Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003025 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.8e-69 265.8 130 100.0
CSS0024703 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 2.0e-60 235.7 131 90.8
CSS0008274 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 4.0e-45 184.9 130 74.6
Actinidia11793 Actinidia chinensis HOM05D007520 ORTHO05D009417 3.6e-38 161.8 136 62.5
FAN22G1570 Fragaria x ananassa HOM05D000296 ORTHO05D000175 3.6e-38 161.8 155 54.2
Ciclev10016556m.g Citrus clementina HOM05D007520 ORTHO05D009417 6.0e-33 144.4 138 54.3
Atru.chr11.1007 Acer truncatum HOM05D007520 ORTHO05D009417 7.8e-33 144.1 178 46.1
TAR374G0082 Trochodendron aralioides HOM05D000504 ORTHO05D000403 3.9e-32 141.7 137 53.3
PSO478G1043 Papaver somniferum HOM05D007520 ORTHO05D009417 1.9e-31 139.4 136 52.9
Hma1.2p1_0095F.1_g047520 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 2.5e-31 139.0 135 55.6
Manes.17G089333 Manihot esculenta HOM05D007520 ORTHO05D009417 3.3e-31 138.7 137 54.0
COL.COLO4_27582 Corchorus olitorius HOM05D007520 ORTHO05D009417 4.3e-31 138.3 135 53.3
MD13G1015700 Malus domestica HOM05D007520 ORTHO05D009417 5.6e-31 137.9 135 54.8
FAN17G2852 Fragaria x ananassa HOM05D007520 ORTHO05D009417 9.5e-31 137.1 134 53.7
Gorai.008G169800 Gossypium raimondii HOM05D007520 ORTHO05D009417 9.5e-31 137.1 135 51.9
CsaV3_5G012990 Cucumis sativus L. HOM05D007520 ORTHO05D009417 2.1e-30 136.0 134 53.0
Sed0012329 Sechium edule HOM05D007520 ORTHO05D009417 3.6e-30 135.2 136 50.7
QL03p039135 Quercus lobata HOM05D007520 ORTHO05D009417 4.7e-30 134.8 129 53.5
Duzib268G1867 Durio zibethinus HOM05D007520 ORTHO05D009417 8.1e-30 134.0 136 50.7
Aqoxy5G01264 Aquilegia oxysepala HOM05D007520 ORTHO05D009417 1.1e-29 133.7 136 52.2
MELO3C020056.2 Cucumis melo HOM05D007520 ORTHO05D009417 2.3e-29 132.5 134 52.2
Prupe.1G338000 Prunus persica HOM05D007520 ORTHO05D009417 2.3e-29 132.5 137 52.6
Nn4g24547 Nelumbo nucifera HOM05D007520 ORTHO05D009417 4.0e-29 131.7 135 53.3
PSO017G5472 Papaver somniferum HOM05D007520 ORTHO05D009417 4.0e-29 131.7 139 49.6
FvH4_4g26110 Fragaria vesca HOM05D007520 ORTHO05D009417 5.2e-29 131.3 137 51.1
ECA246G0416 Erigeron canadensis HOM05D007520 ORTHO05D009417 6.8e-29 131.0 131 54.2
FAN12G3032 Fragaria x ananassa HOM05D007520 ORTHO05D009417 1.2e-28 130.2 131 52.7
FAN12G3090 Fragaria x ananassa HOM05D007520 ORTHO05D009417 1.2e-28 130.2 131 52.7
RcHm_v2.0_Chr4g0433681 Rosa chinensis HOM05D007520 ORTHO05D009417 1.2e-28 130.2 137 50.4
Thecc.02G303900 Theobroma cacao HOM05D007520 ORTHO05D009417 1.2e-28 130.2 129 53.5
CANSAT78G2519 Cannabis sativa HOM05D007520 ORTHO05D009417 1.5e-28 129.8 135 51.9
Atru.BG.295.p Acer truncatum HOM05D007520 ORTHO05D009417 4.4e-28 128.3 130 52.3
TWI53G0076 Tripterygium wilfordii HOM05D007520 ORTHO05D009417 4.4e-28 128.3 135 50.4
BraA06t27270Z Brassica rapa HOM05D007520 ORTHO05D009417 7.5e-28 127.5 136 52.2
Thhalv10005705m.g Eutrema salsugineum HOM05D007520 ORTHO05D009417 7.5e-28 127.5 136 51.5
Lj2g0009613 Lotus japonicus HOM05D007520 ORTHO05D009417 9.9e-28 127.1 135 48.1
Psat6g100600 Pisum sativum HOM05D007520 ORTHO05D009417 9.9e-28 127.1 135 49.6
TPR.G35527 Trifolium pratense HOM05D007520 ORTHO05D009417 9.9e-28 127.1 135 50.4
BcaC06g31264 Brassica carinata HOM05D007520 ORTHO05D009417 2.2e-27 125.9 132 53.0
Medtr1g038820 Medicago truncatula HOM05D007520 ORTHO05D009417 2.9e-27 125.6 135 48.9
A06p43940 Brassica napus HOM05D007520 ORTHO05D009417 3.7e-27 125.2 132 52.3
Sp2g13330 Schrenkiella parvula HOM05D007520 ORTHO05D009417 3.7e-27 125.2 136 50.0
BolC7t43791H Brassica oleracea HOM05D007520 ORTHO05D009417 4.9e-27 124.8 136 50.7
Migut.L00619 Erythranthe guttata HOM05D007520 ORTHO05D009417 8.3e-27 124.0 136 48.5
PGSC0003DMG400041336 Solanum tuberosum HOM05D001905 ORTHO05D001820 8.3e-27 124.0 135 50.4
C07p32740 Brassica napus HOM05D007520 ORTHO05D009417 1.4e-26 123.2 132 51.5
THA.LOC104824117 Tarenaya hassleriana HOM05D007520 ORTHO05D009417 4.1e-26 121.7 136 44.9
Solyc04g078500.1 Solanum lycopersicum HOM05D007520 ORTHO05D009417 5.4e-26 121.3 135 49.6
VMungo0251G1805 Vigna mungo HOM05D007520 ORTHO05D009417 7.1e-26 120.9 129 48.1
CARHR144480 Cardamine hirsuta HOM05D007520 ORTHO05D009417 1.2e-25 120.2 136 49.3
CAN.G1812.4 Capsicum annuum HOM05D007520 ORTHO05D009417 1.6e-25 119.8 137 48.2
arahy.Tifrunner.gnm1.ann1.RL07R4 Arachis hypogaea HOM05D007520 ORTHO05D009417 2.1e-25 119.4 139 48.2
Sopen04g032100 Solanum pennellii HOM05D007520 ORTHO05D009417 2.1e-25 119.4 135 48.9
HanXRQChr12g0379401 Helianthus annuus HOM05D007520 ORTHO05D009417 4.6e-25 118.2 129 49.6
AT2G01905 Arabidopsis thaliana HOM05D007520 ORTHO05D009417 6.0e-25 117.9 136 48.5
Nitab4.5_0010118g0020 Nicotiana tabacum HOM05D007520 ORTHO05D009417 7.8e-25 117.5 138 47.1
Lalb_Chr10g0094861 Lupinus albus HOM05D007520 ORTHO05D009417 1.3e-24 116.7 139 45.3
Nitab4.5_0004339g0060 Nicotiana tabacum HOM05D007520 ORTHO05D009417 1.3e-24 116.7 138 46.4
SGA_v2.0_scaffold172G39028 Striga asiatica HOM05D007520 ORTHO05D009417 1.7e-24 116.3 135 48.9
CiPaw.06G058600 Carya illinoinensis HOM05D007520 ORTHO05D009417 3.0e-24 115.5 146 46.6
SalBow3G0394 Salvia bowleyana HOM05D007520 ORTHO05D009417 3.0e-24 115.5 116 53.4
SalBow4G2630 Salvia bowleyana HOM05D007520 ORTHO05D009417 3.0e-24 115.5 116 53.4
PGR042G3173 Punica granatum HOM05D007520 ORTHO05D009417 1.1e-23 113.6 137 46.0
AL5G11020 Arabidopsis lyrata HOM05D007520 ORTHO05D009417 5.6e-23 111.3 136 46.3
Phvul.003G001900 Phaseolus vulgaris HOM05D007520 ORTHO05D009417 2.8e-22 109.0 135 43.0
Rhsim09G0085600 Rhododendron simsii HOM05D007520 ORTHO05D009417 2.8e-22 109.0 117 54.7
Aa31LG2G8010 Aethionema arabicum HOM05D007520 ORTHO05D009417 6.2e-22 107.8 163 40.5
Zm00001eb010100 Zea mays HOM05D007520 ORTHO05D009417 2.4e-21 105.9 136 39.0
Ah.11g041100 Amaranthus hybridus HOM05D007520 ORTHO05D009417 3.1e-21 105.5 137 43.8
Sc15g0004470 Simmondsia chinensis HOM05D007520 ORTHO05D009417 4.0e-21 105.1 136 41.2
Cc11_g05730 Coffea canephora HOM05D007520 ORTHO05D009417 2.6e-20 102.4 153 42.5
EL10Ac1g01972 Beta vulgaris HOM05D007520 ORTHO05D009417 7.6e-20 100.9 137 40.9
DCAR_002655 Daucus carota HOM05D007520 ORTHO05D009417 7.6e-20 100.9 113 52.2
SalBow2G3493 Salvia bowleyana HOM05D007520 ORTHO05D009417 2.9e-19 99.0 88 58.0
SalBow6G7185 Salvia bowleyana HOM05D007520 ORTHO05D009417 2.9e-19 99.0 88 58.0
MSTRG.8107 Avicennia marina HOM05D007520 ORTHO05D009417 4.9e-19 98.2 66 68.2
Gohir.A12G153900 Gossypium hirsutum HOM05D007520 ORTHO05D009417 8.4e-19 97.4 69 63.8
Gohir.D12G157000 Gossypium hirsutum HOM05D007520 ORTHO05D009417 1.1e-18 97.1 67 65.7
Dinv08902 Davidia involucrata HOM05D007520 ORTHO05D009417 1.4e-18 96.7 58 77.6
Hma1.2p1_0095F.1_g047530 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 2.4e-18 95.9 161 39.1
AUR62036879 Chenopodium quinoa HOM05D007520 ORTHO05D009417 1.0e-16 90.5 125 39.2
PGSC0003DMG400013121 Solanum tuberosum HOM05D007520 ORTHO05D009417 1.3e-16 90.1 64 67.2
HPP92_016406 Vanilla planifolia HOM05D007520 ORTHO05D009417 2.3e-16 89.4 66 68.2
Lsat_1_v5_gn_5_170921 Lactuca sativa HOM05D007520 ORTHO05D009417 3.9e-16 88.6 65 63.1
GSVIVG01011596001 Vitis vinifera HOM05D007520 ORTHO05D009417 6.6e-16 87.8 58 70.7
ClCG11G001000 Citrullus lanatus HOM05D007520 ORTHO05D009417 8.7e-16 87.4 108 42.6
Glyma.14G224300 Glycine max HOM05D007520 ORTHO05D009417 1.1e-15 87.0 113 42.5
Lj3A859T72 Lonicera japonica HOM05D007520 ORTHO05D009417 4.3e-15 85.1 130 42.3
CSS0021820 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.6e-14 83.2 53 83.0
CSS0032687 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.6e-14 83.2 53 83.0
Carub.0005s0089 Capsella rubella HOM05D007520 ORTHO05D009417 3.1e-13 79.0 66 57.6
GSVIVG01011595001 Vitis vinifera HOM05D007520 ORTHO05D009417 2.7e-09 65.9 57 59.6
Carub.0005s0090 Capsella rubella HOM05D007520 ORTHO05D009417 1.1e-07 60.5 46 63.0


User provided reference genes

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