Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003149 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 6.8e-44 180.3 90 100.0
CSS0007667 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 2.2e-42 175.3 87 98.9
Actinidia12613 Actinidia chinensis HOM05D005685 ORTHO05D007046 6.8e-36 153.7 88 84.1
RhsimUnG0060100 Rhododendron simsii HOM05D005685 ORTHO05D007046 8.3e-34 146.7 88 81.8
vmacro11986 Vaccinium macrocarpon HOM05D005685 ORTHO05D007046 1.4e-33 146.0 85 84.7
RhsimUnG0062900 Rhododendron simsii HOM05D005685 ORTHO05D007046 3.2e-33 144.8 88 81.8
RhsimUnG0165000 Rhododendron simsii HOM05D005685 ORTHO05D007046 7.0e-33 143.7 88 80.7
RhsimUnG0224400 Rhododendron simsii HOM05D005685 ORTHO05D007046 1.2e-32 142.9 89 79.8
Dinv13349 Davidia involucrata HOM05D005685 ORTHO05D007046 6.2e-29 130.6 87 73.6
Hma1.2p1_0713F.1_g207810 Hydrangea macrophylla HOM05D005685 ORTHO05D007046 7.5e-27 123.6 86 73.3
TAR605G0002 Trochodendron aralioides HOM05D005685 ORTHO05D007046 7.8e-24 113.6 87 60.9
Nn1g00647 Nelumbo nucifera HOM05D005685 ORTHO05D007046 5.1e-23 110.9 88 59.1
Cpa.g.sc77.65 Carica papaya HOM05D005685 ORTHO05D007046 9.5e-22 106.7 86 62.8
Thecc.07G137700 Theobroma cacao HOM05D005685 ORTHO05D007046 3.6e-21 104.8 87 60.9
Haze_08449 Corylus avellana HOM05D005685 ORTHO05D007046 3.1e-20 101.7 87 58.6
Potri.001G380900 Populus trichocarpa HOM05D005685 ORTHO05D007046 4.0e-20 101.3 86 61.6
Cfa019501 Carpinus fangiana HOM05D005685 ORTHO05D007046 5.2e-20 100.9 87 58.6
Potri.011G102100 Populus trichocarpa HOM05D005685 ORTHO05D007046 6.8e-20 100.5 86 60.5
CANSAT56G0504 Cannabis sativa HOM05D005685 ORTHO05D007046 8.9e-20 100.1 82 64.6
Sabra16G0251100 Salix brachista HOM05D005685 ORTHO05D007046 1.5e-19 99.4 86 59.3
GSVIVG01014072001 Vitis vinifera HOM05D005685 ORTHO05D007046 1.5e-19 99.4 86 60.5
FvH4_3g17370 Fragaria vesca HOM05D005685 ORTHO05D007046 2.0e-19 99.0 83 59.0
FAN16G1001 Fragaria x ananassa HOM05D005685 ORTHO05D007046 2.0e-19 99.0 83 59.0
Duzib213G0171 Durio zibethinus HOM05D005685 ORTHO05D007046 2.6e-19 98.6 87 56.3
Gohir.A11G290000 Gossypium hirsutum HOM05D005685 ORTHO05D007046 4.4e-19 97.8 86 57.0
Gorai.007G332400 Gossypium raimondii HOM05D005685 ORTHO05D007046 4.4e-19 97.8 86 57.0
FAN25G1369 Fragaria x ananassa HOM05D005685 ORTHO05D007046 9.9e-19 96.7 83 59.0
Gohir.D11G302400 Gossypium hirsutum HOM05D005685 ORTHO05D007046 1.3e-18 96.3 86 55.8
Manes.03G084500 Manihot esculenta HOM05D005685 ORTHO05D007046 1.3e-18 96.3 86 58.1
Cc05_g10550 Coffea canephora HOM05D005685 ORTHO05D007046 1.7e-18 95.9 84 54.8
Lalb_Chr19g0133681 Lupinus albus HOM05D005685 ORTHO05D007046 2.2e-18 95.5 88 52.3
FAN21G3337 Fragaria x ananassa HOM05D005685 ORTHO05D007046 3.8e-18 94.7 83 56.6
Lj1g0015970 Lotus japonicus HOM05D005685 ORTHO05D007046 4.9e-18 94.4 88 52.3
MD11G1273300 Malus domestica HOM05D005685 ORTHO05D007046 6.4e-18 94.0 83 55.4
Sabra11G0083400 Salix brachista HOM05D005685 ORTHO05D007046 6.4e-18 94.0 81 60.5
Peaxi162Scf00111g01236 Petunia axillaris HOM05D005685 ORTHO05D007046 1.1e-17 93.2 83 56.6
Prupe.4G154100 Prunus persica HOM05D005685 ORTHO05D007046 1.1e-17 93.2 86 53.5
PSO063G4015 Papaver somniferum HOM05D005685 ORTHO05D007046 1.4e-17 92.8 85 49.4
RcHm_v2.0_Chr5g0028891 Rosa chinensis HOM05D005685 ORTHO05D007046 1.4e-17 92.8 78 57.7
Atru.chr2.1911 Acer truncatum HOM05D005685 ORTHO05D007046 2.4e-17 92.0 80 53.8
Aqoxy4G01266 Aquilegia oxysepala HOM05D005685 ORTHO05D007046 2.4e-17 92.0 85 54.1
Ca_12745_v3 Cicer arietinum L. HOM05D005685 ORTHO05D007046 2.4e-17 92.0 88 53.4
PGSC0003DMG400007083 Solanum tuberosum HOM05D005685 ORTHO05D007046 2.4e-17 92.0 83 54.2
Solyc07g062050.3 Solanum lycopersicum HOM05D005685 ORTHO05D007046 3.2e-17 91.7 83 54.2
Glyma.15G211900 Glycine max HOM05D005685 ORTHO05D007046 4.2e-17 91.3 89 52.8
Sopen07g030310 Solanum pennellii HOM05D005685 ORTHO05D007046 9.2e-17 90.1 83 53.0
AT1G17040 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 1.2e-16 89.7 88 55.7
MSTRG.14992 Avicennia marina HOM05D005685 ORTHO05D007046 1.2e-16 89.7 86 54.7
CiPaw.11G154400 Carya illinoinensis HOM05D005685 ORTHO05D007046 2.1e-16 89.0 88 53.4
PSO782G3742 Papaver somniferum HOM05D005685 ORTHO05D007046 2.1e-16 89.0 85 48.2
Nitab4.5_0003618g0060 Nicotiana tabacum HOM05D005685 ORTHO05D007046 2.7e-16 88.6 83 53.0
HanXRQChr10g0305611 Helianthus annuus HOM05D005685 ORTHO05D007046 3.5e-16 88.2 86 51.2
Phvul.011G173500 Phaseolus vulgaris HOM05D005685 ORTHO05D007046 3.5e-16 88.2 84 53.6
Ah.03g134490 Amaranthus hybridus HOM05D005685 ORTHO05D007046 7.8e-16 87.0 87 49.4
arahy.Tifrunner.gnm1.ann1.TIF1LK Arachis hypogaea HOM05D005685 ORTHO05D007046 7.8e-16 87.0 84 52.4
CsaV3_4G032730 Cucumis sativus L. HOM05D005685 ORTHO05D007046 7.8e-16 87.0 83 53.0
Migut.M00685 Erythranthe guttata HOM05D005685 ORTHO05D007046 7.8e-16 87.0 89 52.8
THA.LOC104808083 Tarenaya hassleriana HOM05D005685 ORTHO05D007046 1.0e-15 86.7 89 51.7
TWI38G0887 Tripterygium wilfordii HOM05D005685 ORTHO05D007046 1.0e-15 86.7 56 69.6
Nitab4.5_0001140g0120 Nicotiana tabacum HOM05D005685 ORTHO05D007046 1.7e-15 85.9 75 56.0
Sed0016294 Sechium edule HOM05D005685 ORTHO05D007046 2.3e-15 85.5 86 48.8
ClCG11G017070 Citrullus lanatus HOM05D005685 ORTHO05D007046 3.9e-15 84.7 82 51.2
SalBow8G2073 Salvia bowleyana HOM05D005685 ORTHO05D007046 3.9e-15 84.7 88 47.7
SGA_v2.0_scaffold73G24373 Striga asiatica HOM05D005685 ORTHO05D007046 3.9e-15 84.7 84 53.6
arahy.Tifrunner.gnm1.ann1.4M0U4E Arachis hypogaea HOM05D005685 ORTHO05D007046 5.1e-15 84.3 82 51.2
EL10Ac4g08448 Beta vulgaris HOM05D005685 ORTHO05D007046 5.1e-15 84.3 87 46.0
VMungo1127G1789 Vigna mungo HOM05D005685 ORTHO05D007046 5.1e-15 84.3 88 50.0
MELO3C016678.2 Cucumis melo HOM05D005685 ORTHO05D007046 8.7e-15 83.6 83 51.8
Sc03g0010780 Simmondsia chinensis HOM05D005685 ORTHO05D007046 8.7e-15 83.6 87 46.0
TPR.G16474 Trifolium pratense HOM05D005685 ORTHO05D007046 8.7e-15 83.6 89 50.6
Carub.0001s1676 Capsella rubella HOM05D005685 ORTHO05D007046 1.1e-14 83.2 89 49.4
AUR62019678 Chenopodium quinoa HOM05D005685 ORTHO05D007046 1.1e-14 83.2 87 48.3
DCAR_017584 Daucus carota HOM05D005685 ORTHO05D007046 1.1e-14 83.2 87 49.4
Aa31LG7G1870 Aethionema arabicum HOM05D005685 ORTHO05D007046 1.5e-14 82.8 86 53.5
Sp1g15160 Schrenkiella parvula HOM05D005685 ORTHO05D007046 2.5e-14 82.0 89 49.4
DCAR_013783 Daucus carota HOM05D005685 ORTHO05D007046 3.3e-14 81.6 77 51.9
Ciclev10019120m.g Citrus clementina HOM05D005685 ORTHO05D007046 5.6e-14 80.9 81 55.6
CAN.G375.61 Capsicum annuum HOM05D005685 ORTHO05D007046 7.3e-14 80.5 83 50.6
AUR62013935 Chenopodium quinoa HOM05D005685 ORTHO05D007046 7.3e-14 80.5 87 46.0
PGR031G3876 Punica granatum HOM05D005685 ORTHO05D007046 7.3e-14 80.5 82 53.7
Lj1C822G13 Lonicera japonica HOM05D005685 ORTHO05D007046 1.6e-13 79.3 76 57.9
Psat4g139160 Pisum sativum HOM05D005685 ORTHO05D007046 1.6e-13 79.3 89 46.1
FAN11G3672 Fragaria x ananassa HOM05D005685 ORTHO05D007046 2.1e-13 79.0 73 54.8
COL.COLO4_17454 Corchorus olitorius HOM05D005685 ORTHO05D007046 3.6e-13 78.2 77 54.5
Thhalv10018251m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 4.7e-13 77.8 79 50.6
AL1G29220 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 6.2e-13 77.4 90 48.9
AL7G51000 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 6.2e-13 77.4 90 48.9
Medtr8g461480 Medicago truncatula HOM05D005685 ORTHO05D007046 8.1e-13 77.0 89 46.1
Thhalv10006979m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 1.1e-12 76.6 88 43.2
BcaB02g06680 Brassica carinata HOM05D005685 ORTHO05D007046 1.4e-12 76.3 95 43.2
Sp5g33630 Schrenkiella parvula HOM05D005685 ORTHO05D007046 3.1e-12 75.1 79 49.4
BcaC05g25679 Brassica carinata HOM05D005685 ORTHO05D007046 4.0e-12 74.7 71 50.7
BolC5t30242H Brassica oleracea HOM05D005685 ORTHO05D007046 4.0e-12 74.7 71 50.7
CARHR017570 Cardamine hirsuta HOM05D005685 ORTHO05D007046 4.0e-12 74.7 102 44.1
C05p15360 Brassica napus HOM05D005685 ORTHO05D007046 2.0e-11 72.4 72 48.6
BraA06t24453Z Brassica rapa HOM05D005685 ORTHO05D007046 2.0e-11 72.4 71 49.3
BraA06t26874Z Brassica rapa HOM05D005685 ORTHO05D007046 2.0e-11 72.4 71 49.3
A06p12940 Brassica napus HOM05D005685 ORTHO05D007046 3.4e-11 71.6 64 50.0
Eucgr.F03221 Eucalyptus grandis HOM05D005685 ORTHO05D007046 3.4e-11 71.6 81 49.4
HPP92_014870 Vanilla planifolia HOM05D005685 ORTHO05D007046 5.8e-11 70.9 79 44.3
unitig_747.g21593 Utricularia gibba HOM05D005685 ORTHO05D007046 1.3e-10 69.7 85 47.1
Aa31LG4G2430 Aethionema arabicum HOM05D005685 ORTHO05D007046 2.2e-10 68.9 77 44.2
AT1G78540 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 2.2e-10 68.9 79 50.6
Lsat_1_v5_gn_5_126281 Lactuca sativa HOM05D005685 ORTHO05D007046 2.9e-10 68.6 85 43.5
Carub.0002s2539 Capsella rubella HOM05D005685 ORTHO05D007046 4.9e-10 67.8 79 46.8
CARHR072030 Cardamine hirsuta HOM05D005685 ORTHO05D007046 4.9e-10 67.8 78 46.2
ECA234G1223 Erigeron canadensis HOM05D005685 ORTHO05D007046 4.9e-10 67.8 99 41.4
AL2G38940 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 8.4e-10 67.0 79 46.8
CDE04G0489 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 1.7e-07 59.3 76 42.1
ATR0665G442 Amborella trichopoda HOM05D005685 ORTHO05D007046 1.9e-06 55.8 51 47.1
Os10g0567300 Oryza sativa ssp. japonica HOM05D005685 ORTHO05D007046 5.6e-06 54.3 88 33.0


User provided reference genes

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