Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003210 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 6.4e-141 504.2 279 100.0
Actinidia28298 Actinidia chinensis HOM05D005991 ORTHO05D007408 2.4e-100 369.4 273 76.9
Rhsim02G0001600 Rhododendron simsii HOM05D005991 ORTHO05D007408 7.6e-94 347.8 255 78.0
Actinidia18486 Actinidia chinensis HOM05D005991 ORTHO05D007408 2.2e-93 346.3 273 74.0
Dinv05101 Davidia involucrata HOM05D005991 ORTHO05D007408 2.9e-93 345.9 260 74.6
vmacro19301 Vaccinium macrocarpon HOM05D005991 ORTHO05D007408 5.1e-90 335.1 255 76.1
Oeu009727.1 Olea europaea HOM05D005991 ORTHO05D007408 4.2e-84 315.5 264 69.3
GSVIVG01017637001 Vitis vinifera HOM05D005991 ORTHO05D007408 7.9e-83 311.2 272 67.6
MBI18_g36460_MAGBIO Magnolia biondii HOM05D005991 ORTHO05D007408 1.3e-82 310.5 280 65.4
Cfa015696 Carpinus fangiana HOM05D005991 ORTHO05D007408 1.5e-81 307.0 271 66.1
TAR633G0953 Trochodendron aralioides HOM05D005991 ORTHO05D007408 1.5e-81 307.0 267 68.5
Haze_00826 Corylus avellana HOM05D005991 ORTHO05D007408 3.3e-81 305.8 271 66.4
Eucgr.H04085 Eucalyptus grandis HOM05D005991 ORTHO05D007408 1.3e-80 303.9 256 67.6
Lj9A696T49 Lonicera japonica HOM05D005991 ORTHO05D007408 1.3e-80 303.9 257 69.3
Lalb_Chr13g0298761 Lupinus albus HOM05D005991 ORTHO05D007408 1.8e-79 300.1 261 67.4
MSTRG.22639 Avicennia marina HOM05D005991 ORTHO05D007408 1.5e-78 297.0 256 68.4
TAR362G0621 Trochodendron aralioides HOM05D005991 ORTHO05D007408 1.5e-78 297.0 270 65.9
Nitab4.5_0003374g0080 Nicotiana tabacum HOM05D005991 ORTHO05D007408 1.7e-77 293.5 260 65.8
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 2.2e-77 293.1 265 64.9
Migut.I00898 Erythranthe guttata HOM05D005991 ORTHO05D007408 4.2e-76 288.9 271 62.4
DCAR_019078 Daucus carota HOM05D005991 ORTHO05D007408 3.6e-75 285.8 254 66.5
PGR004G0142 Punica granatum HOM05D005991 ORTHO05D007408 7.9e-75 284.6 252 65.5
Nitab4.5_0013885g0020 Nicotiana tabacum HOM05D005991 ORTHO05D007408 1.0e-74 284.3 266 62.0
PGSC0003DMG400030844 Solanum tuberosum HOM05D005991 ORTHO05D007408 2.3e-74 283.1 260 62.7
Psat0s2692g0080 Pisum sativum HOM05D005991 ORTHO05D007408 3.9e-74 282.3 257 63.8
RcHm_v2.0_Chr4g0426321 Rosa chinensis HOM05D005991 ORTHO05D007408 1.5e-73 280.4 279 63.4
Sopen04g029760 Solanum pennellii HOM05D005991 ORTHO05D007408 3.3e-73 279.3 260 62.7
Nn3g21864 Nelumbo nucifera HOM05D005991 ORTHO05D007408 9.7e-73 277.7 273 60.1
MD13G1147500 Malus domestica HOM05D005991 ORTHO05D007408 1.7e-72 276.9 286 60.1
QL06p013384 Quercus lobata HOM05D005991 ORTHO05D007408 1.7e-72 276.9 273 63.0
EL10Ac2g02410 Beta vulgaris HOM05D005991 ORTHO05D007408 4.8e-72 275.4 256 62.5
FvH4_4g20890 Fragaria vesca HOM05D005991 ORTHO05D007408 6.3e-72 275.0 282 62.4
FAN17G2933 Fragaria x ananassa HOM05D005991 ORTHO05D007408 1.1e-71 274.2 282 62.4
CAN.G1173.8 Capsicum annuum HOM05D005991 ORTHO05D007408 2.4e-71 273.1 260 61.9
Aqoxy7G00454 Aquilegia oxysepala HOM05D005991 ORTHO05D007408 6.9e-71 271.6 265 63.0
MELO3C021248.2 Cucumis melo HOM05D005991 ORTHO05D007408 9.1e-71 271.2 254 62.6
CsaV3_6G000060 Cucumis sativus L. HOM05D005991 ORTHO05D007408 9.1e-71 271.2 273 60.1
Glyma.07G232800 Glycine max HOM05D005991 ORTHO05D007408 1.2e-70 270.8 254 65.0
Peaxi162Scf00139g00312 Petunia axillaris HOM05D005991 ORTHO05D007408 3.4e-70 269.2 259 61.8
Sc23g0006090 Simmondsia chinensis HOM05D005991 ORTHO05D007408 4.5e-70 268.9 253 63.2
Solyc04g074800.3 Solanum lycopersicum HOM05D005991 ORTHO05D007408 1.3e-69 267.3 263 60.5
FAN12G0391 Fragaria x ananassa HOM05D005991 ORTHO05D007408 2.2e-69 266.5 292 60.3
TWI73G0156 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 2.9e-69 266.2 252 64.3
FAN07G2713 Fragaria x ananassa HOM05D005991 ORTHO05D007408 3.8e-69 265.8 292 60.3
ClCG06G004330 Citrullus lanatus HOM05D005991 ORTHO05D007408 6.5e-69 265.0 273 59.0
Cc10_g13510 Coffea canephora HOM05D005991 ORTHO05D007408 1.1e-68 264.2 260 60.8
Medtr4g123060 Medicago truncatula HOM05D005991 ORTHO05D007408 1.1e-68 264.2 233 64.8
Manes.03G209000 Manihot esculenta HOM05D005991 ORTHO05D007408 1.4e-68 263.8 303 55.8
unitig_32.g11589 Utricularia gibba HOM05D005991 ORTHO05D007408 1.4e-68 263.8 243 62.1
Ca_21401_v3 Cicer arietinum L. HOM05D005991 ORTHO05D007408 2.5e-68 263.1 256 59.4
Lj4g0017646 Lotus japonicus HOM05D005991 ORTHO05D007408 4.2e-68 262.3 264 60.2
Sed0009947 Sechium edule HOM05D005991 ORTHO05D007408 7.2e-68 261.5 254 60.6
Lsat_1_v5_gn_4_27741 Lactuca sativa HOM05D005991 ORTHO05D007408 9.4e-68 261.2 272 59.9
TWI53G1476 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 1.2e-67 260.8 237 65.4
Phvul.003G118700 Phaseolus vulgaris HOM05D005991 ORTHO05D007408 2.7e-67 259.6 254 63.0
TWI09G0093 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 2.7e-67 259.6 237 64.6
Prupe.1G111000 Prunus persica HOM05D005991 ORTHO05D007408 7.9e-67 258.1 274 59.5
VMungo1215G0582 Vigna mungo HOM05D005991 ORTHO05D007408 7.9e-67 258.1 253 62.1
TPR.G12610 Trifolium pratense HOM05D005991 ORTHO05D007408 3.0e-66 256.1 271 57.6
Potri.010G151300 Populus trichocarpa HOM05D005991 ORTHO05D007408 6.7e-66 255.0 257 59.5
Cc00_g31090 Coffea canephora HOM05D005991 ORTHO05D007408 1.1e-65 254.2 261 59.4
HanXRQChr16g0526201 Helianthus annuus HOM05D005991 ORTHO05D007408 9.7e-65 251.1 243 61.7
arahy.Tifrunner.gnm1.ann1.ELD4MI Arachis hypogaea HOM05D005991 ORTHO05D007408 1.7e-64 250.4 256 60.2
Os01g0328500 Oryza sativa ssp. japonica HOM05D005991 ORTHO05D007408 1.4e-63 247.3 273 56.4
Zm00001eb131050 Zea mays HOM05D005991 ORTHO05D007408 4.1e-63 245.7 248 60.9
arahy.Tifrunner.gnm1.ann1.5JMV2K Arachis hypogaea HOM05D005991 ORTHO05D007408 5.3e-63 245.4 253 60.1
ECA234G0222 Erigeron canadensis HOM05D005991 ORTHO05D007408 7.0e-63 245.0 266 58.6
Glyma.17G037800 Glycine max HOM05D005991 ORTHO05D007408 7.0e-63 245.0 272 59.6
CiPaw.01G133100 Carya illinoinensis HOM05D005991 ORTHO05D007408 7.7e-62 241.5 188 76.1
Atru.chr4.3094 Acer truncatum HOM05D005991 ORTHO05D007408 1.0e-61 241.1 355 48.5
CANSAT78G1707 Cannabis sativa HOM05D005991 ORTHO05D007408 1.0e-61 241.1 231 63.6
HPP92_017296 Vanilla planifolia HOM05D005991 ORTHO05D007408 2.9e-61 239.6 242 60.3
Gohir.A02G056400 Gossypium hirsutum HOM05D005991 ORTHO05D007408 5.0e-61 238.8 295 51.9
Gorai.005G069300 Gossypium raimondii HOM05D005991 ORTHO05D007408 5.0e-61 238.8 295 51.9
Ah.11g042100 Amaranthus hybridus HOM05D005991 ORTHO05D007408 1.9e-60 236.9 238 59.7
Gohir.D02G061600 Gossypium hirsutum HOM05D005991 ORTHO05D007408 1.9e-60 236.9 295 51.5
Cpa.g.sc146.66 Carica papaya HOM05D005991 ORTHO05D007408 3.2e-60 236.1 277 56.0
Thecc.04G307900 Theobroma cacao HOM05D005991 ORTHO05D007408 3.2e-60 236.1 334 47.6
Ciclev10005452m.g Citrus clementina HOM05D005991 ORTHO05D007408 2.1e-59 233.4 327 51.1
THA.LOC104827106 Tarenaya hassleriana HOM05D005991 ORTHO05D007408 2.1e-59 233.4 228 60.5
Zm00001eb340570 Zea mays HOM05D005991 ORTHO05D007408 6.1e-59 231.9 221 65.6
MD16G1145900 Malus domestica HOM05D005991 ORTHO05D007408 8.0e-59 231.5 229 62.4
PSO017G0870 Papaver somniferum HOM05D005991 ORTHO05D007408 4.0e-58 229.2 277 54.2
PSO675G8194 Papaver somniferum HOM05D005991 ORTHO05D007408 6.7e-58 228.4 277 54.2
Duzib151G0057 Durio zibethinus HOM05D005991 ORTHO05D007408 8.8e-58 228.0 343 44.6
ATR0693G149 Amborella trichopoda HOM05D005991 ORTHO05D007408 1.2e-57 227.6 273 53.1
arahy.Tifrunner.gnm1.ann1.KWD76U Arachis hypogaea HOM05D005991 ORTHO05D007408 7.5e-57 224.9 253 55.7
Aa31LG11G8380 Aethionema arabicum HOM05D005991 ORTHO05D007408 1.6e-54 217.2 247 54.3
A09p05050 Brassica napus HOM05D005991 ORTHO05D007408 2.0e-54 216.9 245 53.1
BraA09t36144Z Brassica rapa HOM05D005991 ORTHO05D007408 2.0e-54 216.9 245 53.1
BcaB04g19640 Brassica carinata HOM05D005991 ORTHO05D007408 5.9e-54 215.3 245 53.1
Sp6g09550 Schrenkiella parvula HOM05D005991 ORTHO05D007408 5.0e-53 212.2 247 51.8
Sp2g19950 Schrenkiella parvula HOM05D005991 ORTHO05D007408 6.5e-53 211.8 245 52.2
C09p05460 Brassica napus HOM05D005991 ORTHO05D007408 1.1e-52 211.1 244 52.9
BcaC04g23714 Brassica carinata HOM05D005991 ORTHO05D007408 3.2e-52 209.5 244 53.7
Carub.0020s0004 Capsella rubella HOM05D005991 ORTHO05D007408 4.2e-52 209.1 246 50.8
COL.COLO4_34551 Corchorus olitorius HOM05D005991 ORTHO05D007408 7.2e-52 208.4 159 75.5
AL6G41020 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 1.2e-51 207.6 248 50.8
AT5G30490 Arabidopsis thaliana HOM05D005991 ORTHO05D007408 1.6e-51 207.2 230 53.9
CARHR185530 Cardamine hirsuta HOM05D005991 ORTHO05D007408 3.6e-51 206.1 232 53.4
CSS0020858 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 8.0e-51 204.9 137 84.7
BcaNung02118 Brassica carinata HOM05D005991 ORTHO05D007408 1.8e-50 203.8 242 53.7
C07p40040 Brassica napus HOM05D005991 ORTHO05D007408 1.8e-50 203.8 242 53.7
BolC7t44538H Brassica oleracea HOM05D005991 ORTHO05D007408 1.8e-50 203.8 242 53.7
BraA06t26732Z Brassica rapa HOM05D005991 ORTHO05D007408 7.5e-49 198.4 242 53.3
BolC9t53475H Brassica oleracea HOM05D005991 ORTHO05D007408 9.8e-49 198.0 264 48.5
A06p38170 Brassica napus HOM05D005991 ORTHO05D007408 2.8e-48 196.4 242 52.9
AUR62020284 Chenopodium quinoa HOM05D005991 ORTHO05D007408 2.8e-48 196.4 255 49.0
AUR62037721 Chenopodium quinoa HOM05D005991 ORTHO05D007408 1.6e-46 190.7 258 47.7
Thhalv10004825m.g Eutrema salsugineum HOM05D005991 ORTHO05D007408 1.3e-45 187.6 232 50.0
SEGI_07358 Sequoiadendron giganteum HOM05D005991 ORTHO05D007408 5.2e-42 175.6 282 45.7
PGR119G0116 Punica granatum HOM05D005991 ORTHO05D007408 8.8e-42 174.9 124 75.8
BcaC06g30693 Brassica carinata HOM05D005991 ORTHO05D007408 4.4e-41 172.6 249 46.6
Mapoly0030s0047 Marchantia polymorpha HOM05D005991 ORTHO05D007408 3.3e-36 156.4 268 40.7
CDE05G0304 Ceratophyllum demersum HOM05D005991 ORTHO05D007408 5.2e-34 149.1 170 56.5
Actinidia31584 Actinidia chinensis HOM05D005991 ORTHO05D007408 1.7e-32 144.1 237 48.9
arahy.Tifrunner.gnm1.ann1.FWR109 Arachis hypogaea HOM05D005991 ORTHO05D007408 1.7e-29 134.0 158 53.8
Pp3c5_15500 Physcomitrium patens HOM05D005991 ORTHO05D007408 3.3e-28 129.8 258 37.2
Cre14.g632600 Chlamydomonas reinhardtii HOM05D005991 ORTHO05D007408 1.8e-26 124.0 280 34.3
SMO203G0019 Selaginella moellendorffii HOM05D005991 ORTHO05D007408 2.9e-24 116.7 232 37.9
AagrBONN_evm.TU.Sc2ySwM_117.1275 Anthoceros agrestis HOM05D005991 ORTHO05D007408 3.5e-22 109.8 144 49.3
CBR_g56129 Chara braunii HOM05D005991 ORTHO05D007408 3.0e-21 106.7 301 34.2
MCO08G234 Micromonas commoda HOM05D005991 ORTHO05D007408 1.7e-13 80.9 153 39.9
GSVIVG01017610001 Vitis vinifera HOM05D005991 ORTHO05D007408 1.1e-12 78.2 138 45.7
GSVIVG01017622001 Vitis vinifera HOM05D005991 ORTHO05D007408 3.1e-10 70.1 68 55.9
Sabra10G0116500 Salix brachista HOM05D005991 ORTHO05D007408 3.4e-09 66.6 111 42.3
PRCOL_00003370 Prasinoderma coloniale HOM05D005991 ORTHO05D007408 1.1e-07 61.6 223 30.0
AL1G65220 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 4.6e-06 56.2 117 37.6


User provided reference genes

Program Settings