Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 4.1e-162 574.7 298 100.0
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 1.1e-77 294.3 274 63.1
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 8.5e-75 284.6 289 57.8
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 2.2e-59 233.4 262 53.4
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 1.4e-56 224.2 311 46.6
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 9.7e-55 218.0 311 45.0
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 1.8e-53 213.8 262 50.0
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 5.9e-52 208.8 291 46.4
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 7.7e-52 208.4 322 42.9
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 7.7e-52 208.4 322 43.2
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 7.7e-52 208.4 334 42.5
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 1.3e-51 207.6 322 42.9
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 9.8e-47 191.4 295 40.0
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 1.7e-46 190.7 281 44.8
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 6.3e-46 188.7 332 38.0
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 1.8e-45 187.2 312 39.7
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 3.1e-45 186.4 219 52.5
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 4.1e-45 186.0 318 39.3
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 9.1e-45 184.9 284 40.8
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 9.1e-45 184.9 295 41.0
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 1.6e-44 184.1 307 38.8
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 2.7e-44 183.3 330 37.0
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 3.5e-44 183.0 309 42.4
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 5.9e-44 182.2 307 40.1
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 1.3e-43 181.0 358 36.6
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 1.7e-43 180.6 294 40.8
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 2.9e-43 179.9 303 37.6
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 5.0e-43 179.1 304 40.8
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 7.2e-42 175.3 313 36.7
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 6.1e-41 172.2 303 37.3
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 6.1e-41 172.2 335 36.4
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 8.0e-41 171.8 325 36.6
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 1.5e-39 167.5 336 36.0
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 2.6e-39 166.8 324 36.7
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 2.6e-39 166.8 330 37.0
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 4.4e-39 166.0 336 34.5
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 4.4e-39 166.0 309 37.2
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 5.7e-39 165.6 253 41.5
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 5.7e-39 165.6 337 34.7
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 5.7e-39 165.6 337 34.4
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 5.7e-39 165.6 297 36.4
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 1.7e-38 164.1 337 34.1
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 3.7e-38 162.9 330 36.4
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 6.3e-38 162.2 328 37.2
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 1.8e-37 160.6 287 38.3
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 9.2e-37 158.3 325 34.8
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 4.5e-36 156.0 292 36.6
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 1.0e-35 154.8 311 35.4
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 2.3e-35 153.7 300 37.3
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 8.6e-35 151.8 320 31.2
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 5.6e-34 149.1 320 32.5
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 2.1e-33 147.1 264 39.0
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 2.8e-33 146.7 310 34.8
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 8.0e-33 145.2 226 38.5
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 1.4e-32 144.4 255 38.4
Rhsim06G0021600 Rhododendron simsii HOM05D005472 ORTHO05D005897 1.8e-32 144.1 341 34.9
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 2.3e-32 143.7 311 36.7
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 3.0e-32 143.3 322 31.1
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 6.8e-32 142.1 305 33.8
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 8.9e-32 141.7 339 33.0
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 3.4e-31 139.8 334 29.9
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 4.4e-31 139.4 329 31.9
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 4.4e-31 139.4 323 34.7
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 1.7e-30 137.5 316 32.3
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 1.7e-30 137.5 314 34.7
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 2.2e-30 137.1 303 34.7
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 3.7e-30 136.3 284 33.1
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 4.9e-30 136.0 303 34.7
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 6.4e-30 135.6 294 33.3
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 1.1e-29 134.8 315 32.7
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 1.4e-29 134.4 315 31.7
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 1.8e-29 134.0 284 33.1
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 3.2e-29 133.3 309 31.7
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 4.1e-29 132.9 337 30.3
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 7.0e-29 132.1 321 33.3
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 7.0e-29 132.1 310 32.6
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 3.5e-28 129.8 277 35.7
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 4.6e-28 129.4 314 31.8
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 5.9e-28 129.0 256 35.2
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 1.3e-27 127.9 340 30.9
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 3.9e-27 126.3 298 34.6
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 3.9e-27 126.3 315 31.1
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 3.9e-27 126.3 310 31.0
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 5.0e-27 125.9 270 34.4
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 8.6e-27 125.2 291 33.0
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 1.5e-26 124.4 294 33.0
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 1.9e-26 124.0 293 30.7
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 2.5e-26 123.6 181 39.8
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 3.3e-26 123.2 283 32.2
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 3.3e-26 123.2 264 32.6
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 5.6e-26 122.5 220 38.6
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 7.3e-26 122.1 293 32.1
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 7.3e-26 122.1 313 30.7
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 2.8e-25 120.2 294 32.3
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 2.8e-25 120.2 302 31.1
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 3.6e-25 119.8 283 32.2
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 1.0e-24 118.2 305 30.2
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 1.4e-24 117.9 304 28.9
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 1.8e-24 117.5 291 31.6
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 8.9e-24 115.2 288 30.9
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 1.2e-23 114.8 295 32.5
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 1.2e-23 114.8 312 34.0
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 3.4e-23 113.2 300 30.3
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 4.4e-23 112.8 314 30.6
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 5.8e-23 112.5 293 31.1
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 7.5e-23 112.1 300 31.3
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 9.8e-23 111.7 300 30.3
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 2.2e-22 110.5 226 32.7
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 2.2e-22 110.5 322 28.3
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 6.4e-22 109.0 282 30.9
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 2.4e-21 107.1 284 30.6
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 3.2e-21 106.7 281 32.0
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 5.4e-21 105.9 290 30.3
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 7.0e-21 105.5 281 31.7
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 2.0e-20 104.0 280 31.8
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 4.6e-20 102.8 199 33.7
CANSAT78G2470 Cannabis sativa HOM05D005472 ORTHO05D005897 1.3e-19 101.3 102 47.1
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 3.9e-19 99.8 313 27.8
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 1.5e-18 97.8 312 28.5
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 5.6e-18 95.9 326 27.9
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 1.4e-16 91.3 299 29.1
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 3.4e-15 86.7 204 36.3
ECA232G3880 Erigeron canadensis HOM05D005472 ORTHO05D005897 3.4e-15 86.7 190 30.5
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 7.1e-13 79.0 139 40.3
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 2.7e-12 77.0 289 27.7
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 4.6e-12 76.3 303 26.4
MD00G1092800 Malus domestica HOM05D005472 ORTHO05D005897 1.0e-11 75.1 96 35.4
Aqoxy5G01787 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 4.3e-10 69.7 116 33.6
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 4.7e-09 66.2 254 25.2
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 1.8e-08 64.3 140 33.6
MD08G1013200 Malus domestica HOM05D005472 ORTHO05D005897 5.2e-08 62.8 127 38.6
Aqoxy7G02104 Aquilegia oxysepala HOM05D003461 ORTHO05D005897 2.6e-07 60.5 105 32.4
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 3.8e-06 56.6 293 24.2


User provided reference genes

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