342 9.4e-13 77.8 70 55.7
CBR_g48354 Chara braunii HOM05D001340 ORTHO05D005342 4.7e-12 75.5 55 61.8
AagrBONN_evm.TU.Sc2ySwM_340.376 Anthoceros agrestis HOM05D001340 ORTHO05D005342 1.0e-11 74.3 225 28.4
AUR62015688 Chenopodium quinoa HOM05D001340 ORTHO05D005342 2.0e-10 70.1 49 71.4
Hund07313 Selenicereus undatus HOM05D001340 ORTHO05D005342 7.4e-10 68.2 138 39.1
AUR62031620 Chenopodium quinoa HOM05D001340 ORTHO05D005342 3.7e-09 65.9 49 69.4
CBR_g45761 Chara braunii HOM05D001340 ORTHO05D005342 3.1e-08 62.8 55 52.7
unitig_46.g18366 Utricularia gibba HOM05D001340 ORTHO05D005342 9.1e-08 61.2 156 29.5
EL10Ac1g01661 Beta vulgaris HOM05D001340 ORTHO05D005342 1.2e-07 60.8 49 65.3
Hund23305 Selenicereus undatus HOM05D001340 ORTHO05D011069 3.5e-07 59.3 47 66.0
AUR62020541 Chenopodium quinoa HOM05D001340 ORTHO05D005342 1.7e-06 57.0 49 59.2
AUR62020511 Chenopodium quinoa HOM05D001340 ORTHO05D011069 2.2e-06 56.6 50 56.0
PSO541G4969 Papaver somniferum HOM05D001340 ORTHO05D005342 6.5e-06 55.1 33 78.8
AUR62015660 Chenopodium quinoa HOM05D001340 ORTHO05D005342 8.5e-06 54.7 68 47.1


User provided reference genes

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