Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 1.4e-162 576.2 306 100.0
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 1.5e-66 257.3 189 69.3
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 1.6e-65 253.8 189 68.3
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 2.1e-65 253.4 189 68.3
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 2.8e-65 253.1 169 75.7
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 2.8e-65 253.1 169 75.7
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 3.7e-65 252.7 189 68.3
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 1.1e-64 251.1 189 67.2
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 4.0e-64 249.2 189 66.1
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 4.0e-64 249.2 189 67.2
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 4.0e-64 249.2 189 66.7
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 4.0e-64 249.2 189 66.1
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 4.0e-64 249.2 189 66.1
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 5.3e-64 248.8 188 67.0
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 5.3e-64 248.8 188 67.6
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 5.3e-64 248.8 188 67.6
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 6.9e-64 248.4 189 66.7
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 6.9e-64 248.4 188 67.6
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 2.0e-63 246.9 188 67.6
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 2.6e-63 246.5 188 65.4
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 2.6e-63 246.5 189 66.7
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 3.4e-63 246.1 188 66.0
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 3.4e-63 246.1 189 67.7
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 4.5e-63 245.7 189 65.6
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 5.8e-63 245.4 189 65.6
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 7.6e-63 245.0 190 66.8
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 1.0e-62 244.6 191 65.4
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 1.3e-62 244.2 188 64.9
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 1.3e-62 244.2 188 64.9
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 1.7e-62 243.8 188 66.0
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 1.7e-62 243.8 188 64.9
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 2.9e-62 243.0 188 66.0
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 2.9e-62 243.0 189 65.1
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 2.9e-62 243.0 189 65.6
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 4.9e-62 242.3 189 64.0
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 4.9e-62 242.3 191 65.4
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 4.9e-62 242.3 189 64.6
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 6.5e-62 241.9 190 65.3
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 6.5e-62 241.9 190 66.3
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 8.4e-62 241.5 189 64.0
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 1.1e-61 241.1 188 63.8
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 1.1e-61 241.1 206 61.7
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 1.1e-61 241.1 188 64.4
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 1.9e-61 240.4 189 63.5
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 1.9e-61 240.4 190 64.7
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 1.9e-61 240.4 188 64.4
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.5e-61 240.0 189 63.5
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 2.5e-61 240.0 188 63.8
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 3.2e-61 239.6 189 63.5
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 4.2e-61 239.2 189 63.0
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 4.2e-61 239.2 189 63.0
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 4.2e-61 239.2 189 65.6
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 5.5e-61 238.8 188 64.4
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 9.3e-61 238.0 190 64.2
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 9.3e-61 238.0 190 64.2
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 9.3e-61 238.0 189 63.0
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 1.2e-60 237.7 189 62.4
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 1.2e-60 237.7 190 64.2
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 1.2e-60 237.7 188 62.8
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 1.6e-60 237.3 191 62.8
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 1.6e-60 237.3 189 63.5
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 2.7e-60 236.5 189 62.4
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 3.5e-60 236.1 189 61.9
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 4.6e-60 235.7 189 63.0
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 6.1e-60 235.3 189 61.9
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.1e-60 235.3 189 61.9
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 6.1e-60 235.3 189 61.4
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 6.1e-60 235.3 188 62.2
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 6.1e-60 235.3 189 63.5
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 7.9e-60 235.0 190 63.2
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 1.0e-59 234.6 189 64.0
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.0e-59 234.6 189 61.4
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.3e-59 234.2 192 60.9
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.3e-59 234.2 192 60.9
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.8e-59 233.8 192 60.4
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 2.3e-59 233.4 189 61.9
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.9e-59 232.6 189 60.8
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.1e-59 232.3 189 60.8
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.7e-59 231.9 189 60.3
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 6.7e-59 231.9 189 61.4
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 1.1e-58 231.1 188 61.7
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 1.1e-58 231.1 186 61.3
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 1.9e-58 230.3 189 61.4
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 2.5e-58 229.9 189 60.8
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 4.3e-58 229.2 189 60.8
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 5.7e-58 228.8 189 60.8
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 7.4e-58 228.4 188 60.6
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 9.7e-58 228.0 188 61.7
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 2.2e-57 226.9 191 60.2
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 8.2e-57 224.9 201 57.2
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 8.2e-57 224.9 188 60.1
PSO017G1131 Papaver somniferum HOM05D003837 ORTHO05D004751 1.1e-56 224.6 188 59.6
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 1.4e-56 224.2 189 59.3
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 2.4e-56 223.4 189 57.7
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 2.4e-56 223.4 189 59.8
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 5.3e-56 222.2 189 59.3
Zm00001eb094870 Zea mays HOM05D003837 ORTHO05D004751 6.9e-56 221.9 187 58.8
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 1.2e-55 221.1 189 58.7
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.0e-55 220.3 139 74.1
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 2.6e-55 219.9 220 54.5
Os07g0418000 Oryza sativa ssp. japonica HOM05D003837 ORTHO05D004751 4.5e-55 219.2 187 58.3
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 7.7e-55 218.4 189 57.7
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 7.7e-55 218.4 189 59.8
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 1.0e-54 218.0 189 57.7
CDE05G2325 Ceratophyllum demersum HOM05D003837 ORTHO05D004751 3.8e-54 216.1 188 56.4
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 6.5e-54 215.3 189 57.1
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 1.4e-53 214.2 189 57.1
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 1.4e-53 214.2 190 57.9
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 5.5e-53 212.2 189 58.7
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 5.5e-53 212.2 189 57.7
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 7.2e-53 211.8 189 57.1
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.2e-52 211.1 189 57.7
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 1.4e-51 207.6 189 57.7
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 1.8e-51 207.2 189 54.5
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 2.3e-51 206.8 189 57.1
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 2.3e-51 206.8 133 72.9
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 1.5e-50 204.1 189 57.7
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 2.0e-50 203.8 141 66.0
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 5.7e-50 202.2 189 56.6
FAN06G3536 Fragaria x ananassa HOM05D003837 ORTHO05D004751 9.7e-50 201.4 192 53.6
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 9.7e-50 201.4 189 56.1
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 1.7e-49 200.7 189 55.0
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 1.7e-49 200.7 189 55.0
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.2e-49 200.3 192 53.6
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 2.2e-49 200.3 189 54.5
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 6.3e-49 198.7 188 56.9
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.4e-48 196.8 189 54.0
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.4e-48 196.8 189 54.0
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 2.4e-48 196.8 188 56.9
FAN06G3952 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.1e-48 196.4 192 52.6
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.9e-48 195.3 189 54.5
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.0e-47 193.7 174 58.0
Mapoly0002s0196 Marchantia polymorpha HOM05D003837 ORTHO05D004751 3.4e-47 193.0 189 55.0
RcHm_v2.0_Chr1g0356011 Rosa chinensis HOM05D003837 ORTHO05D004751 3.4e-47 193.0 141 65.2
Pp3c23_10590 Physcomitrium patens HOM05D003837 ORTHO05D004751 1.0e-46 191.4 174 56.3
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 1.0e-46 191.4 189 54.0
FvH4_3g44250 Fragaria vesca HOM05D003837 ORTHO05D004751 2.9e-46 189.9 189 50.8
FAN11G2601 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.9e-46 189.9 189 50.8
FAN16G2327 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.9e-46 189.9 189 50.8
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 3.8e-46 189.5 164 58.5
RcHm_v2.0_Chr1g0356041 Rosa chinensis HOM05D003837 ORTHO05D004751 3.8e-46 189.5 141 64.5
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 5.0e-46 189.1 172 57.0
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 5.0e-46 189.1 189 55.6
SMO118G0280 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 6.5e-46 188.7 170 55.3
AagrBONN_evm.TU.Sc2ySwM_228.5133 Anthoceros agrestis HOM05D003837 ORTHO05D004751 1.4e-45 187.6 170 57.1
AagrBONN_evm.TU.Sc2ySwM_228.2910 Anthoceros agrestis HOM05D003837 ORTHO05D004751 3.2e-45 186.4 170 55.9
Pp3c11_2170 Physcomitrium patens HOM05D003837 ORTHO05D004751 4.2e-45 186.0 173 53.8
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 1.6e-44 184.1 188 55.3
Pp3c24_7060 Physcomitrium patens HOM05D003837 ORTHO05D004751 1.6e-44 184.1 173 52.6
RcHm_v2.0_Chr1g0355961 Rosa chinensis HOM05D003837 ORTHO05D004751 6.1e-44 182.2 190 50.0
HanXRQChr04g0121171 Helianthus annuus HOM05D003837 ORTHO05D004751 6.7e-43 178.7 189 49.7
RcHm_v2.0_Chr1g0356051 Rosa chinensis HOM05D003837 ORTHO05D004751 1.7e-41 174.1 141 61.7
Nn1g01565 Nelumbo nucifera HOM05D003837 ORTHO05D004751 2.2e-41 173.7 188 47.3
CBR_g30756 Chara braunii HOM05D003837 ORTHO05D004751 1.0e-38 164.9 207 44.4
MD09G1245400 Malus domestica HOM05D003837 ORTHO05D004751 5.7e-34 149.1 82 84.1
FvH4_7g14571 Fragaria vesca HOM05D003837 ORTHO05D004751 9.7e-34 148.3 84 82.1
SMO118G0457 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 1.3e-25 121.3 173 42.8
Cre06.g278117 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 1.7e-25 120.9 139 44.6
Glyma.09G258500 Glycine max HOM05D003837 ORTHO05D004751 2.0e-23 114.0 137 46.7
SGA_v2.0_scaffold95G28830 Striga asiatica HOM05D003837 ORTHO05D004751 2.5e-21 107.1 61 83.6
MCO05G263 Micromonas commoda HOM05D003837 ORTHO05D004751 1.5e-18 97.8 138 37.0
Cre13.g578900 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 3.1e-16 90.1 185 33.5
arahy.Tifrunner.gnm1.ann1.B43A3C Arachis hypogaea HOM05D003837 ORTHO05D004751 2.7e-15 87.0 98 44.9
Ciclev10013186m.g Citrus clementina HOM05D003837 ORTHO05D004751 1.7e-14 84.3 67 58.2
AUR62043290 Chenopodium quinoa HOM05D008055 ORTHO05D009927 1.9e-13 80.9 53 67.9
A06p08350 Brassica napus HOM05D003837 ORTHO05D099682 8.0e-12 75.5 71 56.3
Ciclev10006592m.g Citrus clementina HOM05D003837 ORTHO05D033091 5.2e-11 72.8 71 46.5
BolC9t54120H Brassica oleracea HOM05D003837 ORTHO05D033622 2.9e-09 67.0 63 58.7
BolC7t40474H Brassica oleracea HOM05D003837 ORTHO05D033622 4.9e-09 66.2 63 57.1
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 5.4e-08 62.8 38 71.1
vmacro20932 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 7.0e-08 62.4 83 41.0
C09p56440 Brassica napus HOM05D003837 ORTHO05D101394 7.8e-07 58.9 56 58.9
AUR62040596 Chenopodium quinoa HOM05D003837 ORTHO05D009742 8.6e-06 55.5 79 45.6


User provided reference genes

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