Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 8.1e-55 216.9 111 100.0
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 1.1e-51 206.5 110 96.4
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 3.5e-50 201.4 110 91.8
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 5.1e-49 197.6 110 90.9
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 4.3e-48 194.5 110 89.1
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 4.3e-48 194.5 110 88.2
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 4.3e-48 194.5 110 88.2
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 4.3e-48 194.5 110 89.1
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 4.3e-48 194.5 110 90.0
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 7.3e-48 193.7 110 85.5
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 1.6e-47 192.6 110 88.2
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 2.1e-47 192.2 110 87.3
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 2.1e-47 192.2 110 85.5
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 4.7e-47 191.0 110 86.4
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 4.7e-47 191.0 110 83.6
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 4.7e-47 191.0 110 83.6
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 4.7e-47 191.0 110 83.6
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 4.7e-47 191.0 110 86.4
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 6.2e-47 190.7 110 88.2
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 8.1e-47 190.3 110 84.5
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.8e-46 189.1 110 83.6
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.8e-46 189.1 110 83.6
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 1.8e-46 189.1 110 83.6
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 1.8e-46 189.1 110 85.5
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 4.0e-46 188.0 110 85.5
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 6.9e-46 187.2 110 85.5
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 1.2e-45 186.4 110 85.5
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 1.2e-45 186.4 110 85.5
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 1.5e-45 186.0 110 83.6
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 1.5e-45 186.0 110 83.6
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 1.5e-45 186.0 110 83.6
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 2.6e-45 185.3 111 83.8
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 3.4e-45 184.9 110 83.6
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 3.4e-45 184.9 110 83.6
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 3.4e-45 184.9 110 83.6
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 4.4e-45 184.5 110 82.7
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 5.8e-45 184.1 110 83.6
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 5.8e-45 184.1 110 83.6
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 5.8e-45 184.1 110 83.6
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 5.8e-45 184.1 110 83.6
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 5.8e-45 184.1 110 83.6
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 5.8e-45 184.1 110 83.6
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 9.9e-45 183.3 111 82.0
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 9.9e-45 183.3 110 82.7
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 1.3e-44 183.0 110 83.6
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 1.3e-44 183.0 110 81.8
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 1.3e-44 183.0 114 80.7
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 1.7e-44 182.6 110 82.7
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 1.7e-44 182.6 110 84.5
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 1.7e-44 182.6 110 80.9
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 1.7e-44 182.6 110 82.7
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 2.2e-44 182.2 110 83.6
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 2.2e-44 182.2 110 80.0
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 2.9e-44 181.8 110 83.6
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 2.9e-44 181.8 110 83.6
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 2.9e-44 181.8 110 80.9
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 2.9e-44 181.8 110 81.8
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 3.8e-44 181.4 110 82.7
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 4.9e-44 181.0 110 82.7
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 4.9e-44 181.0 110 83.6
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 6.4e-44 180.6 110 80.9
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 6.4e-44 180.6 110 79.1
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 8.4e-44 180.3 110 78.2
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 8.4e-44 180.3 110 78.2
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 8.4e-44 180.3 110 78.2
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 8.4e-44 180.3 110 78.2
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 8.4e-44 180.3 110 78.2
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 8.4e-44 180.3 110 78.2
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 8.4e-44 180.3 110 78.2
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 8.4e-44 180.3 110 78.2
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 8.4e-44 180.3 110 81.8
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 8.4e-44 180.3 110 81.8
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 8.4e-44 180.3 110 80.0
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 1.1e-43 179.9 110 77.3
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 1.1e-43 179.9 110 77.3
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 1.1e-43 179.9 110 80.9
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 1.1e-43 179.9 110 80.0
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 1.4e-43 179.5 110 80.9
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 1.4e-43 179.5 110 82.7
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 1.4e-43 179.5 110 81.8
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 1.4e-43 179.5 110 80.9
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 1.9e-43 179.1 110 80.9
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 1.9e-43 179.1 110 80.0
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 3.2e-43 178.3 110 80.9
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 3.2e-43 178.3 107 80.4
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 3.2e-43 178.3 107 80.4
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 3.2e-43 178.3 107 80.4
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 3.2e-43 178.3 110 80.0
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 3.2e-43 178.3 110 80.9
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 4.2e-43 177.9 110 80.0
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 4.2e-43 177.9 110 80.9
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 5.4e-43 177.6 110 82.7
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 5.4e-43 177.6 107 80.4
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 9.3e-43 176.8 110 80.0
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 9.3e-43 176.8 110 80.9
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 1.2e-42 176.4 110 82.7
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 1.6e-42 176.0 110 77.3
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 1.6e-42 176.0 110 79.1
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 2.1e-42 175.6 110 80.9
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 2.1e-42 175.6 110 80.9
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 6.0e-42 174.1 107 78.5
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 6.0e-42 174.1 104 85.6
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 2.3e-41 172.2 110 80.0
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 2.3e-41 172.2 110 80.0
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 1.1e-40 169.9 110 78.2
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 1.9e-40 169.1 109 79.8
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 4.8e-39 164.5 98 84.7
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 3.4e-37 158.3 132 65.9
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 5.8e-37 157.5 107 72.9
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 2.2e-36 155.6 183 50.8
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 3.8e-36 154.8 107 76.6
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 7.1e-35 150.6 92 76.1
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 2.7e-34 148.7 107 67.3
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 2.1e-31 139.0 110 68.2
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 5.8e-29 131.0 90 71.1
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 4.9e-28 127.9 96 76.0
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 8.4e-28 127.1 110 63.6
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 8.4e-28 127.1 110 63.6
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 1.2e-26 123.2 78 78.2
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 2.7e-26 122.1 110 60.9
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 2.7e-26 122.1 107 53.3
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 1.0e-25 120.2 107 57.9
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 6.2e-23 110.9 60 91.7
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 6.9e-22 107.5 60 81.7
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 3.4e-21 105.1 108 48.1
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 1.3e-20 103.2 60 80.0
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 7.9e-18 94.0 62 71.0
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 1.6e-15 86.3 59 76.3
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 4.1e-14 81.6 105 39.0
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 7.6e-13 77.4 104 40.4
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 9.4e-11 70.5 42 81.0
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 1.2e-10 70.1 42 90.5
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 1.6e-10 69.7 47 74.5
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 3.9e-09 65.1 99 37.4
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 4.1e-06 55.1 33 81.8


User provided reference genes

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