Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 0.0e+00 1943.7 1009 100.0
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 1.8e-262 909.8 1036 54.2
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 3.9e-249 865.5 987 54.7
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 1.2e-136 491.9 1106 37.3
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 1.7e-130 471.5 1173 36.1
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 6.3e-114 416.4 1201 33.0
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 1.0e-111 409.1 1097 35.0
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 1.3e-106 392.1 1088 35.1
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 2.2e-106 391.3 1043 33.8
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 3.1e-105 387.5 1192 32.4
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 2.7e-104 384.4 1032 33.9
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 6.5e-103 379.8 1076 34.4
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 2.8e-101 374.4 1077 34.2
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 1.8e-100 371.7 1153 32.8
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 4.1e-97 360.5 1184 31.8
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 3.3e-94 350.9 1083 33.3
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 1.2e-93 349.0 1040 32.3
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 1.2e-91 342.4 1143 30.4
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 1.7e-90 338.6 1076 33.1
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 2.2e-90 338.2 729 39.0
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 2.7e-88 331.3 1133 30.6
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 7.8e-88 329.7 1011 32.1
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 4.3e-86 323.9 1071 32.8
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 9.5e-86 322.8 1013 32.3
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 1.6e-85 322.0 1074 32.4
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 2.8e-85 321.2 1109 31.6
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 4.4e-83 313.9 1198 29.5
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 5.4e-81 307.0 1197 29.2
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 5.4e-81 307.0 1065 31.4
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 7.8e-80 303.1 1140 30.4
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 1.0e-79 302.8 1071 31.2
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 1.3e-79 302.4 1036 31.8
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 3.9e-79 300.8 904 33.2
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 5.1e-79 300.4 1254 28.2
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 6.6e-79 300.1 1099 30.7
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.1e-78 299.3 1014 32.0
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 2.8e-77 294.7 1300 28.4
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 4.0e-76 290.8 1071 31.0
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 6.8e-76 290.0 1032 29.6
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 6.4e-74 283.5 1057 30.2
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.1e-73 282.7 1009 31.6
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 3.2e-73 281.2 1105 29.6
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 9.2e-73 279.6 1054 30.7
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 7.6e-67 260.0 1027 30.1
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 4.9e-66 257.3 1104 28.9
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 2.1e-64 251.9 1056 30.0
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.7e-64 251.5 1012 30.3
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 6.6e-63 246.9 1109 28.5
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 8.7e-63 246.5 1055 27.7
Actinidia24785 Actinidia chinensis HOM05D005839 ORTHO05D005686 1.8e-60 238.8 355 45.9
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 4.0e-60 237.7 967 30.0
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 2.0e-59 235.3 1064 27.0
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 4.4e-59 234.2 1092 28.3
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 2.2e-58 231.9 1074 26.7
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 6.4e-58 230.3 1045 29.0
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 6.0e-56 223.8 971 28.6
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 7.8e-56 223.4 495 40.4
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 3.0e-55 221.5 1068 28.7
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 5.1e-55 220.7 1060 26.6
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 8.7e-55 219.9 1042 27.3
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 1.9e-54 218.8 1043 27.9
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.8e-52 212.2 1012 28.5
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 4.0e-52 211.1 1032 26.8
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 9.0e-52 209.9 605 34.7
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 4.5e-51 207.6 1094 27.4
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 5.8e-51 207.2 1087 25.7
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 9.9e-51 206.5 1009 28.3
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 3.8e-50 204.5 1012 29.2
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 3.8e-50 204.5 1094 27.3
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.4e-49 202.6 1009 27.8
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.4e-49 201.8 1012 29.2
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 4.6e-48 197.6 1113 26.5
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 1.3e-47 196.1 397 43.8
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 1.1e-46 193.0 1109 26.0
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.9e-46 192.2 990 28.7
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 1.3e-45 189.5 560 33.8
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 1.8e-44 185.7 1046 26.6
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 3.1e-44 184.9 1062 26.5
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 5.3e-44 184.1 954 27.5
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 4.2e-41 174.5 743 30.1
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 4.6e-40 171.0 1021 26.9
Lalb_Chr12g0205781 Lupinus albus HOM05D005839 ORTHO05D005686 3.3e-38 164.9 862 27.1
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 2.1e-37 162.2 1017 26.0
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 4.8e-37 161.0 323 36.5
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 4.0e-36 157.9 1134 24.4
Cpa.g.sc157.15 Carica papaya HOM05D005839 ORTHO05D005686 2.6e-35 155.2 472 30.7
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 2.2e-34 152.1 415 33.3
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 1.1e-33 149.8 219 44.3
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 1.1e-33 149.8 938 27.3
Actinidia04545 Actinidia chinensis HOM05D005839 ORTHO05D005686 7.1e-33 147.1 153 55.6
arahy.Tifrunner.gnm1.ann1.52QBHW Arachis hypogaea HOM05D005839 ORTHO05D005686 1.2e-32 146.4 105 62.9
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 2.7e-32 145.2 408 35.3
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 6.7e-31 140.6 734 28.1
Cpa.g.sc157.18 Carica papaya HOM05D005839 ORTHO05D005686 2.2e-29 135.6 157 49.7
arahy.Tifrunner.gnm1.ann1.Q2NVSC Arachis hypogaea HOM05D005839 ORTHO05D000011 4.8e-29 134.4 98 61.2
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 1.8e-28 132.5 1059 24.7
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 4.1e-28 131.3 133 60.9
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 9.0e-28 130.2 623 28.1
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.4e-27 128.3 1019 24.6
Actinidia27690 Actinidia chinensis HOM05D005839 ORTHO05D005686 2.2e-26 125.6 145 51.7
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 4.2e-25 121.3 419 29.8
Actinidia04642 Actinidia chinensis HOM05D005839 ORTHO05D005686 3.6e-24 118.2 200 40.5
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 1.8e-23 115.9 183 47.5
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 8.8e-23 113.6 307 35.5
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 8.8e-23 113.6 141 41.8
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 1.1e-22 113.2 210 43.3
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 3.3e-22 111.7 176 46.0
Glyma.18G003300 Glycine max HOM05D005839 ORTHO05D005686 1.7e-21 109.4 483 26.1
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 1.4e-20 106.3 415 28.2
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 1.5e-19 102.8 427 28.8
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 1.0e-18 100.1 127 53.5
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 3.8e-18 98.2 211 34.1
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 5.0e-18 97.8 723 25.9
arahy.Tifrunner.gnm1.ann1.CIA2YT Arachis hypogaea HOM05D005839 ORTHO05D005686 1.4e-17 96.3 81 54.3
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 1.4e-17 96.3 129 41.1
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 1.4e-17 96.3 127 40.9
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 1.4e-17 96.3 129 41.1
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 1.9e-17 95.9 129 44.2
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 3.2e-17 95.1 73 58.9
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 5.5e-17 94.4 125 40.0
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 4.7e-16 91.3 129 40.3
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 4.7e-16 91.3 129 40.3
A08p24270 Brassica napus HOM05D010750 ORTHO05D005686 6.1e-16 90.9 129 39.5
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 6.1e-16 90.9 129 39.5
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 6.1e-16 90.9 378 28.8
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 1.8e-15 89.4 989 23.4
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 3.9e-15 88.2 216 36.1
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 5.1e-15 87.8 693 22.8
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 1.1e-14 86.7 320 28.1
PSO063G0130 Papaver somniferum HOM05D037519 ORTHO05D037279 1.5e-14 86.3 1033 23.4
Actinidia04544 Actinidia chinensis HOM05D005839 ORTHO05D005686 2.0e-14 85.9 68 67.6
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 3.3e-14 85.1 726 22.7
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 5.7e-14 84.3 187 37.4
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 2.2e-13 82.4 995 22.2
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 2.8e-13 82.0 1034 22.5
Nn1g08130 Nelumbo nucifera HOM05D005839 ORTHO05D005686 6.3e-13 80.9 117 39.3
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 7.0e-12 77.4 113 38.1
Lalb_Chr07g0186961 Lupinus albus HOM05D005839 ORTHO05D005686 1.5e-11 76.3 112 41.1
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 2.0e-11 75.9 686 23.0
Actinidia04666 Actinidia chinensis HOM05D005839 ORTHO05D005686 4.5e-11 74.7 72 52.8
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 1.3e-10 73.2 389 25.2
SEGI_24376 Sequoiadendron giganteum HOM05D005839 ORTHO05D005686 1.1e-09 70.1 41 61.0
QL06p027203 Quercus lobata HOM05D034196 ORTHO05D005686 1.4e-09 69.7 48 58.3
Mapoly0059s0004 Marchantia polymorpha HOM05D005839 ORTHO05D005686 1.2e-08 66.6 99 37.4
SMO153G0001 Selaginella moellendorffii HOM05D005839 ORTHO05D005686 2.1e-08 65.9 90 34.4
Mapoly0034s0131 Marchantia polymorpha HOM05D005839 ORTHO05D005686 3.6e-08 65.1 75 42.7
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 1.4e-07 63.2 84 46.4
Mapoly0008s0012 Marchantia polymorpha HOM05D005839 ORTHO05D005686 8.8e-07 60.5 44 52.3
AagrBONN_evm.TU.Sc2ySwM_344.2400 Anthoceros agrestis HOM05D010750 ORTHO05D005686 4.4e-06 58.2 42 54.8


User provided reference genes

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