Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003227 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 5.6e-245 850.5 435 100.0
Rhsim07G0199300 Rhododendron simsii HOM05D001663 ORTHO05D005717 2.7e-186 655.6 380 88.9
RhsimUnG0073000 Rhododendron simsii HOM05D001663 ORTHO05D005717 1.3e-185 653.3 380 88.7
vmacro04774 Vaccinium macrocarpon HOM05D001663 ORTHO05D005717 4.7e-183 644.8 376 88.3
Dinv44724 Davidia involucrata HOM05D001663 ORTHO05D005717 7.5e-181 637.5 376 87.2
CSS0006833 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 4.6e-178 628.2 377 87.0
FvH4_5g38340 Fragaria vesca HOM05D001663 ORTHO05D005717 2.8e-175 619.0 377 82.5
FAN18G1299 Fragaria x ananassa HOM05D001663 ORTHO05D005717 2.8e-175 619.0 377 82.5
FAN04G0194 Fragaria x ananassa HOM05D001663 ORTHO05D005717 4.7e-175 618.2 375 82.7
FAN08G2783 Fragaria x ananassa HOM05D001663 ORTHO05D005717 4.0e-174 615.1 377 82.2
Prupe.1G508500 Prunus persica HOM05D001663 ORTHO05D005717 3.4e-173 612.1 375 81.9
TAR376G0684 Trochodendron aralioides HOM05D001663 ORTHO05D005717 4.4e-173 611.7 376 83.2
Manes.18G101600 Manihot esculenta HOM05D001663 ORTHO05D005717 2.9e-172 609.0 375 81.1
Nn1g05239 Nelumbo nucifera HOM05D001663 ORTHO05D005717 9.2e-171 604.0 378 82.5
GSVIVG01008963001 Vitis vinifera HOM05D001663 ORTHO05D005717 9.2e-171 604.0 376 82.2
COL.COLO4_16510 Corchorus olitorius HOM05D001663 ORTHO05D005717 1.0e-169 600.5 376 81.4
HanXRQChr05g0162261 Helianthus annuus HOM05D001663 ORTHO05D005717 3.0e-169 599.0 377 81.7
Ciclev10001001m.g Citrus clementina HOM05D001663 ORTHO05D005717 3.9e-169 598.6 375 81.1
Lj1g0004140 Lotus japonicus HOM05D001663 ORTHO05D005717 3.9e-169 598.6 375 81.9
Ca_26536_v3 Cicer arietinum L. HOM05D001663 ORTHO05D005717 1.1e-168 597.0 375 81.1
Cc10_g06030 Coffea canephora HOM05D001663 ORTHO05D005717 1.1e-168 597.0 377 79.6
Hma1.2p1_0529F.1_g173150 Hydrangea macrophylla HOM05D001663 ORTHO05D005717 9.5e-168 594.0 382 80.9
Glyma.14G167200 Glycine max HOM05D001663 ORTHO05D005717 1.1e-166 590.5 375 80.0
Nitab4.5_0001915g0140 Nicotiana tabacum HOM05D001663 ORTHO05D005717 3.1e-166 589.0 384 79.2
Nn5g28968 Nelumbo nucifera HOM05D001663 ORTHO05D005717 5.2e-166 588.2 376 79.5
Sabra02G0071900 Salix brachista HOM05D001663 ORTHO05D005717 5.2e-166 588.2 375 78.9
Atru.chr13.1295 Acer truncatum HOM05D001663 ORTHO05D005717 6.8e-166 587.8 382 79.3
Lalb_Chr10g0102081 Lupinus albus HOM05D001663 ORTHO05D005717 6.8e-166 587.8 373 80.2
Nitab4.5_0004952g0050 Nicotiana tabacum HOM05D001663 ORTHO05D005717 8.9e-166 587.4 384 78.6
Migut.C00211 Erythranthe guttata HOM05D001663 ORTHO05D005717 1.2e-165 587.0 380 79.7
Duzib041G0602 Durio zibethinus HOM05D001663 ORTHO05D005717 1.5e-165 586.6 376 79.0
MD15G1361100 Malus domestica HOM05D001663 ORTHO05D005717 2.0e-165 586.3 376 80.9
ECA246G3782 Erigeron canadensis HOM05D001663 ORTHO05D005717 2.6e-165 585.9 377 81.2
Medtr5g061040 Medicago truncatula HOM05D001663 ORTHO05D005717 4.4e-165 585.1 375 79.5
TPR.G30426 Trifolium pratense HOM05D001663 ORTHO05D005717 1.3e-164 583.6 375 80.3
Solyc04g072440.4 Solanum lycopersicum HOM05D001663 ORTHO05D005717 1.7e-164 583.2 384 78.4
Sopen04g028600 Solanum pennellii HOM05D001663 ORTHO05D005717 1.7e-164 583.2 384 78.4
Thecc.08G114700 Theobroma cacao HOM05D001663 ORTHO05D005717 1.7e-164 583.2 376 79.0
PGSC0003DMG400027563 Solanum tuberosum HOM05D001663 ORTHO05D005717 4.9e-164 581.6 384 78.1
Phvul.008G169200 Phaseolus vulgaris HOM05D001663 ORTHO05D005717 8.3e-164 580.9 376 79.8
Gorai.005G092500 Gossypium raimondii HOM05D001663 ORTHO05D005717 1.4e-163 580.1 376 78.7
PSO447G0047 Papaver somniferum HOM05D001663 ORTHO05D005717 1.9e-163 579.7 375 77.9
TWI12G1423 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 2.4e-163 579.3 394 75.9
PSO210G6007 Papaver somniferum HOM05D001663 ORTHO05D005717 3.2e-163 578.9 375 77.9
Duzib093G0504 Durio zibethinus HOM05D001663 ORTHO05D005717 4.1e-163 578.6 376 77.9
Lalb_Chr04g0253241 Lupinus albus HOM05D001663 ORTHO05D005717 4.1e-163 578.6 375 79.2
arahy.Tifrunner.gnm1.ann1.7M6WCL Arachis hypogaea HOM05D001663 ORTHO05D005717 9.2e-163 577.4 376 79.5
Gohir.A02G075400 Gossypium hirsutum HOM05D001663 ORTHO05D005717 1.6e-162 576.6 376 77.9
Gohir.D05G269900 Gossypium hirsutum HOM05D001663 ORTHO05D005717 2.1e-162 576.2 376 76.9
Gorai.009G282600 Gossypium raimondii HOM05D001663 ORTHO05D005717 2.1e-162 576.2 376 76.9
MD08G1174500 Malus domestica HOM05D001663 ORTHO05D005717 2.7e-162 575.9 375 78.9
CAN.G617.5 Capsicum annuum HOM05D001663 ORTHO05D005717 6.0e-162 574.7 384 76.8
Eucgr.H00930 Eucalyptus grandis HOM05D001663 ORTHO05D005717 1.0e-161 573.9 376 77.4
Potri.002G090900 Populus trichocarpa HOM05D001663 ORTHO05D005717 1.7e-161 573.2 375 77.9
Cpa.g.sc1782.1 Carica papaya HOM05D001663 ORTHO05D005717 2.8e-159 565.8 375 77.9
Glyma.13G085400 Glycine max HOM05D001663 ORTHO05D005717 3.6e-159 565.5 372 78.2
Sc18g0007560 Simmondsia chinensis HOM05D001663 ORTHO05D005717 1.1e-158 563.9 377 74.8
Aqoxy3G00244 Aquilegia oxysepala HOM05D001663 ORTHO05D005717 3.1e-158 562.4 405 72.6
DCAR_003554 Daucus carota HOM05D001663 ORTHO05D005717 3.1e-158 562.4 370 77.8
TWI56G1202 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 5.2e-158 561.6 375 76.0
Thhalv10028627m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 1.2e-157 560.5 376 76.1
QL12p035556 Quercus lobata HOM05D001663 ORTHO05D005717 7.6e-157 557.8 378 76.5
FAN13G3230 Fragaria x ananassa HOM05D001663 ORTHO05D005717 1.4e-155 553.5 385 74.3
EL10Ac8g18308 Beta vulgaris HOM05D001663 ORTHO05D005717 1.9e-155 553.1 377 74.0
Aa31LG9G14450 Aethionema arabicum HOM05D001663 ORTHO05D005717 3.2e-155 552.4 376 75.5
CiPaw.05G231300 Carya illinoinensis HOM05D001663 ORTHO05D005717 3.2e-155 552.4 377 76.4
Actinidia29571 Actinidia chinensis HOM05D001663 ORTHO05D005717 4.2e-155 552.0 370 79.5
Psat2g076640 Pisum sativum HOM05D001663 ORTHO05D005717 1.2e-154 550.4 376 76.9
Sp6g09330 Schrenkiella parvula HOM05D001663 ORTHO05D005717 2.1e-154 549.7 376 74.5
Ah.09g230050 Amaranthus hybridus HOM05D001663 ORTHO05D005717 6.0e-154 548.1 377 74.8
CANSAT25G1457 Cannabis sativa HOM05D001663 ORTHO05D005717 6.0e-154 548.1 379 73.9
Dinv13062 Davidia involucrata HOM05D001663 ORTHO05D005717 7.8e-154 547.7 337 84.3
MSTRG.947 Avicennia marina HOM05D001663 ORTHO05D005717 1.7e-153 546.6 384 73.4
Gohir.D02G082500 Gossypium hirsutum HOM05D001663 ORTHO05D005717 2.3e-153 546.2 376 75.0
THA.LOC104816946 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 6.6e-153 544.7 376 74.2
MSTRG.24955 Avicennia marina HOM05D001663 ORTHO05D005717 1.5e-152 543.5 382 74.1
PGR042G1550 Punica granatum HOM05D001663 ORTHO05D005717 6.2e-151 538.1 376 73.4
THA.LOC104813136 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 8.1e-151 537.7 376 73.4
A09p30170 Brassica napus HOM05D001663 ORTHO05D005717 4.0e-150 535.4 376 72.1
BcaC04g20910 Brassica carinata HOM05D001663 ORTHO05D005717 6.9e-150 534.6 376 72.3
C09p38040 Brassica napus HOM05D001663 ORTHO05D005717 6.9e-150 534.6 376 72.3
BolC9t56640H Brassica oleracea HOM05D001663 ORTHO05D005717 6.9e-150 534.6 376 72.3
Lsat_1_v5_gn_6_102021 Lactuca sativa HOM05D001663 ORTHO05D005717 6.9e-150 534.6 378 74.1
AT4G08540 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 1.2e-149 533.9 377 71.9
RcHm_v2.0_Chr7g0240361 Rosa chinensis HOM05D001663 ORTHO05D005717 1.5e-149 533.5 320 83.8
BcaB01g01352 Brassica carinata HOM05D001663 ORTHO05D005717 3.4e-149 532.3 376 72.3
SalBow7G1241 Salvia bowleyana HOM05D001663 ORTHO05D005717 9.9e-149 530.8 435 67.1
CARHR259570 Cardamine hirsuta HOM05D001663 ORTHO05D005717 1.4e-147 526.9 376 71.0
Haze_00550 Corylus avellana HOM05D001663 ORTHO05D005717 1.5e-144 516.9 376 74.2
Carub.0006s2708 Capsella rubella HOM05D001663 ORTHO05D005717 3.3e-144 515.8 376 70.5
Peaxi162Scf00756g00434 Petunia axillaris HOM05D001663 ORTHO05D005717 3.3e-144 515.8 384 70.6
ClCG11G008030 Citrullus lanatus HOM05D001663 ORTHO05D005717 5.6e-144 515.0 382 70.2
SGA_v2.0_scaffold48G18009 Striga asiatica HOM05D001663 ORTHO05D005717 7.1e-139 498.0 385 69.1
MELO3C008130.2 Cucumis melo HOM05D001663 ORTHO05D005717 1.3e-137 493.8 375 68.8
CsaV3_2G033570 Cucumis sativus L. HOM05D001663 ORTHO05D005717 5.6e-136 488.4 375 68.3
Lj6A263G20 Lonicera japonica HOM05D001663 ORTHO05D005717 3.1e-134 482.6 376 69.7
AUR62033240 Chenopodium quinoa HOM05D001663 ORTHO05D005717 4.0e-134 482.3 320 76.2
Sed0003415 Sechium edule HOM05D001663 ORTHO05D005717 7.6e-133 478.0 376 66.8
AL6G42350 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 1.3e-132 477.2 376 67.3
Cfa015941 Carpinus fangiana HOM05D001663 ORTHO05D005717 1.9e-131 473.4 372 70.7
ATR0564G349 Amborella trichopoda HOM05D001663 ORTHO05D005717 1.1e-126 457.6 384 61.5
BraA09t38581Z Brassica rapa HOM05D001663 ORTHO05D005717 1.8e-126 456.8 476 54.8
HPP92_009232 Vanilla planifolia HOM05D001663 ORTHO05D005717 9.7e-120 434.5 373 58.4
Hund26324 Selenicereus undatus HOM05D001663 ORTHO05D005717 1.4e-118 430.6 281 76.5
Oeu035400.3 Olea europaea HOM05D001663 ORTHO05D005717 1.6e-114 417.2 514 49.4
AUR62021323 Chenopodium quinoa HOM05D001663 ORTHO05D005717 4.5e-109 399.1 377 59.2
Carub.0002s2479 Capsella rubella HOM05D001663 ORTHO05D005717 7.2e-107 391.7 377 56.8
AL2G38170 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 7.9e-106 388.3 377 55.7
C06p51850 Brassica napus HOM05D001663 ORTHO05D005717 4.4e-104 382.5 369 55.6
BolC6t40206H Brassica oleracea HOM05D001663 ORTHO05D005717 4.4e-104 382.5 375 54.9
A07p43160 Brassica napus HOM05D001663 ORTHO05D005717 9.7e-104 381.3 368 55.2
CARHR071380 Cardamine hirsuta HOM05D001663 ORTHO05D005717 1.7e-103 380.6 368 54.6
AT1G77890 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 2.4e-102 376.7 377 55.2
BraA07t31838Z Brassica rapa HOM05D001663 ORTHO05D005717 2.4e-102 376.7 375 54.1
Sp5g33060 Schrenkiella parvula HOM05D001663 ORTHO05D005717 1.5e-101 374.0 375 54.7
Aa31LG4G7980 Aethionema arabicum HOM05D001663 ORTHO05D005717 3.0e-97 359.8 397 51.4
BcaB03g15913 Brassica carinata HOM05D001663 ORTHO05D005717 3.0e-97 359.8 375 53.6
Gohir.A05G268300 Gossypium hirsutum HOM05D001663 ORTHO05D005717 3.0e-97 359.8 209 84.7
MBI02_g34272_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 1.5e-96 357.5 214 84.1
CDE05G2350 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 3.3e-96 356.3 243 73.7
VMungo0647G1200 Vigna mungo HOM05D001663 ORTHO05D005717 1.7e-95 354.0 227 78.9
arahy.Tifrunner.gnm1.ann1.ZLN6KV Arachis hypogaea HOM05D001663 ORTHO05D005717 1.7e-92 344.0 238 75.6
Actinidia33165 Actinidia chinensis HOM05D001663 ORTHO05D005717 9.4e-91 338.2 249 73.5
Zm00001eb109770 Zea mays HOM05D001663 ORTHO05D005717 9.4e-91 338.2 376 49.5
Os07g0626300 Oryza sativa ssp. japonica HOM05D001663 ORTHO05D005717 2.6e-88 330.1 375 49.3
unitig_747.g21547 Utricularia gibba HOM05D001663 ORTHO05D005717 2.2e-87 327.0 336 54.5
Zm00001eb327970 Zea mays HOM05D001663 ORTHO05D005717 6.8e-81 305.4 341 49.3
Thhalv10018451m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 2.0e-77 293.9 375 47.5
Pp3c5_11170 Physcomitrium patens HOM05D001663 ORTHO05D005717 1.9e-75 287.3 372 45.2
arahy.Tifrunner.gnm1.ann1.8X036G Arachis hypogaea HOM05D001663 ORTHO05D005717 8.6e-60 235.3 147 81.6
Mapoly0103s0077 Marchantia polymorpha HOM05D001663 ORTHO05D005717 4.7e-58 229.6 366 38.3
MBI02_g34271_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 5.8e-56 222.6 190 64.7
SEGI_31098 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 4.3e-51 206.5 202 54.0
BcaC08g47627 Brassica carinata HOM05D001663 ORTHO05D005717 7.6e-48 195.7 203 51.7
AagrBONN_evm.TU.Sc2ySwM_344.1096 Anthoceros agrestis HOM05D001663 ORTHO05D005717 1.5e-40 171.4 440 31.1
SEGI_08259 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 4.4e-40 169.9 184 50.5
CBR_g4197 Chara braunii HOM05D001663 ORTHO05D005717 3.8e-31 140.2 397 30.7
CDE05G1781 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 5.3e-17 93.2 88 53.4
Zm00001eb031630 Zea mays HOM05D001663 ORTHO05D005717 7.1e-14 82.8 143 34.3
SEGI_07227 Sequoiadendron giganteum HOM05D001663 ORTHO05D015595 8.2e-10 69.3 83 44.6
HanXRQChr01g0001151 Helianthus annuus HOM05D001663 ORTHO05D005717 5.9e-08 63.2 141 39.0


User provided reference genes

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