Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.3e-67 258.8 138 100.0
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 6.7e-67 257.3 138 99.3
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.5e-66 256.1 138 99.3
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 1.6e-60 236.1 138 90.6
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 3.6e-60 235.0 138 89.9
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 3.6e-60 235.0 138 89.9
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 3.6e-60 235.0 140 90.0
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 1.0e-59 233.4 138 89.1
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 1.8e-59 232.6 139 90.6
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.3e-59 232.3 138 88.4
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.0e-59 231.9 139 89.9
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 5.1e-59 231.1 139 90.6
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 6.7e-59 230.7 138 88.4
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 8.8e-59 230.3 138 87.7
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 8.8e-59 230.3 138 87.7
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 8.8e-59 230.3 139 89.2
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 1.5e-58 229.6 140 88.6
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 2.0e-58 229.2 139 88.5
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 4.4e-58 228.0 138 87.0
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 5.7e-58 227.6 138 87.0
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 5.7e-58 227.6 139 87.8
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 7.4e-58 227.3 140 87.9
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 9.7e-58 226.9 139 87.8
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 9.7e-58 226.9 138 86.2
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 1.3e-57 226.5 138 86.2
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 1.3e-57 226.5 140 84.3
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.3e-57 226.5 138 86.2
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.7e-57 226.1 139 88.5
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 1.7e-57 226.1 139 84.9
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 2.2e-57 225.7 139 87.1
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 2.8e-57 225.3 139 87.1
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 3.7e-57 224.9 141 85.8
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 3.7e-57 224.9 141 86.5
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 6.3e-57 224.2 140 85.7
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 1.1e-56 223.4 138 87.0
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 1.4e-56 223.0 139 86.3
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 1.8e-56 222.6 139 86.3
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 2.4e-56 222.2 141 85.1
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 2.4e-56 222.2 139 85.6
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 5.3e-56 221.1 137 83.9
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 7.0e-56 220.7 140 84.3
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 9.1e-56 220.3 138 85.5
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.2e-55 219.9 138 83.3
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 1.2e-55 219.9 138 84.1
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 1.5e-55 219.5 137 83.2
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 1.5e-55 219.5 140 83.6
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 1.5e-55 219.5 139 84.9
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 3.5e-55 218.4 140 84.3
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 3.5e-55 218.4 143 83.2
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 4.5e-55 218.0 138 83.3
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 5.9e-55 217.6 138 84.1
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 7.7e-55 217.2 140 82.9
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 7.7e-55 217.2 140 82.9
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 7.7e-55 217.2 141 82.3
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 7.7e-55 217.2 143 82.5
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 1.3e-54 216.5 138 81.9
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 1.7e-54 216.1 138 81.9
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 1.7e-54 216.1 138 82.6
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 1.7e-54 216.1 139 83.5
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 2.2e-54 215.7 140 81.4
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 2.2e-54 215.7 143 79.7
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 2.9e-54 215.3 139 84.2
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 2.9e-54 215.3 139 84.2
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 2.9e-54 215.3 137 81.8
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 3.8e-54 214.9 140 82.9
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 3.8e-54 214.9 138 81.9
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 5.0e-54 214.5 140 82.1
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 5.0e-54 214.5 138 81.2
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 5.0e-54 214.5 138 83.3
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 1.5e-53 213.0 142 81.0
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 1.9e-53 212.6 137 81.8
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 2.5e-53 212.2 137 81.8
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 3.2e-53 211.8 138 81.9
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 7.2e-53 210.7 137 81.0
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 9.4e-53 210.3 147 76.9
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 1.2e-52 209.9 138 80.4
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 1.6e-52 209.5 141 80.1
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 1.6e-52 209.5 137 81.0
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 4.7e-52 208.0 151 76.8
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 4.7e-52 208.0 151 76.8
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 4.7e-52 208.0 164 72.0
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 6.1e-52 207.6 148 78.4
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 1.8e-51 206.1 149 75.8
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 5.2e-51 204.5 141 78.0
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 1.1e-50 203.4 152 74.3
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 1.5e-50 203.0 138 76.8
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 4.4e-50 201.4 138 77.5
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 5.7e-50 201.1 140 77.9
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 1.3e-49 199.9 139 79.1
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.8e-49 198.7 144 75.0
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 3.7e-49 198.4 160 68.8
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 4.8e-49 198.0 152 72.4
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 6.3e-49 197.6 140 76.4
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 1.1e-48 196.8 155 71.0
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 1.1e-48 196.8 155 71.0
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.4e-48 196.4 138 75.4
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.4e-48 196.4 144 73.6
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 1.4e-48 196.4 172 64.5
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 3.1e-48 195.3 141 76.6
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 4.1e-48 194.9 141 77.3
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 4.1e-48 194.9 112 93.8
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 7.0e-48 194.1 138 74.6
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 9.1e-48 193.7 146 73.3
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 2.0e-47 192.6 148 71.6
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 2.9e-46 188.7 134 75.4
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 9.4e-45 183.7 113 87.6
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 1.6e-44 183.0 176 60.2
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 6.1e-44 181.0 168 62.5
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 8.0e-44 180.6 134 73.9
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.4e-43 179.9 136 68.4
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 3.4e-42 175.3 114 80.7
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 7.5e-42 174.1 136 70.6
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.7e-41 172.9 115 81.7
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 1.4e-40 169.9 138 63.0
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 1.4e-40 169.9 113 82.3
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.6e-39 166.4 166 55.4
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 3.5e-39 165.2 119 77.3
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 1.7e-38 162.9 126 76.2
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 2.9e-38 162.2 139 65.5
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 3.2e-37 158.7 112 76.8
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 2.1e-36 156.0 134 65.7
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 1.8e-35 152.9 134 66.4
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 1.5e-34 149.8 136 60.3
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 2.6e-34 149.1 111 75.7
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 4.9e-33 144.8 97 81.4
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 6.3e-33 144.4 131 64.9
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 1.8e-32 142.9 168 54.2
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 7.0e-32 141.0 108 71.3
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.3e-30 136.7 118 64.4
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 2.9e-30 135.6 155 54.2
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 4.2e-29 131.7 135 56.3
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 5.5e-29 131.3 81 87.7
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 1.0e-27 127.1 114 64.9
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.4e-27 126.7 80 85.0
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.0e-27 125.6 80 83.8
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 4.0e-27 125.2 138 54.3
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 4.0e-27 125.2 80 83.8
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 2.0e-26 122.9 77 85.7
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.6e-26 122.5 76 88.2
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 4.4e-26 121.7 85 78.8
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 6.3e-25 117.9 85 76.5
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 1.1e-24 117.1 141 50.4
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 2.7e-23 112.5 69 81.2
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 5.9e-23 111.3 69 84.1
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 8.6e-22 107.5 69 79.7
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.6e-20 102.1 58 91.4
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 1.8e-19 99.8 100 60.0
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 1.4e-16 90.1 69 72.5
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 2.4e-16 89.4 57 84.2
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 3.2e-16 89.0 70 68.6
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 6.0e-15 84.7 77 61.0
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 7.3e-13 77.8 130 38.5
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 3.6e-12 75.5 72 62.5
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 3.6e-12 75.5 72 62.5
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 1.7e-09 66.6 58 60.3
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 3.2e-08 62.4 49 65.3
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 4.1e-08 62.0 51 62.7
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 7.1e-08 61.2 51 62.7
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 6.0e-07 58.2 97 44.3
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 6.0e-07 58.2 97 44.3
A07p00860 Brassica napus HOM05D004301 ORTHO05D005124 1.7e-06 56.6 37 73.0
BraA07t27884Z Brassica rapa HOM05D004301 ORTHO05D005124 1.7e-06 56.6 37 73.0
BcaB02g10679 Brassica carinata HOM05D004301 ORTHO05D005124 5.1e-06 55.1 44 65.9


User provided reference genes

Program Settings