Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003157 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 0.0e+00 2284.2 1153 100.0
CSS0014856 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 0.0e+00 2136.3 1222 90.9
Actinidia09963 Actinidia chinensis HOM05D003993 ORTHO05D005336 0.0e+00 1734.5 1221 74.8
Dinv22306 Davidia involucrata HOM05D003993 ORTHO05D005336 0.0e+00 1698.7 1222 72.3
vmacro11768 Vaccinium macrocarpon HOM05D003993 ORTHO05D005336 0.0e+00 1565.4 1215 68.8
Cfa020417 Carpinus fangiana HOM05D003993 ORTHO05D005336 0.0e+00 1561.2 1205 66.4
QL08p013350 Quercus lobata HOM05D003993 ORTHO05D005336 0.0e+00 1552.0 1218 66.3
CiPaw.11G183500 Carya illinoinensis HOM05D003993 ORTHO05D005336 0.0e+00 1551.6 1222 66.1
Potri.011G132800 Populus trichocarpa HOM05D003993 ORTHO05D005336 0.0e+00 1548.9 1218 66.0
TAR624G0674 Trochodendron aralioides HOM05D003993 ORTHO05D005336 0.0e+00 1547.7 1221 66.9
MD03G1211800 Malus domestica HOM05D003993 ORTHO05D005336 0.0e+00 1546.9 1221 65.8
Prupe.4G202100 Prunus persica HOM05D003993 ORTHO05D005336 0.0e+00 1546.6 1224 66.9
MD11G1227200 Malus domestica HOM05D003993 ORTHO05D005336 0.0e+00 1543.9 1221 65.5
Lj8C165T11 Lonicera japonica HOM05D003993 ORTHO05D005336 0.0e+00 1537.7 1250 65.4
Gohir.A01G074400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1534.6 1223 64.8
Potri.001G417200 Populus trichocarpa HOM05D003993 ORTHO05D005336 0.0e+00 1528.1 1218 65.4
CANSAT11G1844 Cannabis sativa HOM05D003993 ORTHO05D005336 0.0e+00 1527.3 1220 65.2
Thecc.07G054200 Theobroma cacao HOM05D003993 ORTHO05D005336 0.0e+00 1527.3 1220 66.0
Gohir.D01G060900 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1523.1 1223 64.5
Duzib170G0292 Durio zibethinus HOM05D003993 ORTHO05D005336 0.0e+00 1522.3 1275 63.3
Gorai.002G082300 Gossypium raimondii HOM05D003993 ORTHO05D005336 0.0e+00 1520.8 1224 64.5
TWI39G1096 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 0.0e+00 1520.0 1224 66.1
TWI38G0109 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 0.0e+00 1519.2 1224 66.3
Cc05_g13220 Coffea canephora HOM05D003993 ORTHO05D005336 0.0e+00 1516.1 1215 65.7
Manes.15G076600 Manihot esculenta HOM05D003993 ORTHO05D005336 0.0e+00 1508.8 1213 65.2
ClCG10G005790 Citrullus lanatus HOM05D003993 ORTHO05D005336 0.0e+00 1500.0 1217 64.6
Ciclev10007272m.g Citrus clementina HOM05D003993 ORTHO05D005336 0.0e+00 1499.2 1220 65.7
Migut.H01858 Erythranthe guttata HOM05D003993 ORTHO05D005336 0.0e+00 1498.0 1218 65.2
Sabra11G0119600 Salix brachista HOM05D003993 ORTHO05D005336 0.0e+00 1492.6 1181 65.4
CsaV3_3G005470 Cucumis sativus L. HOM05D003993 ORTHO05D005336 0.0e+00 1491.5 1217 63.9
Nn1g03663 Nelumbo nucifera HOM05D003993 ORTHO05D005336 0.0e+00 1491.1 1110 68.4
GSVIVG01014604001 Vitis vinifera HOM05D003993 ORTHO05D005336 0.0e+00 1491.1 1222 65.2
Sopen07g032220 Solanum pennellii HOM05D003993 ORTHO05D005336 0.0e+00 1489.9 1216 64.9
MELO3C025431.2 Cucumis melo HOM05D003993 ORTHO05D005336 0.0e+00 1489.6 1217 63.9
PSO675G0751 Papaver somniferum HOM05D003993 ORTHO05D005336 0.0e+00 1488.8 1226 64.5
Sed0012816 Sechium edule HOM05D003993 ORTHO05D005336 0.0e+00 1488.0 1218 64.0
Oeu032440.1 Olea europaea HOM05D003993 ORTHO05D005336 0.0e+00 1484.5 1230 64.3
Haze_09608 Corylus avellana HOM05D003993 ORTHO05D005336 0.0e+00 1476.8 1218 63.3
FvH4_3g21780 Fragaria vesca HOM05D003993 ORTHO05D005336 0.0e+00 1476.1 1218 63.7
HanXRQChr11g0332991 Helianthus annuus HOM05D003993 ORTHO05D005336 0.0e+00 1475.7 1193 64.9
PSO541G2178 Papaver somniferum HOM05D003993 ORTHO05D005336 0.0e+00 1473.0 1226 63.9
Lalb_Chr19g0134741 Lupinus albus HOM05D003993 ORTHO05D005336 0.0e+00 1472.6 1226 62.9
Lj3g0021702 Lotus japonicus HOM05D003993 ORTHO05D005336 0.0e+00 1469.1 1218 63.4
Nitab4.5_0000397g0110 Nicotiana tabacum HOM05D003993 ORTHO05D005336 0.0e+00 1469.1 1297 61.8
Atru.chr2.3206 Acer truncatum HOM05D003993 ORTHO05D005336 0.0e+00 1467.2 1218 64.1
TAR626G1606 Trochodendron aralioides HOM05D003993 ORTHO05D005336 0.0e+00 1467.2 1220 63.8
ECA236G0263 Erigeron canadensis HOM05D003993 ORTHO05D005336 0.0e+00 1466.8 1217 63.3
RcHm_v2.0_Chr5g0037331 Rosa chinensis HOM05D003993 ORTHO05D005336 0.0e+00 1466.8 1218 63.3
Glyma.12G214500 Glycine max HOM05D003993 ORTHO05D005336 0.0e+00 1463.7 1218 62.4
FAN25G1663 Fragaria x ananassa HOM05D003993 ORTHO05D005336 0.0e+00 1463.0 1227 63.2
Phvul.005G091400 Phaseolus vulgaris HOM05D003993 ORTHO05D005336 0.0e+00 1461.4 1222 62.6
arahy.Tifrunner.gnm1.ann1.C7DQ5B Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1457.6 1204 64.2
arahy.Tifrunner.gnm1.ann1.YETR49 Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1455.7 1224 63.5
FAN16G1112 Fragaria x ananassa HOM05D003993 ORTHO05D005336 0.0e+00 1454.1 1240 62.2
Glyma.13G287100 Glycine max HOM05D003993 ORTHO05D005336 0.0e+00 1453.7 1222 62.0
FAN11G2565 Fragaria x ananassa HOM05D003993 ORTHO05D005336 0.0e+00 1453.3 1231 62.7
Ca_01754_v3 Cicer arietinum L. HOM05D003993 ORTHO05D005336 0.0e+00 1449.5 1221 61.8
VMungo1080G1710 Vigna mungo HOM05D003993 ORTHO05D005336 0.0e+00 1448.7 1222 62.3
DCAR_010016 Daucus carota HOM05D003993 ORTHO05D005336 0.0e+00 1446.0 1218 63.8
Solyc07g064080.4 Solanum lycopersicum HOM05D003993 ORTHO05D005336 0.0e+00 1445.3 1216 63.6
Glyma.12G135700 Glycine max HOM05D003993 ORTHO05D005336 0.0e+00 1442.9 1218 61.7
Lsat_1_v5_gn_7_108360 Lactuca sativa HOM05D003993 ORTHO05D005336 0.0e+00 1441.8 1213 63.2
Eucgr.F03424 Eucalyptus grandis HOM05D003993 ORTHO05D005336 0.0e+00 1441.0 1217 61.8
Psat5g251760 Pisum sativum HOM05D003993 ORTHO05D005336 0.0e+00 1437.6 1218 62.0
Aqoxy4G02086 Aquilegia oxysepala HOM05D003993 ORTHO05D005336 0.0e+00 1437.2 1221 62.6
Nitab4.5_0009192g0040 Nicotiana tabacum HOM05D003993 ORTHO05D005336 0.0e+00 1428.3 1215 63.4
CAN.G337.149 Capsicum annuum HOM05D003993 ORTHO05D005336 0.0e+00 1419.8 1184 64.3
Lj3g0011163 Lotus japonicus HOM05D003993 ORTHO05D005336 0.0e+00 1418.7 1222 61.0
COL.COLO4_09564 Corchorus olitorius HOM05D003993 ORTHO05D005336 0.0e+00 1417.9 1218 62.6
Medtr2g082910 Medicago truncatula HOM05D003993 ORTHO05D005336 0.0e+00 1417.5 1218 61.0
Lalb_Chr14g0366101 Lupinus albus HOM05D003993 ORTHO05D005336 0.0e+00 1416.4 1224 61.0
Peaxi162Scf01086g00149 Petunia axillaris HOM05D003993 ORTHO05D005336 0.0e+00 1409.4 1215 62.6
CARHR096540 Cardamine hirsuta HOM05D003993 ORTHO05D005336 0.0e+00 1406.7 1224 61.1
Carub.0003s2068 Capsella rubella HOM05D003993 ORTHO05D005336 0.0e+00 1403.7 1223 61.2
arahy.Tifrunner.gnm1.ann1.M0TH05 Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1402.9 1216 60.5
AT3G20720 Arabidopsis thaliana HOM05D003993 ORTHO05D005336 0.0e+00 1402.5 1223 61.2
BcaB04g20636 Brassica carinata HOM05D003993 ORTHO05D005336 0.0e+00 1402.1 1219 61.4
AL3G34640 Arabidopsis lyrata HOM05D003993 ORTHO05D005336 0.0e+00 1401.3 1223 61.4
Cpa.g.sc97.71 Carica papaya HOM05D003993 ORTHO05D005336 0.0e+00 1395.6 1220 61.3
C01p43520 Brassica napus HOM05D003993 ORTHO05D005336 0.0e+00 1395.2 1224 60.7
Sp3g18740 Schrenkiella parvula HOM05D003993 ORTHO05D005336 0.0e+00 1394.4 1225 61.0
BolC1t04312H Brassica oleracea HOM05D003993 ORTHO05D005336 0.0e+00 1392.9 1224 60.6
BraA01t03515Z Brassica rapa HOM05D003993 ORTHO05D005336 0.0e+00 1391.7 1224 60.5
Psat7g122440 Pisum sativum HOM05D003993 ORTHO05D005336 0.0e+00 1391.7 1246 59.9
SalBow7G3755 Salvia bowleyana HOM05D003993 ORTHO05D005336 0.0e+00 1389.8 1267 59.9
A01p34110 Brassica napus HOM05D003993 ORTHO05D005336 0.0e+00 1388.2 1224 60.5
EL10Ac4g07982 Beta vulgaris HOM05D003993 ORTHO05D005336 0.0e+00 1387.9 1222 59.6
THA.LOC104817894 Tarenaya hassleriana HOM05D003993 ORTHO05D005336 0.0e+00 1386.7 1223 61.1
BcaC09g49013 Brassica carinata HOM05D003993 ORTHO05D005336 0.0e+00 1385.2 1224 60.5
PGR031G1242 Punica granatum HOM05D003993 ORTHO05D005336 0.0e+00 1380.2 1230 61.4
AUR62015640 Chenopodium quinoa HOM05D003993 ORTHO05D005336 0.0e+00 1377.1 1239 58.6
Gorai.009G427300 Gossypium raimondii HOM05D003993 ORTHO05D005336 0.0e+00 1376.3 1220 59.5
Gohir.D05G365000 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1374.4 1222 59.2
MBI18_g30688_MAGBIO Magnolia biondii HOM05D003993 ORTHO05D005336 0.0e+00 1333.5 1110 62.7
Aa31LG8G7470 Aethionema arabicum HOM05D003993 ORTHO05D005336 0.0e+00 1319.7 1300 56.5
HPP92_011131 Vanilla planifolia HOM05D003993 ORTHO05D005336 0.0e+00 1317.8 1225 57.8
Thhalv10019934m.g Eutrema salsugineum HOM05D003993 ORTHO05D005336 0.0e+00 1317.4 1178 59.8
Medtr4g081300 Medicago truncatula HOM05D003993 ORTHO05D005336 0.0e+00 1292.7 1129 59.6
SGA_v2.0_scaffold320G48573 Striga asiatica HOM05D003993 ORTHO05D005336 0.0e+00 1285.4 1294 55.8
Ah.06g183050 Amaranthus hybridus HOM05D003993 ORTHO05D005336 0.0e+00 1276.2 1223 56.4
ATR0073G006 Amborella trichopoda HOM05D003993 ORTHO05D005336 0.0e+00 1263.4 1159 58.3
Gohir.A04G022400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1258.0 1156 57.2
Sc16g0006470 Simmondsia chinensis HOM05D003993 ORTHO05D005336 0.0e+00 1251.5 1116 59.7
Os04g0628600 Oryza sativa ssp. japonica HOM05D003993 ORTHO05D005336 0.0e+00 1246.9 1222 55.5
arahy.Tifrunner.gnm1.ann1.D8T6NU Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1234.2 1063 62.1
Duzib213G0987 Durio zibethinus HOM05D003993 ORTHO05D005336 0.0e+00 1194.9 1220 55.1
TPR.G36724 Trifolium pratense HOM05D003993 ORTHO05D005336 0.0e+00 1193.7 1230 53.9
Phvul.011G140701 Phaseolus vulgaris HOM05D003993 ORTHO05D005336 0.0e+00 1168.7 893 64.8
SEGI_25073 Sequoiadendron giganteum HOM05D003993 ORTHO05D005336 0.0e+00 1156.7 1297 50.4
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 0.0e+00 1153.7 1167 53.4
arahy.Tifrunner.gnm1.ann1.P0I1SB Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1137.5 1028 59.9
Mapoly0007s0002 Marchantia polymorpha HOM05D003993 ORTHO05D005336 1.3e-277 960.3 1329 42.7
SMO143G0035 Selaginella moellendorffii HOM05D003993 ORTHO05D005336 3.9e-277 958.7 1122 46.9
FAN21G3569 Fragaria x ananassa HOM05D003993 ORTHO05D005336 1.8e-274 949.9 663 71.2
Pp3c10_1850 Physcomitrium patens HOM05D003993 ORTHO05D005336 7.4e-268 927.9 1367 41.0
AagrBONN_evm.TU.Sc2ySwM_344.1679 Anthoceros agrestis HOM05D003993 ORTHO05D005336 2.7e-262 909.4 1272 42.9
unitig_26.g9969 Utricularia gibba HOM05D003993 ORTHO05D005336 3.0e-253 879.4 1233 44.7
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 6.5e-248 861.7 1055 47.1
AUR62020558 Chenopodium quinoa HOM05D003993 ORTHO05D005336 3.9e-208 729.6 785 50.7
VMungo1127G1901 Vigna mungo HOM05D003993 ORTHO05D005336 2.7e-201 706.8 764 51.4
Zm00001eb431410 Zea mays HOM05D003993 ORTHO05D005336 6.0e-193 679.1 862 44.9
HanXRQChr08g0234101 Helianthus annuus HOM05D003993 ORTHO05D005336 1.1e-191 674.9 453 72.8
SHI31871 Sapria himalayana HOM05D003993 ORTHO05D005336 4.9e-187 659.4 895 44.7
CBR_g39891 Chara braunii HOM05D003993 ORTHO05D005336 6.2e-182 642.5 1065 38.8
Pp3c15_5100 Physcomitrium patens HOM05D003993 ORTHO05D005336 5.2e-181 639.4 1004 37.2
Nn1g06997 Nelumbo nucifera HOM05D003993 ORTHO05D005336 1.8e-173 614.4 1211 37.6
FAN21G2881 Fragaria x ananassa HOM05D003993 ORTHO05D005336 1.1e-157 562.0 605 54.0
A05p28100 Brassica napus HOM05D003993 ORTHO05D005336 1.1e-149 535.4 782 43.5
BraA05t21692Z Brassica rapa HOM05D003993 ORTHO05D005336 6.5e-147 526.2 788 42.4
Hund02134 Selenicereus undatus HOM05D003993 ORTHO05D005336 2.9e-131 474.2 545 49.5
Hund02131 Selenicereus undatus HOM05D003993 ORTHO05D005336 1.5e-124 451.8 581 47.3
QL04p049176 Quercus lobata HOM05D003993 ORTHO05D005336 7.8e-92 343.2 220 77.7
VMungo1127G0362 Vigna mungo HOM05D003993 ORTHO05D005336 8.9e-88 329.7 273 61.5
QL05p071299 Quercus lobata HOM05D003993 ORTHO05D005336 7.8e-84 316.6 182 83.5
BcaC05g28293 Brassica carinata HOM05D003993 ORTHO05D005336 9.2e-77 293.1 313 54.6
arahy.Tifrunner.gnm1.ann1.R5QT9H Arachis hypogaea HOM05D003993 ORTHO05D005336 7.8e-76 290.0 713 31.7
arahy.Tifrunner.gnm1.ann1.9VYU83 Arachis hypogaea HOM05D003993 ORTHO05D005336 1.3e-75 289.3 430 47.4
PGSC0003DMG401019261 Solanum tuberosum HOM05D003993 ORTHO05D005336 5.1e-75 287.3 304 55.9
QL11p046973 Quercus lobata HOM05D003993 ORTHO05D005336 8.1e-57 226.9 132 83.3
C05p43510 Brassica napus HOM05D003993 ORTHO05D005336 1.8e-56 225.7 297 46.5
BolC5t33074H Brassica oleracea HOM05D003993 ORTHO05D005336 1.1e-53 216.5 323 42.4
HanXRQChr17g0562031 Helianthus annuus HOM05D003993 ORTHO05D005336 1.2e-52 213.0 165 67.3
BcaB06g26142 Brassica carinata HOM05D003993 ORTHO05D005336 1.0e-51 209.9 292 42.1
SHI31872 Sapria himalayana HOM05D003993 ORTHO05D005336 5.1e-51 207.6 174 63.2
arahy.Tifrunner.gnm1.ann1.UE9C9H Arachis hypogaea HOM05D003993 ORTHO05D005336 7.9e-44 183.7 169 57.4
Rhsim07G0149200 Rhododendron simsii HOM05D003993 ORTHO05D005336 5.3e-40 171.0 108 77.8
CDE05G2526 Ceratophyllum demersum HOM05D003993 ORTHO05D005336 6.9e-40 170.6 97 91.8
SHI50190 Sapria himalayana HOM05D003993 ORTHO05D005336 2.2e-38 165.6 132 65.2
arahy.Tifrunner.gnm1.ann1.H4PP15 Arachis hypogaea HOM05D003993 ORTHO05D005336 5.0e-30 137.9 197 44.7
Lsat_1_v5_gn_4_127040 Lactuca sativa HOM05D003993 ORTHO05D002051 1.4e-29 136.3 152 46.7
BcaB06g26141 Brassica carinata HOM05D003993 ORTHO05D005336 1.8e-27 129.4 138 50.7
Gorai.006G047200 Gossypium raimondii HOM05D003993 ORTHO05D005336 6.7e-27 127.5 166 45.8
MBI18_g40553_MAGBIO Magnolia biondii HOM05D003993 ORTHO05D005336 3.7e-25 121.7 66 90.9
VMungo1127G0084 Vigna mungo HOM05D003993 ORTHO05D005336 5.3e-24 117.9 68 82.4
Zm00001eb157050 Zea mays HOM05D003993 ORTHO05D011419 2.0e-18 99.4 138 46.4
arahy.Tifrunner.gnm1.ann1.8I3UM6 Arachis hypogaea HOM05D003993 ORTHO05D005336 1.3e-17 96.7 72 62.5
Os06g0731950 Oryza sativa ssp. japonica HOM05D003993 ORTHO05D005336 5.3e-16 91.3 77 50.6
Rhsim07G0135200 Rhododendron simsii HOM05D000810 ORTHO05D001064 1.5e-15 89.7 65 69.2
arahy.Tifrunner.gnm1.ann1.5R4HUS Arachis hypogaea HOM05D003993 ORTHO05D014907 3.8e-14 85.1 67 68.7
arahy.Tifrunner.gnm1.ann1.GX0MR1 Arachis hypogaea HOM05D003993 ORTHO05D014907 1.9e-13 82.8 53 79.2
arahy.Tifrunner.gnm1.ann1.SWME7Z Arachis hypogaea HOM05D003993 ORTHO05D014907 3.2e-13 82.0 53 77.4
arahy.Tifrunner.gnm1.ann1.43HIPW Arachis hypogaea HOM05D003993 ORTHO05D005336 4.2e-13 81.6 53 71.7
Zm00001eb128700 Zea mays HOM05D003993 ORTHO05D014907 5.5e-13 81.3 86 52.3
TPR.G25926 Trifolium pratense HOM05D001139 ORTHO05D000936 1.2e-12 80.1 66 60.6
BcaC05g28290 Brassica carinata HOM05D003993 ORTHO05D005336 6.1e-12 77.8 90 43.3
Lsat_1_v5_gn_4_137320 Lactuca sativa HOM05D000154 ORTHO05D000092 6.1e-12 77.8 53 67.9
Gorai.001G142700 Gossypium raimondii HOM05D003993 ORTHO05D014907 5.7e-10 71.2 157 36.3
Gohir.D01G097266 Gossypium hirsutum HOM05D003993 ORTHO05D014907 1.7e-09 69.7 42 81.0
Gohir.A05G172101 Gossypium hirsutum HOM05D003993 ORTHO05D014907 4.8e-09 68.2 157 35.7
Gohir.A05G278766 Gossypium hirsutum HOM05D003993 ORTHO05D014907 4.8e-09 68.2 157 35.7
C05p43480 Brassica napus HOM05D000001 ORTHO05D000003 8.2e-09 67.4 55 52.7
Gorai.002G111900 Gossypium raimondii HOM05D003993 ORTHO05D014907 1.1e-08 67.0 157 35.0
Gohir.A10G041333 Gossypium hirsutum HOM05D003993 ORTHO05D014907 1.4e-08 66.6 42 78.6
arahy.Tifrunner.gnm1.ann1.BQ4HID Arachis hypogaea HOM05D003993 ORTHO05D005336 5.3e-08 64.7 81 45.7
PGSC0003DMG402019261 Solanum tuberosum HOM05D003993 ORTHO05D005336 9.1e-08 63.9 78 53.8
BolC5t33071H Brassica oleracea HOM05D000001 ORTHO05D000003 1.7e-06 59.7 127 29.9
CBR_g34596 Chara braunii HOM05D000907 ORTHO05D021274 6.5e-06 57.8 64 46.9


User provided reference genes

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