Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003202 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 5.6e-65 250.8 123 100.0
CSS0037049 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 5.6e-65 250.8 123 100.0
MD00G1139400 Malus domestica HOM05D005515 ORTHO05D006620 2.2e-21 105.9 70 78.6
CiPaw.04G036400 Carya illinoinensis HOM05D005515 ORTHO05D006620 2.5e-20 102.4 51 94.1
AUR62017824 Chenopodium quinoa HOM05D005515 ORTHO05D006620 5.5e-20 101.3 62 77.4
EL10Ac6g15358 Beta vulgaris HOM05D005515 ORTHO05D006620 7.2e-20 100.9 51 90.2
Medtr7g033490 Medicago truncatula HOM05D005515 ORTHO05D006620 1.6e-19 99.8 51 86.3
TPR.G38294 Trifolium pratense HOM05D005515 ORTHO05D006620 3.6e-19 98.6 51 84.3
Actinidia30652 Actinidia chinensis HOM05D005515 ORTHO05D006620 7.9e-19 97.4 50 90.0
Psat3g175680 Pisum sativum HOM05D005515 ORTHO05D006620 7.9e-19 97.4 51 82.4
Duzib268G1731 Durio zibethinus HOM05D005515 ORTHO05D006620 1.8e-18 96.3 51 86.3
CSS0007323 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 3.0e-18 95.5 51 86.3
Zm00001eb364510 Zea mays HOM05D005515 ORTHO05D006620 5.1e-18 94.7 64 67.2
Gohir.A05G310700 Gossypium hirsutum HOM05D005515 ORTHO05D006620 8.8e-18 94.0 51 84.3
Gohir.D05G311500 Gossypium hirsutum HOM05D005515 ORTHO05D006620 8.8e-18 94.0 51 84.3
Gorai.009G332600 Gossypium raimondii HOM05D005515 ORTHO05D006620 8.8e-18 94.0 51 84.3
COL.COLO4_20393 Corchorus olitorius HOM05D005515 ORTHO05D006620 1.1e-17 93.6 49 87.8
Haze_14873 Corylus avellana HOM05D005515 ORTHO05D006620 5.7e-17 91.3 62 74.2
ClCG08G010060 Citrullus lanatus HOM05D005515 ORTHO05D006620 9.7e-17 90.5 99 54.5
Oeu006531.1 Olea europaea HOM05D005515 ORTHO05D006620 2.8e-16 89.0 51 80.4
Sed0013471 Sechium edule HOM05D005515 ORTHO05D006620 3.7e-16 88.6 50 84.0
SalBow2G3427 Salvia bowleyana HOM05D005515 ORTHO05D006620 8.2e-16 87.4 62 62.9
Pp3c8_2660 Physcomitrium patens HOM05D005515 ORTHO05D006620 1.1e-15 87.0 50 78.0
Zm00001eb143260 Zea mays HOM05D005515 ORTHO05D006620 1.1e-15 87.0 64 62.5
Actinidia05921 Actinidia chinensis HOM05D005515 ORTHO05D006620 1.4e-15 86.7 44 88.6
vmacro05955 Vaccinium macrocarpon HOM05D005515 ORTHO05D006620 1.4e-15 86.7 40 97.5
MD09G1011100 Malus domestica HOM05D005515 ORTHO05D006620 3.1e-15 85.5 51 82.4
Ah.02g120510 Amaranthus hybridus HOM05D005515 ORTHO05D006620 9.1e-15 84.0 48 75.0
QL02p071462 Quercus lobata HOM05D005515 ORTHO05D006620 9.1e-15 84.0 40 90.0
RcHm_v2.0_Chr2g0175521 Rosa chinensis HOM05D005515 ORTHO05D006620 9.1e-15 84.0 40 92.5
AagrBONN_evm.TU.Sc2ySwM_117.47 Anthoceros agrestis HOM05D005515 ORTHO05D006620 1.2e-14 83.6 51 72.5
Dinv25661 Davidia involucrata HOM05D005515 ORTHO05D006620 2.0e-14 82.8 51 80.4
FAN14G0031 Fragaria x ananassa HOM05D005515 ORTHO05D006620 2.0e-14 82.8 69 62.3
CSS0037273 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 2.2e-13 79.3 40 87.5
Migut.K00729 Erythranthe guttata HOM05D005515 ORTHO05D006620 6.5e-13 77.8 50 68.0
Sopen02g017220 Solanum pennellii HOM05D005515 ORTHO05D006620 1.1e-12 77.0 40 80.0
VMungo1383G1573 Vigna mungo HOM05D005515 ORTHO05D006620 1.1e-12 77.0 99 46.5
FvH4_6g53480 Fragaria vesca HOM05D005515 ORTHO05D006620 1.4e-12 76.6 62 64.5
Potri.001G330400 Populus trichocarpa HOM05D005515 ORTHO05D006620 3.2e-12 75.5 51 74.5
SalBow7G1491 Salvia bowleyana HOM05D005515 ORTHO05D006620 6.1e-11 71.2 73 53.4
Sabra17G0064300 Salix brachista HOM05D005515 ORTHO05D006620 1.4e-10 70.1 86 47.7
MELO3C011459.2 Cucumis melo HOM05D005515 ORTHO05D006620 3.0e-10 68.9 54 66.7
CANSAT11G1216 Cannabis sativa HOM05D005515 ORTHO05D006620 5.1e-10 68.2 62 56.5
Eucgr.I01648 Eucalyptus grandis HOM05D005515 ORTHO05D006620 1.1e-09 67.0 51 66.7
FAN02G1022 Fragaria x ananassa HOM05D005515 ORTHO05D006620 1.1e-09 67.0 69 52.2
FAN05G2195 Fragaria x ananassa HOM05D005515 ORTHO05D006620 2.6e-09 65.9 62 56.5
FAN09G0415 Fragaria x ananassa HOM05D005515 ORTHO05D006620 2.6e-09 65.9 62 56.5
Os01g0920200 Oryza sativa ssp. japonica HOM05D005515 ORTHO05D006620 3.3e-09 65.5 62 53.2
GSVIVG01033096001 Vitis vinifera HOM05D005515 ORTHO05D006620 3.3e-09 65.5 64 57.8
Rhsim10G0006500 Rhododendron simsii HOM05D005515 ORTHO05D006620 4.4e-09 65.1 62 54.8
Sc07g0003980 Simmondsia chinensis HOM05D005515 ORTHO05D006620 5.7e-09 64.7 51 64.7
Lj1g0017105 Lotus japonicus HOM05D005515 ORTHO05D006620 2.2e-08 62.8 51 62.7
Gohir.A05G338800 Gossypium hirsutum HOM05D005515 ORTHO05D006620 3.7e-08 62.0 51 62.7
Actinidia36201 Actinidia chinensis HOM05D005515 ORTHO05D006620 6.3e-08 61.2 51 60.8
Glyma.19G091000 Glycine max HOM05D005515 ORTHO05D006620 6.3e-08 61.2 51 60.8
Lalb_Chr22g0360381 Lupinus albus HOM05D005515 ORTHO05D006620 8.2e-08 60.8 51 58.8
PRCOL_00000741 Prasinoderma coloniale HOM05D005515 ORTHO05D006620 8.2e-08 60.8 49 53.1
CsaV3_6G032220 Cucumis sativus L. HOM05D005515 ORTHO05D006620 1.1e-07 60.5 50 62.0
Prupe.3G305900 Prunus persica HOM05D005515 ORTHO05D006620 1.1e-07 60.5 51 60.8
C09p03480 Brassica napus HOM05D005515 ORTHO05D006620 1.4e-07 60.1 39 64.1
Phvul.001G093800 Phaseolus vulgaris HOM05D005515 ORTHO05D006620 1.8e-07 59.7 51 60.8
HPP92_000347 Vanilla planifolia HOM05D005515 ORTHO05D006620 3.1e-07 58.9 62 48.4
Potri.017G069200 Populus trichocarpa HOM05D005515 ORTHO05D006620 4.1e-07 58.5 70 44.3
Aqoxy2G02223 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 5.3e-07 58.2 51 58.8
Aqoxy5G03385 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 5.3e-07 58.2 51 58.8
Aqoxy7G00951 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 5.3e-07 58.2 51 58.8
Glyma.16G056700 Glycine max HOM05D005515 ORTHO05D006620 7.0e-07 57.8 51 56.9
Cre08.g370300 Chlamydomonas reinhardtii HOM05D005515 ORTHO05D006620 1.2e-06 57.0 49 51.0
Hund04339 Selenicereus undatus HOM05D005515 ORTHO05D006620 1.2e-06 57.0 50 60.0
Ciclev10017250m.g Citrus clementina HOM05D005515 ORTHO05D006620 4.5e-06 55.1 51 52.9
Haze_27757 Corylus avellana HOM05D005515 ORTHO05D006620 4.5e-06 55.1 58 41.4
Migut.K01462 Erythranthe guttata HOM05D005515 ORTHO05D006620 7.7e-06 54.3 50 56.0
SHI03947 Sapria himalayana HOM05D005515 ORTHO05D006620 7.7e-06 54.3 37 67.6
TAR374G0204 Trochodendron aralioides HOM05D005515 ORTHO05D006620 7.7e-06 54.3 51 54.9


User provided reference genes

Program Settings