Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 1.9e-241 839.0 498 100.0
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 8.0e-219 763.8 498 90.8
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 1.6e-158 563.5 501 72.3
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 7.6e-145 518.1 497 68.2
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 5.8e-137 491.9 496 67.1
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.4e-135 487.3 497 66.2
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 3.0e-133 479.6 501 67.1
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 1.1e-103 381.3 491 57.0
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 1.2e-102 377.9 504 50.0
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 1.3e-96 357.8 490 54.9
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 8.5e-96 355.1 489 55.2
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 5.7e-92 342.4 499 50.9
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 3.1e-90 336.7 337 57.3
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 2.7e-89 333.6 483 54.0
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 4.5e-89 332.8 507 57.2
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 1.0e-88 331.6 348 58.3
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 2.9e-88 330.1 359 50.7
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 1.1e-87 328.2 477 53.5
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 2.5e-87 327.0 468 52.8
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 2.5e-87 327.0 354 54.5
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 2.5e-87 327.0 488 50.8
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 4.2e-87 326.2 341 54.8
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.2e-86 324.7 348 54.0
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 1.2e-86 324.7 257 68.5
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 1.6e-86 324.3 349 54.2
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 8.0e-86 322.0 500 44.2
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 1.8e-85 320.9 505 56.6
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 3.0e-85 320.1 337 54.9
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 1.5e-84 317.8 351 53.0
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 4.4e-84 316.2 493 52.7
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 1.7e-83 314.3 350 53.1
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 3.7e-83 313.2 471 52.4
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.4e-82 311.2 499 48.9
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 5.4e-82 309.3 490 52.2
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.6e-81 307.8 499 49.7
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 1.3e-80 304.7 333 57.4
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 5.0e-80 302.8 499 50.1
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 1.5e-79 301.2 477 47.4
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.2e-78 298.1 499 50.1
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 1.2e-78 298.1 350 51.4
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 2.1e-78 297.4 346 52.6
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 3.6e-78 296.6 499 48.9
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 4.7e-78 296.2 498 49.8
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 1.7e-75 287.7 406 47.0
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.7e-75 287.7 385 48.6
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 6.4e-75 285.8 497 48.9
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 8.3e-75 285.4 487 47.6
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 1.8e-74 284.3 385 48.1
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 2.4e-74 283.9 487 47.4
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 3.2e-74 283.5 385 48.1
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 1.7e-72 277.7 367 47.7
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 3.9e-72 276.6 288 54.5
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 9.5e-71 271.9 353 50.4
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 2.0e-68 264.2 308 51.6
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 5.8e-68 262.7 344 49.1
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 5.8e-68 262.7 349 46.4
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 5.8e-68 262.7 349 46.7
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 2.0e-65 254.2 350 48.6
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 2.7e-65 253.8 336 48.2
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 7.8e-65 252.3 351 46.4
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 9.5e-63 245.4 340 46.5
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 3.6e-62 243.4 350 47.7
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 1.4e-61 241.5 347 47.8
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 4.0e-61 240.0 353 44.5
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 5.2e-61 239.6 350 45.4
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 6.8e-61 239.2 357 46.8
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 1.2e-60 238.4 332 48.5
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 3.4e-60 236.9 286 53.8
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 1.3e-59 235.0 496 42.9
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 2.9e-59 233.8 274 55.1
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 1.1e-58 231.9 337 48.1
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 4.1e-58 229.9 385 43.4
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 4.6e-57 226.5 346 44.8
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 6.0e-57 226.1 341 43.1
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 1.0e-56 225.3 485 43.1
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 3.3e-55 220.3 368 51.9
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 1.6e-54 218.0 349 44.4
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 2.8e-54 217.2 334 44.9
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 1.8e-53 214.5 350 42.9
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 1.5e-52 211.5 350 42.3
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 1.3e-51 208.4 350 40.9
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 1.7e-51 208.0 353 41.6
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 2.9e-51 207.2 331 43.8
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 3.8e-51 206.8 340 40.6
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 9.2e-50 202.2 346 41.6
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 2.7e-49 200.7 333 43.2
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 6.0e-49 199.5 354 40.7
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 3.0e-48 197.2 333 41.4
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 3.0e-48 197.2 372 36.8
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 5.1e-48 196.4 388 39.4
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 5.6e-47 193.0 333 41.1
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.6e-46 191.4 384 39.3
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 1.6e-46 191.4 346 39.6
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 2.0e-44 184.5 380 37.1
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 2.6e-44 184.1 344 37.8
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 5.8e-44 183.0 388 37.1
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 1.7e-43 181.4 364 38.7
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 1.4e-42 178.3 382 37.7
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 2.4e-42 177.6 390 37.4
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 2.4e-42 177.6 345 40.6
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 4.2e-42 176.8 383 37.9
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 7.1e-42 176.0 386 37.0
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 6.0e-41 172.9 415 36.1
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 1.9e-39 167.9 382 37.7
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 1.9e-39 167.9 299 42.5
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 7.3e-39 166.0 344 38.7
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 6.2e-38 162.9 386 35.0
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 9.0e-37 159.1 389 34.4
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 9.0e-37 159.1 389 34.4
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 9.9e-36 155.6 541 34.4
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 2.2e-35 154.5 387 35.4
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 2.2e-35 154.5 387 35.4
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 2.4e-34 151.0 363 35.8
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 1.2e-33 148.7 374 35.8
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 8.4e-27 125.9 397 32.0
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.8e-24 118.2 239 41.0
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 7.4e-23 112.8 86 74.4
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 1.7e-19 101.7 231 35.9
HPP92_018201 Vanilla planifolia HOM05D004836 ORTHO05D005150 3.3e-15 87.4 360 30.8
PSO675G3612 Papaver somniferum HOM05D004836 ORTHO05D005150 1.1e-13 82.4 357 28.0
BcaB08g35941 Brassica carinata HOM05D004836 ORTHO05D005150 1.4e-13 82.0 374 26.5
SEGI_04158 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 1.8e-13 81.6 252 32.5
TWI39G0060 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 6.9e-13 79.7 66 60.6
PSO541G5284 Papaver somniferum HOM05D004836 ORTHO05D005150 2.0e-12 78.2 357 27.5
vmacro11593 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 2.6e-12 77.8 180 58.9
SEGI_26437 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 5.9e-12 76.6 240 34.2
Zm00001eb316050 Zea mays HOM05D028105 ORTHO05D005150 1.3e-11 75.5 231 30.7
MBI13_g20252_MAGBIO Magnolia biondii HOM05D002159 ORTHO05D033708 3.8e-11 73.9 93 51.6
CDE02G2584 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 1.4e-10 72.0 60 71.7
Pp3c1_42830 Physcomitrium patens HOM05D014698 ORTHO05D016532 4.8e-06 57.0 59 55.9


User provided reference genes

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