Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.9e-220 768.8 387 100.0
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.9e-184 647.9 390 87.2
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 8.5e-160 567.4 416 74.8
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.1e-146 522.3 417 70.5
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.9e-145 518.1 386 74.9
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.8e-139 499.2 378 73.8
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.3e-136 490.3 417 64.5
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 5.0e-136 488.4 417 67.9
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 2.8e-134 482.6 417 62.4
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.0e-133 478.8 417 67.1
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.5e-132 476.9 386 70.2
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 8.6e-128 461.1 417 60.9
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.6e-126 456.8 407 64.9
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.8e-125 453.4 417 59.0
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 4.4e-124 448.7 502 53.4
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 5.8e-124 448.4 415 59.5
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 1.7e-123 446.8 413 59.8
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 3.2e-122 442.6 416 58.4
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 3.2e-122 442.6 416 58.2
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 7.0e-122 441.4 417 57.1
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 2.0e-121 439.9 417 57.8
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 1.7e-120 436.8 417 56.8
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 3.9e-120 435.6 415 57.6
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 9.5e-119 431.0 417 57.1
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 3.1e-117 426.0 417 57.1
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 4.0e-117 425.6 417 57.1
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 4.0e-117 425.6 416 57.2
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 5.2e-117 425.2 389 59.9
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 1.2e-116 424.1 369 62.9
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 3.4e-116 422.5 415 55.4
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 7.5e-116 421.4 369 62.6
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 7.5e-116 421.4 417 57.8
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 7.5e-116 421.4 389 59.1
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 6.4e-115 418.3 415 56.9
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 4.1e-114 415.6 416 55.8
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 9.2e-114 414.5 416 54.8
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 2.1e-113 413.3 416 55.3
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 2.1e-113 413.3 416 55.5
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 2.1e-113 413.3 416 55.5
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 3.9e-112 409.1 425 52.7
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 3.3e-111 406.0 417 54.2
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 4.3e-111 405.6 390 56.2
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 9.5e-111 404.4 393 55.0
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 2.1e-110 403.3 392 57.1
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 4.7e-110 402.1 416 51.4
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 8.1e-110 401.4 416 51.7
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 1.4e-109 400.6 417 55.2
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 3.1e-109 399.4 417 53.2
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 7.5e-108 394.8 395 54.4
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 7.5e-108 394.8 415 54.0
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 2.9e-107 392.9 443 50.3
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 3.7e-107 392.5 416 51.2
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 4.9e-107 392.1 416 51.2
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 1.4e-106 390.6 417 52.0
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 4.1e-106 389.0 391 54.5
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 5.4e-106 388.7 415 53.0
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 7.1e-106 388.3 412 51.9
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 1.2e-105 387.5 417 52.5
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 2.7e-105 386.3 416 53.1
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 3.5e-105 386.0 371 59.6
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 4.6e-105 385.6 416 49.0
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 4.6e-105 385.6 417 52.0
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 4.6e-105 385.6 416 50.2
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 6.0e-105 385.2 416 52.6
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 7.8e-105 384.8 416 50.0
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 1.0e-104 384.4 414 51.4
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 1.3e-104 384.0 414 51.4
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 1.7e-104 383.6 396 52.5
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 5.1e-104 382.1 419 50.4
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 1.1e-103 380.9 416 50.2
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 1.1e-103 380.9 390 53.6
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 2.5e-103 379.8 392 53.3
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 2.5e-103 379.8 392 53.6
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 5.6e-103 378.6 413 51.6
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 7.3e-103 378.3 393 53.4
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 2.8e-102 376.3 417 51.1
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 2.8e-102 376.3 418 51.4
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 3.6e-102 375.9 417 52.5
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 1.4e-101 374.0 417 51.3
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 1.4e-101 374.0 392 51.5
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 1.8e-101 373.6 417 49.2
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 1.8e-101 373.6 420 51.4
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 2.4e-101 373.2 417 49.2
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 6.8e-101 371.7 388 53.9
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 1.5e-100 370.5 393 53.7
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 2.0e-100 370.2 390 52.1
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 9.9e-100 367.9 417 49.4
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 4.9e-99 365.5 394 50.5
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 4.9e-99 365.5 400 52.2
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 1.1e-98 364.4 393 50.4
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 1.1e-98 364.4 405 51.9
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 1.1e-98 364.4 416 50.2
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 4.2e-98 362.5 398 52.3
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 5.4e-98 362.1 391 51.4
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 1.0e-96 357.8 399 48.9
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 1.7e-96 357.1 399 48.9
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 3.0e-96 356.3 399 48.6
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 1.2e-92 344.4 417 49.2
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 1.3e-91 340.9 450 45.6
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 2.2e-91 340.1 450 45.6
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 5.4e-90 335.5 395 50.1
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 5.4e-90 335.5 397 49.6
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 3.5e-89 332.8 349 53.6
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 1.0e-88 331.3 336 51.5
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 1.7e-88 330.5 420 46.7
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 5.1e-88 328.9 401 49.4
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 1.5e-87 327.4 417 47.2
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 9.6e-87 324.7 417 46.8
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 9.6e-87 324.7 388 45.1
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 3.6e-86 322.8 384 47.9
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 2.2e-83 313.5 346 48.3
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 3.5e-81 306.2 417 45.1
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 1.3e-80 304.3 391 44.8
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.1e-79 301.2 399 43.1
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 2.4e-77 293.5 315 53.3
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 2.0e-76 290.4 417 43.9
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 7.9e-73 278.5 306 52.0
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 1.6e-57 227.6 217 57.6
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 9.7e-55 218.4 227 52.4
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 2.7e-49 200.3 240 49.6
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 5.7e-47 192.6 228 48.7
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.5e-44 184.5 219 47.9
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.2e-43 180.6 219 47.9
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 5.2e-40 169.5 366 31.4
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 4.4e-39 166.4 166 54.8
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 1.3e-38 164.9 211 46.4
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 1.3e-38 164.9 367 31.1
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 3.6e-33 146.7 168 50.6
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 8.0e-33 145.6 137 57.7
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.2e-31 141.7 202 39.6
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 2.2e-27 127.5 106 62.3
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 1.9e-26 124.4 245 31.0
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.2e-25 121.7 143 48.3
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 2.8e-22 110.5 107 54.2
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 1.7e-19 101.3 107 49.5
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 3.3e-18 97.1 340 24.7
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.2e-17 95.1 90 52.2
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 2.2e-14 84.3 84 47.6
SEGI_03319 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 1.8e-13 81.3 96 42.7
C07p19370 Brassica napus HOM05D004724 ORTHO05D005734 9.2e-13 79.0 85 45.9
CDE07G0543 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.6e-12 78.2 69 56.5
A07p12930 Brassica napus HOM05D004724 ORTHO05D005734 8.0e-09 65.9 68 48.5
BraA07t29066Z Brassica rapa HOM05D004724 ORTHO05D005734 8.0e-09 65.9 68 48.5
BolC7t42456H Brassica oleracea HOM05D004724 ORTHO05D005734 8.9e-08 62.4 68 47.1


User provided reference genes

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