Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003109 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D009684 7.8e-64 246.9 119 100.0
CSS0007644 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D009684 1.5e-38 162.9 83 94.0
Actinidia06447 Actinidia chinensis HOM05D000880 ORTHO05D009684 1.2e-32 143.3 96 71.9
Dinv15656 Davidia involucrata HOM05D000880 ORTHO05D009684 2.8e-29 132.1 95 70.5
vmacro08195 Vaccinium macrocarpon HOM05D000880 ORTHO05D009684 4.8e-29 131.3 98 67.3
Rhsim04G0217100 Rhododendron simsii HOM05D000880 ORTHO05D009684 3.1e-28 128.6 97 63.9
QL12p024656 Quercus lobata HOM05D000880 ORTHO05D009684 8.2e-21 104.0 96 53.1
vmacro08192 Vaccinium macrocarpon HOM05D000880 ORTHO05D009684 2.6e-19 99.0 101 52.5
Cfa013251 Carpinus fangiana HOM05D000880 ORTHO05D008158 4.5e-19 98.2 112 48.2
Haze_21694 Corylus avellana HOM05D000880 ORTHO05D009684 2.9e-18 95.5 103 50.5
RcHm_v2.0_Chr6g0312241 Rosa chinensis HOM05D000880 ORTHO05D009684 5.5e-17 91.3 95 46.3
arahy.Tifrunner.gnm1.ann1.CHY0RW Arachis hypogaea HOM05D000880 ORTHO05D009684 4.6e-16 88.2 93 50.5
Lj4A910T18 Lonicera japonica HOM05D000880 ORTHO05D009684 4.6e-16 88.2 88 55.7
arahy.Tifrunner.gnm1.ann1.D3X7TW Arachis hypogaea HOM05D005666 ORTHO05D007183 1.4e-15 86.7 93 49.5
Atru.chr7.2671 Acer truncatum HOM05D000880 ORTHO05D009684 2.3e-15 85.9 93 49.5
Lj6C69T3 Lonicera japonica HOM05D000880 ORTHO05D009684 3.9e-15 85.1 88 54.5
Medtr1g010020 Medicago truncatula HOM05D000880 ORTHO05D009684 3.9e-15 85.1 85 51.8
Manes.07G088100 Manihot esculenta HOM05D000880 ORTHO05D009684 8.8e-15 84.0 90 47.8
Lalb_Chr03g0032741 Lupinus albus HOM05D000880 ORTHO05D009684 1.1e-14 83.6 93 48.4
Lj3g0007027 Lotus japonicus HOM05D000880 ORTHO05D009684 1.5e-14 83.2 97 45.4
TAR626G1204 Trochodendron aralioides HOM05D000880 ORTHO05D009684 2.0e-14 82.8 94 50.0
CiPaw.07G214800 Carya illinoinensis HOM05D000880 ORTHO05D009684 4.3e-14 81.6 96 45.8
Lsat_1_v5_gn_5_33201 Lactuca sativa HOM05D000880 ORTHO05D009684 4.3e-14 81.6 96 45.8
FAN20G2124 Fragaria x ananassa HOM05D000880 ORTHO05D009684 7.4e-14 80.9 96 42.7
Prupe.1G462500 Prunus persica HOM05D000880 ORTHO05D009684 7.4e-14 80.9 96 43.8
CiPaw.15G081300 Carya illinoinensis HOM05D000880 ORTHO05D009684 9.7e-14 80.5 69 59.4
Ciclev10007859m.g Citrus clementina HOM05D000880 ORTHO05D009684 9.7e-14 80.5 95 46.3
FvH4_2g30660 Fragaria vesca HOM05D000880 ORTHO05D009684 9.7e-14 80.5 96 42.7
Ca_12883_v3 Cicer arietinum L. HOM05D000880 ORTHO05D009684 1.7e-13 79.7 85 49.4
Cpa.g.sc10.206 Carica papaya HOM05D000880 ORTHO05D009684 4.8e-13 78.2 78 51.3
Thecc.09G004700 Theobroma cacao HOM05D000880 ORTHO05D009684 4.8e-13 78.2 87 47.1
FAN24G3119 Fragaria x ananassa HOM05D000880 ORTHO05D009684 1.1e-12 77.0 95 42.1
FAN27G3148 Fragaria x ananassa HOM05D000880 ORTHO05D009684 2.4e-12 75.9 70 51.4
MD08G1133900 Malus domestica HOM05D000880 ORTHO05D009684 4.1e-12 75.1 95 41.1
Phvul.011G207000 Phaseolus vulgaris HOM05D000880 ORTHO05D009684 1.2e-11 73.6 86 47.7
TPR.G12115 Trifolium pratense HOM05D000880 ORTHO05D009684 1.2e-11 73.6 82 52.4
Cc08_g06370 Coffea canephora HOM05D000880 ORTHO05D009684 3.4e-11 72.0 78 52.6
MELO3C011202.2 Cucumis melo HOM05D000880 ORTHO05D009684 4.5e-11 71.6 88 44.3
CsaV3_2G031530 Cucumis sativus L. HOM05D000880 ORTHO05D009684 5.9e-11 71.2 81 46.9
ClCG08G012780 Citrullus lanatus HOM05D006422 ORTHO05D007992 1.0e-10 70.5 88 43.2
HanXRQChr07g0202221 Helianthus annuus HOM05D000880 ORTHO05D009684 1.0e-10 70.5 105 40.0
Sed0004667 Sechium edule HOM05D000880 ORTHO05D009684 1.0e-10 70.5 89 42.7
Nitab4.5_0000502g0180 Nicotiana tabacum HOM05D000880 ORTHO05D009684 3.8e-10 68.6 95 40.0
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 6.5e-10 67.8 65 50.8
Migut.E01433 Erythranthe guttata HOM05D000880 ORTHO05D009684 8.5e-10 67.4 53 62.3
VMungo1127G1257 Vigna mungo HOM05D000880 ORTHO05D009684 1.9e-09 66.2 60 58.3
CANSAT78G1387 Cannabis sativa HOM05D000880 ORTHO05D009684 2.5e-09 65.9 98 37.8
ECA232G0576 Erigeron canadensis HOM05D000880 ORTHO05D009684 3.2e-09 65.5 95 41.1
Psat6g031840 Pisum sativum HOM05D000880 ORTHO05D009684 3.2e-09 65.5 77 50.6
Hund04480 Selenicereus undatus HOM05D000880 ORTHO05D009684 1.6e-08 63.2 86 39.5
Oeu040613.1 Olea europaea HOM05D000880 ORTHO05D009684 3.6e-08 62.0 88 45.5
Nn8g39798 Nelumbo nucifera HOM05D000880 ORTHO05D009684 4.7e-08 61.6 104 38.5
Solyc03g120070.4 Solanum lycopersicum HOM05D000880 ORTHO05D009684 7.9e-08 60.8 71 45.1
Sopen03g038940 Solanum pennellii HOM05D000880 ORTHO05D009684 1.0e-07 60.5 71 45.1
PGSC0003DMG400005692 Solanum tuberosum HOM05D000880 ORTHO05D009684 1.0e-07 60.5 71 45.1
Glyma.13G197400 Glycine max HOM05D000880 ORTHO05D009684 1.8e-07 59.7 78 48.7
Aa31LG10G9610 Aethionema arabicum HOM05D000880 ORTHO05D009684 3.0e-07 58.9 67 47.8
Aa31LG10G9680 Aethionema arabicum HOM05D000880 ORTHO05D009684 3.0e-07 58.9 67 47.8
Nitab4.5_0001956g0020 Nicotiana tabacum HOM05D000880 ORTHO05D009684 3.0e-07 58.9 84 38.1
Aqoxy5G01876 Aquilegia oxysepala HOM05D000880 ORTHO05D009684 1.5e-06 56.6 60 46.7
MBI13_g01685_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D001950 1.5e-06 56.6 114 34.2
Eucgr.H00073 Eucalyptus grandis HOM05D000880 ORTHO05D009684 2.0e-06 56.2 97 36.1
Sc07g0001710 Simmondsia chinensis HOM05D000880 ORTHO05D009684 4.4e-06 55.1 106 35.8
ECA236G3570 Erigeron canadensis HOM05D000705 ORTHO05D002970 5.7e-06 54.7 56 53.6


User provided reference genes

Program Settings